Components required for in vitro cleavage and polyadenylation of eukaryotic mRNA

We have studied in vitro cleavage/polyadenylation of precursor RNA containing herpes simplex virus type 2 poly A site sequences and have analysed four RNA/protein complexes which form during in vitro reactions. Two complexes, A and B, form extremely rapidly and are then progressively replaced by a third complex, C which is produced following cleavage and polyadenylation of precursor RNA. Substitution of ATP with cordycepin triphosphate prevents polyadenylation and the formation of complex C however a fourth complex, D, results which contains cleaved RNA. A precursor RNA lacking GU-rich downstream sequences required for efficient cleavage/ polyadenylation fails to form complex B and produces a markedly reduced amount of complex A. As these GU-rich sequences are required for efficient cleavage, this establishes a relationship between complex B formation and cleavage/polyadenylation of precursor RNA in vitro. The components required for in vitro RNA processing have been separated by fractionation of the nuclear extract on Q-Sepharose and Biorex 70 columns. A Q-Sepharose fraction forms complex B but does not process RNA. Addition of a Biorex 70 fraction restores cleavage activity at the poly A site but this fraction does not appear to contribute to complex formation. Moreover, in the absence of polyethylene glycol, precursor RNA is not cleaved and polyadenylated, however, complexes A and B readily form. Thus, while complex B is necessary for in vitro cleavage and polyadenylation, it may not contain all the components required for this processing

Economic evaluation of alternative farm water sources in the claypan area of Illinois

The claypan area of Illinois is characterized by unreliable water supplies. In addition, water quality problems have recently been recognized in the form of widespread nitrate coliform contamination of water in private wells in Washington County. A ten-square mile area in this county was selected for study. The nature of present water supplies was described and the costs of six alternative supply systems were estimated: (1) present on-farm sources, (2) treatment of pond water, (3) combination of present on-farm sources plus hauling, (4) hauling all water, (5) purchasing water from nearby municipality via pipeline, (6) combination pipeline plus on-farm sources. The six alternatives were examined in terms of the net present value of costs associated with each alternative, considering a 40-year planning period. Although the present sources proved to be the least costly they are unsatisfactory for reasons of health and also reliability. Treatment of pond water was the least-cost source of meeting the quality requirements for water for the total area. However, the reliability of this source and questions of personal preference against drinking pond water may indicate a preference among some users for connection with a municipal system which was somewhat more expensive.U.S. Geological SurveyU.S. Department of the InteriorOpe

Critical points in edge tunneling between generic FQH states

A general description of weak and strong tunneling fixed points is developed in the chiral-Luttinger-liquid model of quantum Hall edge states. Tunneling fixed points are a subset of `termination' fixed points, which describe boundary conditions on a multicomponent edge. The requirement of unitary time evolution at the boundary gives a nontrivial consistency condition for possible low-energy boundary conditions. The effect of interactions and random hopping on fixed points is studied through a perturbative RG approach which generalizes the Giamarchi-Schulz RG for disordered Luttinger liquids to broken left-right symmetry and multiple modes. The allowed termination points of a multicomponent edge are classified by a B-matrix with rational matrix elements. We apply our approach to a number of examples, such as tunneling between a quantum Hall edge and a superconductor and tunneling between two quantum Hall edges in the presence of interactions. Interactions are shown to induce a continuous renormalization of effective tunneling charge for the integrable case of tunneling between two Laughlin states. The correlation functions of electronlike operators across a junction are found from the B matrix using a simple image-charge description, along with the induced lattice of boundary operators. Many of the results obtained are also relevant to ordinary Luttinger liquids.Comment: 23 pages, 6 figures. Xiao-Gang Wen: http://dao.mit.edu/~we

Multi-locus sequence typing of Escherichia coli isolates with acquired ampC genes and ampC promoter mutations

© 2016 Elsevier Inc. Multi-locus sequence typing was used to reveal a high degree of diversity amongst the E. coli isolates with AmpC plasmid genes, and a high prevalence of the −32 mutation present

A note on the convergence of parametrised non-resonant invariant manifolds

Truncated Taylor series representations of invariant manifolds are abundant in numerical computations. We present an aposteriori method to compute the convergence radii and error estimates of analytic parametrisations of non-resonant local invariant manifolds of a saddle of an analytic vector field, from such a truncated series. This enables us to obtain local enclosures, as well as existence results, for the invariant manifolds

Chromosomal ampC mutations in cefpodoxime-resistant ESBL-negative uropathogenic escherichia coli

AmpC beta-lactamase is an enzyme commonly produced by Escherichia coli that causes resistance to cephalosporins and penicillins. Enzyme production is controlled by the strength of the promoter encoded by the chromosomal ampC gene, with the level of production affected by the presence of certain mutations in this region. This study sets out to determine the prevalence of ampC promoter mutations present in a group of uropathogenic E. coli strains. A total of 50 clinical strains of E. coli were collected from urine samples between June 2011 and November 2011. Strains were investigated for the presence of mutations in the chromosomal ampC promoter region by amplification and sequencing of a 271 bp product. The presence of ampC-carrying plasmids derived from other species was also determined, to exclude these from further analysis. ampC-carrying plasmids were found in 10 of the 50 strains, all of which were of the CIT-type. Analysis of the chromosomal ampC promoter region in the 40 remaining strains showed mutations at 16 different positions, with 18 different genotype patterns detected overall. The most common ampC chromosomal mutation, present in 25 of 40 strains, was a T→A transition at position -32. This mutation has been shown by others to increase enzyme production by up to 46-fold. Altogether, three separate mutations (-32, -42 and -13ins) were present in 90% of the 40 non-plasmid strains, indicating a strong association with the resistance observed. It appears, therefore, that the majority of AmpC-mediated resistance in E. coli can be accounted for by just three point mutations in the chromosome

Edge Dynamics in Quantum Hall Bilayers II: Exact Results with Disorder and Parallel Fields

We study edge dynamics in the presence of interlayer tunneling, parallel magnetic field, and various types of disorder for two infinite sequences of quantum Hall states in symmetric bilayers. These sequences begin with the 110 and 331 Halperin states and include their fractional descendants at lower filling factors; the former is easily realized experimentally while the latter is a candidate for the experimentally observed quantum Hall state at a total filling factor of 1/2 in bilayers. We discuss the experimentally interesting observables that involve just one chiral edge of the sample and the correlation functions needed for computing them. We present several methods for obtaining exact results in the presence of interactions and disorder which rely on the chiral character of the system. Of particular interest are our results on the 331 state which suggest that a time-resolved measurement at the edge can be used to discriminate between the 331 and Pfaffian scenarios for the observed quantum Hall state at filling factor 1/2 in realistic double-layer systems.Comment: revtex+epsf; two-up postscript at http://www.sns.ias.edu/~leonid/ntwoup.p

A Berger type normal holonomy theorem for complex submanifolds

We prove a kind of Berger-Simons' Theorem for the normal holonomy group of a complex submanifold of the projective spac

Impact of supplemental home enteral feeding postesophagectomy on nutrition, body composition, quality of life, and patient satisfaction

The aim of this prospective cohort study is to analyze the impact of supplemental home enteral nutrition (HEN) post-esophageal cancer surgery on nutritional parameters, quality of life (QL), and patient satisfaction. A systematic review reported that over 60% of patients lose \u3e10% of both body weight and BMI by 6 months after esophagectomy. Enteral feeding (EF) is increasingly a modern standard postoperatively; however, the impact of extended HEN postdischarge has not been systematically studied. One hundred forty-nine consecutive patients [mean age 62 ± 9, 80% male,76% adenocarcinoma, 66% on multimodal protocols, and 69% with BMI ≥ 25 kg/m2] were studied. Jejunal EF commenced day 1 postoperatively, and supplemental overnight HEN (764 kcal; 32g protein) continued on discharge for a planned further 4 weeks. Weight, BMI, and body composition analysis (bioimpedance analysis) were measured at baseline, preoperatively and at 1, 3, and 6 months, along with the EORTC QLQ-C30/OES18 QL measures. A patient satisfaction questionnaire addressed eight key items in relation to HEN (max score 100/item). Median (range) total duration of EF was 49 days (28-96). Overall compliance was 96%. At 6 months, compared with preoperatively, 58 (39%) patients lost \u3e10% weight, with median (IQR) loss of 6.8 (4-9) kg, and 62 (41%) patients lost \u3e10% BMI. Lean body mass and body fat were significantly (p \u3c 0.001) decreased. Mean global QL decreased (p \u3c 0.01) from 82 to 72. A high mean satisfaction score (\u3e70 ± 11/100) was reported, \u3e80 for practical training, activities of daily living, pain, anxiety, recovery and impact on caregivers, with lower scores for appetite (33 ± 24) and sleep (63 ± 30). Supplemental HEN for a minimum of one month postdischarge is associated with high compliance and patient satisfaction. Weight and BMI loss may still be substantial, however this may be less than published literature, in addition the impact on HR-QL may be attenuated. HEN has both subjective and objective rationale and merits further validation toward optimizing nutritional recovery and overall wellbeing

Soils and Climate... Of the Texas A&M University Research and Extension Center at Stephenville in Relation to the Cross Timbers Land Resource Area.

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