Fish dynamics in a coastal food chain: Simulation and analysis

This paper presents a model for simulation of fish biomass in coastal waters. The main fish processes simulated are adult growth, mortality, movement, spawning, and larval recruitment. The simulation is integrated into a large-scale ecological model, which includes physical processes and food-web interactions. An object-oriented framework has been used as a development platform. Some results are presented which provide insight into the population dynamics and distribution of a pelagic species, Engraulis encrasicolus (Linnaeus, 1758). The transfer of biomass through the food chain is analysed with the model, and some speculations are made concerning the type of feeding control found in this ecosystem. By analysing the capture of adult fish in the estuary, and the dynamics of the juvenile population, the direct and indirect value of ichthyofauna in the system has been estimated. This is important in determining the ‘ecosystem value' of the resource. The model was also used to test the impact on fish populations of different development scenarios. Potential nutrient increases due to urban growth on the southern shore of the estuary were compared to the reference situation, and impacts of increases in fish stock were examined.Este trabajo presenta un modelo para la simulación de una biomasa ictiológica en aguas costeras. Los principales procesos ictiológicos simulados aquí son crecimiento adulto, mortalidad, movimiento, desove y reclutamiento larval. La simulación está integrada en un modelo ecológico a gran escala que incluye procesos físicos e interacciones de la red trófica. Un marco objeto-orientado ha sido usado como plataforma de desarrollo. Se presentan resultados que proporcionan un conocimiento de la dinámica de población y distribución de una especie pelágica, Engraulis encrasicolus (Linnaeus, 1758). Con el modelo, se analiza la transferencia de biomasa a través de la cadena trófica, a la vez que se especula acerca del tipo de control trófico en este ecosistema. Ha sido analizado el valor directo e indirecto de la ictiofauna mediante el análisis de la captura de pescado adulto en el estuario y la dinámica de la población juvenil. Esto es de relevancia para la determinación del valor ecológico del recurso. El modelo también fue usado para probar el impacto de diferentes escenarios de desarrollo en la población ictiológica, el potencial incremento en la carga nutricional debido al crecimiento urbano en la costa sur del estuario, comparado con la situación de referencia, así como el impacto que producirán cambios en la población inicial sobre la producción de peces.Instituto Español de Oceanografí

Comparison of the complete genome sequencesof Bifidobacterium animalis subsp. lactis DSM 10140 and Bl-04

Bifidobacteria are important members of the human gut flora, especially in infants. Comparative genomic analysis of two Bifidobacterium animalis subsp. lactis strains revealed evolution by internal deletion of consecutive spacer-repeat units within a novel clustered regularly interspaced short palindromic repeat locus, which represented the largest differential content between the two genomes. Additionally, 47 single nucleotide polymorphisms were identified, consisting primarily of nonsynonymous mutations, indicating positive selection and/or recent divergence. A particular nonsynonymous mutation in a putative glucose transporter was linked to a negative phenotypic effect on the ability of the variant to catabolize glucose, consistent with a modification in the predicted protein transmembrane topology. Comparative genome sequence analysis of three Bifidobacterium species provided a core genome set of 1,117 orthologs complemented by a pan-genome of 2,445 genes. The genome sequences of the intestinal bacterium B. animalis subsp. lactis provide insights into rapid genome evolution and the genetic basis for adaptation to the human gut environment, notably with regard to catabolism of dietary carbohydrates, resistance to bile and acid, and interaction with the intestinal epithelium. The high degree of genome conservation observed between the two strains in terms of size, organization, and sequence is indicative of a genomically monomorphic subspecies and explains the inability to differentiate the strains by standard techniques such as pulsed-field gel electrophoresis

HIV-related stigma within communities of gay men: A literature review

While stigma associated with HIV infection is well recognised, there is limited information on the impact of HIV-related stigma between men who have sex with men and within communities of gay men. The consequences of HIV-related stigma can be personal and community-wide, including impacts on mood and emotional well-being, prevention, testing behaviour, and mental and general health. This review of the literature reports a growing division between HIV-positive and HIV-negative gay men, and a fragmentation of gay communities based along lines of perceived or actual HIV status. The literature includes multiple references to HIV stigma and discrimination between gay men, men who have sex with men, and among and between many gay communities. This HIV stigma takes diverse forms and can incorporate aspects of social exclusion, ageism, discrimination based on physical appearance and health status, rejection and violence. By compiling the available information on this understudied form of HIV-related discrimination, we hope to better understand and target research and countermeasures aimed at reducing its impact at multiple levels

PPARgamma inhibits hepatocellular carcinoma metastases in vitro and in mice

Background: We have previously demonstrated that peroxisome proliferator-activated receptor (PPARγ) activation inhibits hepatocarcinogenesis. We aim to investigate the effect of PPARγ on hepatocellular carcinoma (HCC) metastatic potential and explore its underlying mechanisms. Methods: Human HCC cells (MHCC97L, BEL-7404) were infected with adenovirus-expressing PPARγ (Ad-PPARγ) or Ad-lacZ and treated with or without PPARγ agonist (rosiglitazone). The effects of PPARγ on cell migration and invasive activity were determined by wound healing assay and Matrigel invasive model in vitro, and in an orthotopic liver tumour metastatic model in mice.Results:Pronounced expression of PPARγ was demonstrated in HCC cells (MHCC97L, BEL-7404) treated with Ad-PPARγ, rosiglitazone or Ad-PPARγ plus rosiglitazone, compared with control (Ad-LacZ). Such induction markedly suppressed HCC cell migration. Moreover, the invasiveness of MHCC97L and BEL-7404 cells infected with Ad-PPARγ, or treated with rosiglitazone was significantly diminished up to 60%. Combination of Ad-PPARγ and rosiglitazone showed an additive effect. Activation of PPARγ by rosiglitazone significantly reduced the incidence and severity of lung metastasis in an orthotopic HCC mouse model. Key mechanisms underlying the effect of PPARγ in HCC include upregulation of cell adhesion genes, E-cadherin and SYK (spleen tyrosine kinase), extracellular matrix regulator tissue inhibitors of metalloproteinase (TIMP) 3, tumour suppressor gene retinoblastoma 1, and downregulation of pro-metastatic genes MMP9 (matrix metallopeptidase 9), MMP13, HPSE (heparanase), and Hepatocyte growth factor (HGF). Direct transcriptional regulation of TIMP3, MMP9, MMP13, and HPSE by PPARγ was shown by ChIP-PCR. Conclusion: Peroxisome proliferator-activated receptor-gamma exerts an inhibitory effect on the invasive and metastatic potential of HCC in vitro and in vivo, and is thus, a target for the prevention and treatment of HCC metastases. © 2012 Cancer Research UK All rights reserved.published_or_final_versio

New cellular tools reveal complex epithelial–mesenchymal interactions in hepatocarcinogenesis

To enable detailed analyses of cell interactions in tumour development, new epithelial and mesenchymal cell lines were established from human hepatocellular carcinoma by spontaneous outgrowth in culture. We obtained several hepatocarcinoma (HCC)-, B-lymphoblastoid (BLC)-, and myofibroblastoid (MF)-lines from seven cases. In-depth characterisation included cell kinetics, genotype, tumourigenicity, expression of cell-type specific markers, and proteome patterns. Many functions of the cells of origin were found to be preserved. We studied the impact of the mesenchymal lines on hepatocarcinogenesis by in vitro assays. BLC- and MF-supernatants strongly increased the DNA replication of premalignant hepatocytes. The stimulation by MF-lines was mainly attributed to HGF secretion. In HCC-cells, MF-supernatant had only minor effects on cell growth but enhanced migration. MF-lines also stimulated neoangiogenesis through vEGF release. BLC-supernatant dramatically induced death of HCC-cells, which could be largely abrogated by preincubating the supernatant with TNFβ-antiserum. Thus, the new cell lines reveal stage-specific stimulatory and inhibitory interactions between mesenchymal and epithelial tumour cells. In conclusion, the new cell lines provide unique tools to analyse essential components of the complex interplay between the microenvironment and the developing liver cancer, and to identify factors affecting proliferation, migration and death of tumour cells, neoangiogenesis, and outgrowth of additional malignancy

Hepatic stellate cells:central modulators of hepatic carcinogenesis

Hepatocellular carcinoma (HCC) represents the second most common cause of cancer-related death worldwide, and is increasing in incidence. Currently, our therapeutic repertoire for the treatment of HCC is severely limited, and therefore effective new therapies are urgently required. Recently, there has been increasing interest focusing on the cellular and molecular interactions between cancer cells and their microenvironment. HCC represents a unique opportunity to study the relationship between a diseased stroma and promotion of carcinogenesis, as 90 % of HCCs arise in a cirrhotic liver. Hepatic stellate cells (HSC) are the major source of extracellular proteins during fibrogenesis, and may directly, or via secreted products, contribute to tumour initiation and progression. In this review we explore the complex cellular and molecular interplay between HSC biology and hepatocarcinogenesis. We focus on the molecular mechanisms by which HSC modulate HCC growth, immune cell evasion and angiogenesis. This is followed by a discussion of recent progress in the field in understanding the mechanistic crosstalk between HSC and HCC, and the pathways that are potentially amenable to therapeutic intervention. Furthermore, we summarise the exciting recent developments in strategies to target HSC specifically, and novel techniques to deliver pharmaceutical agents directly to HSC, potentially allowing tailored, cell-specific therapy for HCC

Nickel mass balance and isotopic records in a serpentinic weathering profile: Implications on the continental Ni budget

International audienceDuring serpentinite rock weathering, Ni is concentrated in the regolith owing to residual and secondary enrichment, forming a Ni-rich deposit under tropical conditions. This study presents geochemical, isotopic, and mineralogical data for Ni from the Serra do Puma Complex (SPC) weathering profile in Carajas (Brazil). The Ni fluxes, redistribution, and Ni isotopic fractionation magnitudes were quantified along the entire weathering profile: rock, saprock, lower and upper saprolite, and limonite. The results show that chlorite and serpentine are the primary Ni-scavenging phases in saprolite, whereas Fe oxyhydroxides are the main Ni-hosting minerals in the limonite unit. The mass balance model confirmed a global Ni gain at the weathered profile scale, with larger Ni enrichment in the upper saprolite. The isotopic dataset obtained in this study contributes greatly to the knowledge of the current Ni cycle on regional and global scales. The detailed insights into Ni isotopes in the SPC, coupled with chemical and mineralogical composition, allow for the first time a Ni mass balance and Ni isotopic values for an entire weathering profile in an Amazonian context. The Ni isotopic profile agrees with the preferential retention of light Ni isotopes in the residual material relative to the parent rock during weathering processes, with the Δ60Ni limonite-saprock of −0.72‰. In the SPC, major isotopic fractionation was notably recorded during saprolitization, while limonitization was accompanied by an overall Ni loss without significant Ni isotopic fractionation. As already observed in previous studies, heavier Ni isotopes, preferentially leached during weathering processes, can be further mobilized downward and lost from the profile or incorporated in secondary minerals in the saprolite and limonite sections. The Ni isotopic mass balance model indicated that the Ni loss from the weathered serpentinite profile was isotopically heavy, in agreement with the isotopically heavier composition of the dissolved load of Amazonian rivers. The isotopically light Ni pool, associated with the significant Ni gain encountered in the upper saprolite, is notable in the SPC weathering profile and confirms the existence of a light Ni isotope reservoir in the continent

Role of gap junctional intercellular communication in lymphangiogenesis and in prostate cancer cell adhesion to lymphatic endothelium

International audienc

Nickel distribution and isotopic fractionation in a Brazilian lateritic regolith: coupling Ni isotopes and Ni K-edge XANES.

Ultramafic (UM) rocks are known to be nickel (Ni) rich and to weather quickly, which makes them a good candidate to look at the Ni isotope systematics during weathering processes at the Earth’s surface. The present study aims at identifying the Ni solid speciation and discussing the weathering processes that produce Ni isotope fractionation in two deep laterite profiles under tropical conditions (Barro Alto, Goiás State, Brazil). While phyllosilicates and to a lower extent goethite are the main Ni-bearing phases in the saprolitic part of the profile, iron (Fe) oxides dominate the Ni budget in the lateritic unit. Nickel isotopic composition (δ60Ni values) has been measured in each unit of the regolith, i.e., rock, saprock, saprolite and laterite (n=52). δ60Ni varies widely within the two laterite profiles, from -0.10 ± 0.05‰ to 1.43 ± 0.05‰, showing that significant Ni isotope fractionation occurs during the weathering of UM rocks. Overall, our results show that during weathering, the solid phase is depleted in heavy Ni isotopes due to the preferential sorption and incorporation of light Ni isotopes into Fe oxides; the same mechanisms likely apply to the incorporation of Ni into phyllosilicates (type 2:1). However, an isotopically heavy Ni pool is observed in the solid phase at the bottom of the saprolitic unit. This feature can be explained by two hypotheses that are not mutually exclusive: i) a depletion in light Ni isotopes during the first stage of weathering due to the preferential dissolution of light Ni-containing minerals, and ii) the sorption or incorporation of isotopically heavy Ni carried by percolating waters (groundwater samples have δ60Ni of 2.20 and 2.27‰), that were enriched in heavy Ni isotopes due to successive weathering processes in the overlying soil and laterite units