SN 2006aj Associated with XRF 060218 At Late Phases: Nucleosynthesis-Signature of A Neutron Star-Driven Explosion

Optical spectroscopy and photometry of SN 2006aj have been performed with the Subaru telescope at t > 200 days after GRB060218, the X-ray Flash with which it was associated. Strong nebular emission-lines with an expansion velocity of v ~ 7,300 km/s were detected. The peaked but relatively broad [OI]6300,6363 suggests the existence of ~ 2 Msun of materials in which ~1.3 Msun is oxygen. The core might be produced by a mildly asymmetric explosion. The spectra are unique among SNe Ic in (1) the absence of [CaII]7291,7324 emission, and (2) a strong emission feature at ~ 7400A, which requires ~ 0.05 Msun of newly-synthesized 58Ni. Such a large amount of stable neutron-rich Ni strongly indicates the formation of a neutron star. The progenitor and the explosion energy are constrained to 18 Msun < Mms < 22 Msun and E ~ (1 - 3) 10^{51} erg, respectively.Comment: Accepted for Publication in the Astrophysical Journal Letters (2007, ApJ, 658, L5). 8 pages, including 1 table and 3 figures. Typos correcte

Higher order glass-transition singularities in colloidal systems with attractive interactions

The transition from a liquid to a glass in colloidal suspensions of particles interacting through a hard core plus an attractive square-well potential is studied within the mode-coupling-theory framework. When the width of the attractive potential is much shorter than the hard-core diameter, a reentrant behavior of the liquid-glass line, and a glass-glass-transition line are found in the temperature-density plane of the model. For small well-width values, the glass-glass-transition line terminates in a third order bifurcation point, i.e. in a A_3 (cusp) singularity. On increasing the square-well width, the glass-glass line disappears, giving rise to a fourth order A_4 (swallow-tail) singularity at a critical well width. Close to the A_3 and A_4 singularities the decay of the density correlators shows stretching of huge dynamical windows, in particular logarithmic time dependence.Comment: 19 pages, 12 figures, Phys. Rev. E, in prin

Reverberation Mapping Results from MDM Observatory

We present results from a multi-month reverberation mapping campaign undertaken primarily at MDM Observatory with supporting observations from around the world. We measure broad line region (BLR) radii and black hole masses for six objects. A velocity-resolved analysis of the H_beta response shows the presence of diverse kinematic signatures in the BLR.Comment: To appear in the Proceedings of the IAU Symposium No. 267: Co-Evolution of Central Black Holes and Galaxies, Rio de Janeiro, 200

Cosmological Implications of the Very High Redshift GRB 050904

We report near simultaneous multi-color (RIYJHK) observations made with the MAGNUM 2m telescope of the gamma ray burst GRB 050904 detected by the SWIFT satellite. The spectral energy distribution shows a very large break between the I and J bands. Using intergalactic transmissions measured from high redshift quasars we show that the observations place a 95% confidence lower limit of z=6.18 on the object, consistent with a later measured spectroscopic redshift of 6.29 obtained by Kawai et al. (2005) with the Subaru telescope. We show that the break strength in the R and I bands is consistent with that measured in the quasars. Finally we consider the implications for the star formation history at high redshift.Comment: Accepted for publication in the Astrophysical Journal. Expanded introduction and discussio

The GTOP database in 2009: updated content and novel features to expand and deepen insights into protein structures and functions

The Genomes TO Protein Structures and Functions (GTOP) database (http://spock.genes.nig.ac.jp/~genome/gtop.html) freely provides an extensive collection of information on protein structures and functions obtained by application of various computational tools to the amino acid sequences of entirely sequenced genomes. GTOP contains annotations of 3D structures, protein families, functions, and other useful data of a protein of interest in user-friendly ways to give a deep insight into the protein structure. From the initial 1999 version, GTOP has been continually updated to reap the fruits of genome projects and augmented to supply novel information, in particular intrinsically disordered regions. As intrinsically disordered regions constitute a considerable fraction of proteins and often play crucial roles especially in eukaryotes, their assignments give important additional clues to the functionality of proteins. Additionally, we have incorporated the following features into GTOP: a platform independent structural viewer, results of HMM searches against SCOP and Pfam, secondary structure predictions, color display of exon boundaries in eukaryotic proteins, assignments of gene ontology terms, search tools, and master files

The Peculiar Type Ib Supernova 2006jc: A WCO Wolf-Rayet Star Explosion

We present a theoretical model for Type Ib supernova (SN) 2006jc. We calculate the evolution of the progenitor star, hydrodynamics and nucleosynthesis of the SN explosion, and the SN bolometric light curve (LC). The synthetic bolometric LC is compared with the observed bolometric LC constructed by integrating the UV, optical, near-infrared (NIR), and mid-infrared (MIR) fluxes. The progenitor is assumed to be as massive as $40M_\odot$ on the zero-age main-sequence. The star undergoes extensive mass loss to reduce its mass down to as small as $6.9M_\odot$, thus becoming a WCO Wolf-Rayet star. The WCO star model has a thick carbon-rich layer, in which amorphous carbon grains can be formed. This could explain the NIR brightening and the dust feature seen in the MIR spectrum. We suggest that the progenitor of SN 2006jc is a WCO Wolf-Rayet star having undergone strong mass loss and such massive stars are the important sites of dust formation. We derive the parameters of the explosion model in order to reproduce the bolometric LC of SN 2006jc by the radioactive decays: the ejecta mass $4.9M_\odot$, hypernova-like explosion energy $10^{52}$ ergs, and ejected $^{56}$Ni mass $0.22M_\odot$. We also calculate the circumstellar interaction and find that a CSM with a flat density structure is required to reproduce the X-ray LC of SN 2006jc. This suggests a drastic change of the mass-loss rate and/or the wind velocity that is consistent with the past luminous blue variable (LBV)-like event.Comment: 12 pages, 11 figures. Accepted for publication in the Astrophysical Journa

Status of the Bio-Nano electron cyclotron resonance ion source at Toyo University

In the paper, the material science experiments, carried out recently using the Bio-Nano electron cyclotron resonance ion source (ECRIS) at Toyo University, are reported. We have investigated several methods to synthesize endohedral C60 using ion-ion and ion-molecule collision reaction in the ECRIS. Because of the simplicity of the configuration, we can install a large choice of additional equipment in the ECRIS. The Bio-Nano ECRIS is suitable not only to test the materials production but also to test technical developments to improve or understand the performance of an ECRIS