Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel

A major use of the 1000 Genomes Project (1000GP) data is genotype imputation in genome-wide association studies (GWAS). Here we develop a method to estimate haplotypes from low-coverage sequencing data that can take advantage of single-nucleotide polymorphism (SNP) microarray genotypes on the same samples. First the SNP array data are phased to build a backbone (or 'scaffold') of haplotypes across each chromosome. We then phase the sequence data 'onto' this haplotype scaffold. This approach can take advantage of relatedness between sequenced and non-sequenced samples to improve accuracy. We use this method to create a new 1000GP haplotype reference set for use by the human genetic community. Using a set of validation genotypes at SNP and bi-allelic indels we show that these haplotypes have lower genotype discordance and improved imputation performance into downstream GWAS samples, especially at low-frequency variants. © 2014 Macmillan Publishers Limited. All rights reserved

Effect of surface chemistry on electrochemical storage of hydrogen in porous carbon materials

Porous carbon materials, with different porosities and surface chemistry have been prepared and characterized to obtain a better understanding of the mechanism of the electrochemical storage of hydrogen. The hydrogen storage capacity depends, not only on the porosity of the material, but also on the surface chemistry, which is a critical factor. The results show that the higher the amount of surface oxygen groups, the lower is the hydrogen uptake. Measurement of the number of active carbon sites shows the important role of the unsaturated carbon atoms in the process. In situ Raman spectroscopy has been used in order to further explore the structural changes in the carbon material during the charge–discharge processes. This technique has allowed us to observe the formation of the C(sp2)AH bonds during the cathodic process and its reversibility during the oxidation step.MEC and FEDER for financial support (Project CTQ2006-08958/PPQ) and Ministerio de Fomento (70012/t05-fomento05 project)