Nuclear DDX3 expression predicts poor outcome in colorectal and breast cancer

Purpose: DEAD box protein 3 (DDX3) is an RNA helicase with oncogenic properties that shuttles between the cytoplasm and nucleus. The majority of DDX3 is found in the cytoplasm, but a subset of tumors has distinct nuclear DDX3 localization of yet unknown biological significance. This study aimed to evaluate the significance of and mechanisms behind nuclear DDX3 expression in colorectal and breast cancer. Methods: Expression of nuclear DDX3 and the nuclear exporter chromosome region maintenance 1 (CRM1) was evaluated by immunohistochemistry in 304 colorectal and 292 breast cancer patient samples. Correlations between the subcellular localization of DDX3 and CRM1 and the difference in overall survival between patients with and without nuclear DDX3 were studied. In addition, DDX3 mutants were created for in vitro evaluation of the mechanism behind nuclear retention of DDX3. Results: DDX3 was present in the nucleus of 35% of colorectal and 48% of breast cancer patient samples and was particularly strong in the nucleolus. Nuclear DDX3 correlated with worse overall survival in both colorectal (hazard ratio [HR] 2.34, P<0.001) and breast cancer (HR 2.39, P=0.004) patients. Colorectal cancers with nuclear DDX3 expression more often had cytoplasmic expression of the nuclear exporter CRM1 (relative risk 1.67, P=0.04). In vitro analysis of DDX3 deletion mutants demonstrated that CRM1-mediated export was most dependent on the N-terminal nuclear export signal. Conclusion: Overall, we conclude that nuclear DDX3 is partially CRM1-mediated and predicts worse survival in colorectal and breast cancer patients, putting it forward as a target for therapeutic intervention with DDX3 inhibitors under development in these cancer types

Cryo-FIB Machining: An Alternative to TEM Cryo-Sections Cut with Diamonds?

Extended abstract of a paper presented at Microscopy and Microanalysis 2011 in Nashville, Tennessee, USA, August 7-August 11, 201

Killer cell proteases can target viral immediate-early proteins to control human cytomegalovirus infection in a noncytotoxic manner.

Human cytomegalovirus (HCMV) is the most frequent viral cause of congenital defects and can trigger devastating disease in immune-suppressed patients. Cytotoxic lymphocytes (CD8+ T cells and NK cells) control HCMV infection by releasing interferon-γ and five granzymes (GrA, GrB, GrH, GrK, GrM), which are believed to kill infected host cells through cleavage of intracellular death substrates. However, it has recently been demonstrated that the in vivo killing capacity of cytotoxic T cells is limited and multiple T cell hits are required to kill a single virus-infected cell. This raises the question whether cytotoxic lymphocytes can use granzymes to control HCMV infection in a noncytotoxic manner. Here, we demonstrate that (primary) cytotoxic lymphocytes can block HCMV dissemination independent of host cell death, and interferon-α/β/γ. Prior to killing, cytotoxic lymphocytes induce the degradation of viral immediate-early (IE) proteins IE1 and IE2 in HCMV-infected cells. Intriguingly, both IE1 and/or IE2 are directly proteolyzed by all human granzymes, with GrB and GrM being most efficient. GrB and GrM cleave IE1 after Asp398 and Leu414, respectively, likely resulting in IE1 aberrant cellular localization, IE1 instability, and functional impairment of IE1 to interfere with the JAK-STAT signaling pathway. Furthermore, GrB and GrM cleave IE2 after Asp184 and Leu173, respectively, resulting in IE2 aberrant cellular localization and functional abolishment of IE2 to transactivate the HCMV UL112 early promoter. Taken together, our data indicate that cytotoxic lymphocytes can also employ noncytotoxic ways to control HCMV infection, which may be explained by granzyme-mediated targeting of indispensable viral proteins during lytic infection

Cation Exchange and Spontaneous Crystal Repair Resulting in Ultrathin, Planar CdS Nanosheets

Cation exchange has become a major postsynthetic tool to obtain nanocrystals with a combination of stoichiometry, size, and shape that is challenging to achieve by direct wet-chemical synthesis. Here, we report on the transformation of highly anisotropic, ultrathin, and planar PbS nanosheets into CdS nanosheets of the same dimensions. We monitor the evolution of the Cd-for-Pb exchange by ex-situ TEM, HAADF-STEM, and EDX. We observe that in the early stages of the exchange the sheets show large in-sheet voids that repair spontaneously upon further exchange and annealing, resulting in ultrathin, planar, and crystalline CdS nanosheets. After cation exchange, the nanosheets show broad sub-band gap luminescence, as often observed in CdS nanocrystals. The photoluminescence excitation spectrum reveals the heavy- and light-hole exciton features, with very strong quantum confinement and large electron–hole Coulomb energy, typical for 2D ultrathin Cd-chalcogenide nanosheets

Silica as support and binder in bifunctional catalysts with ultralow Pt loadings for the hydroconversion of n-alkanes

Hydroconversion is a key step in the production of ultraclean fuels from renewable sources. This reaction is carried out using a bifunctional catalyst consisting of a base metal sulfide or a noble metal and a solid acid. Recently, we have shown that for Pt/Al2O3/ZSM-22 catalysts with low Pt loadings (≤0.01 wt%) it is advantageous – to both the activity as well as the isomer selectivity - to emplace the Pt on the zeolite crystallites instead of on the Al2O3 binder. When these low loadings of Pt were on the alumina binder, small clusters or even single atoms were present which were hard to reduce leading to inactivity of the catalysts. Herein, we explore the replacement of alumina by silica, and the performance of catalysts with ultralow Pt loadings on the conversion of longer-chain hydrocarbons. A series of Pt/SiO2/ZSM-22 catalysts with varying Pt weight loadings (0.001, 0.005, 0.01, 0.05, 0.1 and 0.5 wt%) and location (on silica or on ZSM-22) was prepared and characterized using ICP, NH3-TPD, HAADF-STEM and XAS. Their hydroconversion performance was evaluated using n-heptane and n-hexadecane as model feedstocks. As for the Pt/Al2O3/ZSM-22 catalysts systems, for Pt/SiO2/ZSM-22 catalysts with low Pt loadings (≤0.01 wt% for n-heptane conversion) it was beneficial to have the Pt nanoparticles on the ZSM-22 crystals. Hydroconversion of n-hexadecane over Pt/SiO2/ZSM-22 and Pt/Al2O3/ZSM-22 catalysts showed that for feedstocks with a higher molecular weight, higher Pt loadings (≥0.05 wt%) are required for sufficient catalytic performance. For the conversion of n-hexadecane it was beneficial to locate these higher amounts of Pt on the binder

Influence of carbon support surface modification on the performance of nickel catalysts in carbon dioxide hydrogenation

The interaction between metal nanoparticles and a support is of key importance in catalysis. In this study, we demonstrate that the introduction of oxygen- or nitrogen-containing surface groups on a graphite nanoplatelet support influences the performance of nickel supported catalysts during CO2 hydrogenation. By careful design of the synthesis conditions, the Ni nanoparticle size of the fresh catalysts was not affected by the type of support surface groups. A combination of H2 chemisorption and high resolution TEM demonstrates that the available metal surface depends on the interaction with the carbon support. The amination treatment to introduce nitrogen-containing groups results in the weakest interaction between the Ni and the support, showing the highest initial Ni weight-based activity, although at the expense of nanoparticle stability. Hence initial enhancement in activity is not always optimal for long term catalysis. The use of carbon with a higher density of oxygen functional groups that are stable above 350 °C, is beneficial for preventing deactivation due to particle growth. Furthermore, small amounts of contaminants can have a substantial influence on the CH4 selectivity at low conversions

Influence of carbon support surface modification on the performance of nickel catalysts in carbon dioxide hydrogenation

The interaction between metal nanoparticles and a support is of key importance in catalysis. In this study, we demonstrate that the introduction of oxygen- or nitrogen-containing support surface groups on a graphite nanoplatelet support influence the performance of nickel supported catalysts during CO2 hydrogenation. By careful design of the synthesis conditions, the Ni nanoparticle size of the fresh catalysts was not affected by the type of support surface groups. A combination of H2 chemisorption and high resolution TEM demonstrates that the available metal surface depends on the interaction with the carbon support. The amination treatment results in the weakest interaction between the Ni and the support, showing the highest initial Ni weight-based activity, although at the expense of nanoparticle stability. Hence initial enhancement in activity is not always optimal for long term catalysis. The use of carbon with a higher density of oxygen functional groups that are stable above 350 °C, is beneficial for preventing deactivation due to particle growth. Furthermore, small amounts of contaminants can have a substantial influence on the CH4 selectivity at low conversions

Cleavage of Notch1 by granzyme B disables its transcriptional activity

International audienceGranzyme-mediated cell death is the main pathway for cytotoxic lymphocytes to kill virus-infected and tumor cells. A major player in this process is granzyme B (GrB), which triggers apoptosis in both caspase-dependent and caspase-independent manners. A caspase-independent substrate of GrB is the highly conserved transmembrane receptor Notch1. The GrB cleavage sites in Notch1 and functional consequences of Notch1 cleavage by GrB were unknown. We confirmed that Notch1 is a direct and caspase-independent substrate of GrB. We demonstrate that GrB cleaved the intracellular Notch1 domain at least at two distinct aspartic acids D1860 and D1961. Granzyme B cleavage of Notch1 can occur in all subcellular compartments, during maturation of the receptor, at the membrane, and in the nucleus. GrB also displayed perforin-independent functions by cleaving the extracellular domain of Notch1. Overall, cleavage of Notch1 by GrB resulted in a loss of transcriptional activity, independent of Notch1 activation. We conclude that GrB disables Notch1 function, likely resulting in anti-cellular proliferation and cell death signals