Novel and natural knockout lung cancer cell lines for the LKB1/STK11 tumor suppressor gene

Germline mutations of the LKB1 gene are responsible for Peutz-Jeghers syndrome (PJS), an autosomal dominant inherited disorder bestowing an increased risk of cancer. We have recently demonstrated that LKB1 inactivating mutations are not confined to PJS, but also appear in lung adenocarcinomas of sporadic origin, including primary tumors and lung cancer cell lines. To accurately determine the frequency of inactivating LKB1 gene mutations in lung tumors we have sequenced the complete coding region of LKB1 in 21 additional lung cancer cell lines. Here we describe the mutational status of LKB1 gene in 30 lung cancer cell lines from different histopathological types, including 11 lung adenocarcinomas (LADs) and 11 small cell lung cancers (SCLCs). LKB1 gene alterations were present in six (54%) of the LAD cell lines tested but in none of the other histological types. Similar to our previous observations in primary tumors, all point mutations were of the nonsense or frameshift type, leading to an abnormal, truncated protein. Moreover, 2 cell lines (A427 and H2126) harbored large gene deletions that spanned several exons. Hence, we have identified additional lung cancer cell lines carrying inactivating mutations of the LKB1 tumor suppressor gene, further attesting to the significance of this gene in the development of LADs and providing new natural LKB1 knockouts for studies of the biological function of the LKB1 protein

Interactive effects of vertical mixing, nutrients and ultraviolet radiation: In situ photosynthetic responses of phytoplankton from high mountain lakes of Southern Europe.

Global change, together with human activities, has resulted in increasing amounts of organic material (includ-ing nutrients) that water bodies receive. This input further attenuates the penetration of solar radiation, leading to the view that opaque lakes are more “protected” from solar ul-traviolet radiation (UVR) than clear ones. Vertical mixing, however, complicates this view as cells are exposed to fluc-tuating radiation regimes, for which the effects have, in gen-eral, been neglected. Furthermore, the combined impacts of mixing, together with those of UVR and nutrient inputs are virtually unknown. In this study, we carried out complex in situ experiments in three high mountain lakes of Spain (Lake Enol in the National Park Picos de Europa, Asturias, and lakes Las Yeguas and La Caldera in the National Park Sierra Nevada, Granada), used as model ecosystems to evaluate the joint impact of these climate change variables. The main goal of this study was to address the question of how short-term pulses of nutrient inputs, together with vertical mixing and increased UVR fluxes modify the photosynthetic responses of phytoplankton. The experimentation consisted in all pos-sible combinations of the following treatments: (a) solar radi-ation: UVR + PAR (280–700 nm) versus PAR (photosynthet-ically active radiation) alone (400–700 nm); (b) nutrient ad-dition (phosphorus (P) and nitrogen (N)): ambient versus ad-dition (P to reach to a final concentration of 30 µg P L−1, and N to reach N:P molar ratio of 31); and (c) mixing: mixed (one rotation from surface to 3 m depth (speed of 1 m 4 min−1, to-tal of 10 cycles)) versus static. Our findings suggest that un-der ambient nutrient conditions there is a synergistic effect between vertical mixing and UVR, increasing phytoplank-ton photosynthetic inhibition and excretion of organic carbon (EOC) from opaque lakes as compared to algae that received constant mean irradiance within the epilimnion. The opposite occurs in clear lakes where antagonistic effects were deter-mined, with mixing partially counteracting the negative ef-fects of UVR. Nutrient input, mimicking atmospheric pulses from Saharan dust, reversed this effect and clear lakes be-came more inhibited during mixing, while opaque lakes ben-efited from the fluctuating irradiance regime. These climate change related scenarios of nutrient input and increased mix-ing, would not only affect photosynthesis and production in lakes, but might also further influence the microbial loop and trophic interactions via enhanced EOC under fluctuat-ing UVR exposure.Fil: Helbling, Eduardo Walter. Fundación Playa Unión. Estación de Fotobiología Playa Unión; Argentina;Fil: Carrillo, P.. Universidad de Granada. Instituto Universitario de Investigación del Agua; España;Fil: Medina Sanchez, J. M.. Universidad de Granada. Facultad de Ciencias. Departamento de Ecología; España;Fil: Durán, C.. Universidad de Granada. Instituto Universitario de Investigación del Agua; España;Fil: Herrera, G.. Universidad de Granada. Instituto Universitario de Investigación del Agua; España;Fil: Villar Argaiz, M.. Universidad de Granada. Facultad de Ciencias. Departamento de Ecología; España;Fil: Villafañe, Virginia Estela. Fundación Playa Unión. Estación de Fotobiología Playa Unión; Argentina

T-cell-derived miRNA-214 mediates perivascular fibrosis in hypertension

RATIONALE: Despite increasing understanding of the prognostic importance of vascular stiffening linked to perivascular fibrosis in hypertension, the molecular and cellular regulation of this process is poorly understood. OBJECTIVES: To study the functional role of microRNA-214 (miR-214) in the induction of perivascular fibrosis and endothelial dysfunction driving vascular stiffening. METHODS AND RESULTS: Out of 381 miRs screened in the perivascular tissues in response to Ang II (angiotensin II)-mediated hypertension, miR-214 showed the highest induction (8-fold, P=0.0001). MiR-214 induction was pronounced in perivascular and circulating T cells, but not in perivascular adipose tissue adipocytes. Global deletion of miR-214-/- prevented Ang II-induced periaortic fibrosis, Col1a1, Col3a1, Col5a1, and Tgfib1 expression, hydroxyproline accumulation, and vascular stiffening, without difference in blood pressure. Mechanistic studies revealed that miR-214-/- mice were protected against endothelial dysfunction, oxidative stress, and increased Nox2, all of which were induced by Ang II in WT mice. Ang II-induced recruitment of T cells into perivascular adipose tissue was abolished in miR-214-/- mice. Adoptive transfer of miR-214-/- T cells into RAG1-/- mice resulted in reduced perivascular fibrosis compared with the effect of WT T cells. Ang II nduced hypertension caused significant change in the expression of 1380 T cell genes in WT, but only 51 in miR-214-/-. T cell activation, proliferation and chemotaxis pathways were differentially affected. MiR-214-/- prevented Ang II-induction of profibrotic T cell cytokines (IL-17, TNF-a, IL-9, and IFN-y) and chemokine receptors (CCR1, CCR2, CCR4, CCR5, CCR6, and CXCR3). This manifested in reduced in vitro and in vivo T cell chemotaxis resulting in attenuation of profibrotic perivascular inflammation. Translationally, we show that miR-214 is increased in plasma of patients with hypertension and is directly correlated to pulse wave velocity as a measure of vascular stiffness. CONCLUSIONS: T-cell-derived miR-214 controls pathological perivascular fibrosis in hypertension mediated by T cell recruitment and local profibrotic cytokine release

A blast fungus zinc-finger fold effector binds to a hydrophobic pocket in host Exo70 proteins to modulate immune recognition in rice

イネがいもち病菌を見つける「目印」の構造を解明. 京都大学プレスリリース. 2022-10-21.Exocytosis plays an important role in plant–microbe interactions, in both pathogenesis and symbiosis. Exo70 proteins are integral components of the exocyst, an octameric complex that mediates tethering of vesicles to membranes in eukaryotes. Although plant Exo70s are known to be targeted by pathogen effectors, the underpinning molecular mechanisms and the impact of this interaction on infection are poorly understood. Here, we show the molecular basis of the association between the effector AVR-Pii of the blast fungus Maganaporthe oryzae and rice Exo70 alleles OsExo70F2 and OsExo70F3, which is sensed by the immune receptor pair Pii via an integrated RIN4/NOI domain. The crystal structure of AVR-Pii in complex with OsExo70F2 reveals that the effector binds to a conserved hydrophobic pocket in Exo70, defining an effector/target binding interface. Structure-guided and random mutagenesis validates the importance of AVR-Pii residues at the Exo70 binding interface to sustain protein association and disease resistance in rice when challenged with fungal strains expressing effector mutants. Furthermore, the structure of AVR-Pii defines a zinc-finger effector fold (ZiF) distinct from the MAX (Magnaporthe Avrs and ToxB-like) fold previously described for a majority of characterized M. oryzae effectors. Our data suggest that blast fungus ZiF effectors bind a conserved Exo70 interface to manipulate plant exocytosis and that these effectors are also baited by plant immune receptors, pointing to new opportunities for engineering disease resistance

The catalog-to-cosmology framework for weak lensing and galaxy clustering for LSST

We present TXPipe, a modular, automated and reproducible pipeline for ingesting catalog data and performing all the calculations required to obtain quality-assured two-point measurements of lensing and clustering, and their covariances, with the metadata necessary for parameter estimation. The pipeline is developed within the Rubin Observatory Legacy Survey of Space and Time (LSST) Dark Energy Science Collaboration (DESC), and designed for cosmology analyses using LSST data. In this paper, we present the pipeline for the so-called 3x2pt analysis – a combination of three two-point functions that measure the auto- and cross-correlation between galaxy density and shapes. We perform the analysis both in real and harmonic space using TXPipe and other LSST-DESC tools. We validate the pipeline using Gaussian simulations and show that it accurately measures data vectors and recovers the input cosmology to the accuracy level required for the first year of LSST data under this simplified scenario. We also apply the pipeline to a realistic mock galaxy sample extracted from the CosmoDC2 simulation suite (Korytov et al. 2019). TXPipe establishes a baseline framework that can be built upon as the LSST survey proceeds. Furthermore, the pipeline is designed to be easily extended to science probes beyond the 3x2pt analysis