The South African Mesozoic: advances in our understanding of the evolution, palaeobiogeography, and palaeoecology of sauropodomorph dinosaurs

A dissertation submitted to the Faculty of Science, University of the Witwatersrand, in partial fulfilment of the requirements for the degree of Doctor of Philosophy. Johannesburg, 2016.The Palaeontological record of South Africa is remarkable in that it preserves the two major temporal transitions of the Mesozoic: The Triassic–Jurassic boundary (the Elliot Formation) and the earliest depositional stages of the Cretaceous (the Kirkwood Formation). Work within the Elliot Formation has reiterated the importance of this horizon for our understanding of the early evolution and subsequent radiation/diversification of basal sauropodomorph dinosaurs. Moreover, inextricably contained within this radiation is the early evolution of the columnar-limbed, long necked sauropods, the largest terrestrial animals to have ever evolved. The Elliot Formation therefore imparts vital information on the genesis of the group that would become the dominant dinosaurian herbivores throughout most of the Mesozoic. However, several outstanding issues obscure a full understanding of this important radiation. Of primary concern is the complicated taxonomy of the sauropodomorphs of the Upper Triassic lower Elliot Formation and a lack of current consensus as to what precisely constitutes a true sauropod. The latter issue is further complicated by a lack of well-preserved sauropod material prior to the Toarcian. The discovery of new, associated material from both the lower and upper Elliot Formation has direct relevance to both of these concerns. Specifically, although the genus Eucnemesaurus is supported in the current analysis, the bauplan diversity of lower Elliot Sauropodomorpha remains relatively conservative save for the stocky pedal architecture of Blikanasaurus and the autapomorphically robust morphology of a newly rediscovered ilium that is potentially referable to it. Within the upper Elliot Formation, a recently discovered highly apomorphic bone-bed is diagnosed as a new species of sauropod that, in addition to placing the earliest unequivocal sauropods within the basal rocks of the Jurassic, suggests the underlying ecological factors driving the divergence of the derived sauropodan bauplan. In addition to new information provided by the Elliot Formation, two decades’ worth of collecting from the Early Cretaceous Kirkwood Formation affords a long overdue insight into the sauropod fauna occupying southern Gondwana at the outset of the Cretaceous. The surprising diversity of forms recognized from the Kirkwood suggests that the taxonomic decline of Sauropoda previously inferred for the earliest Cretaceous is a product of sampling bias compounded by a generally poor fossil record. However, a lack of absolute dates for the Kirkwood Formation means that the plethora of “Jurassic-type” specimens is potentially explicable via their being contemporaneous with similar Late Jurassic faunas of eastern Africa and North America.LG201

The anatomy and phylogenetic relationships of antetonitrus ingenipes (sauropodiformes, dinosauria): implications for the origins of Sauropoda

A dissertation submitted to the Faculty of Science, University of the Witwatersrand, in partial fulfilment of the requirements for the degree of Master of Science. Johannesburg, 2013A thorough description and cladistic analysis of the Antetonitrus ingenipes type material sheds further light on the stepwise acquisition of sauropodan traits just prior to the Triassic/Jurassic boundary. Although the forelimb of Antetonitrus and other closely related sauropododomorph taxa retains the plesiomorphic morphology typical of a mobile grasping structure, the changes in the weight-bearing dynamics of both the musculature and the architecture of the hindlimb document the progressive shift towards a sauropodan form of graviportal locomotion. Nonetheless, the presence of hypertrophied muscle attachment sites in Antetonitrus suggests the retention of an intermediary form of facultative bipedality. The term Sauropodiformes is adopted here and given a novel definition intended to capture those transitional sauropodomorph taxa occupying a contiguous position on the pectinate line towards Sauropoda. The early record of sauropod diversification and evolution is re-examined in light of the paraphyletic consensus that has emerged regarding the ‘Prosauropoda’ in recent years

The sauropodomorph biostratigraphy of the ElliotFormation of southern Africa: Tracking the evolution ofSauropodomorpha across the Triassic–Jurassic boundary

The latest Triassic is notable for coinciding with the dramatic decline of many previously dominant groups, followed by the rapid radiation of Dinosauria in the Early Jurassic. Among the most common terrestrial vertebrates from this time, sauropodomorph dinosaurs provide an important insight into the changing dynamics of the biota across the Triassic–Jurassic boundary. The Elliot Formation of South Africa and Lesotho preserves the richest assemblage of sauropodomorphs known from this age, and is a key index assemblage for biostratigraphic correlations with other similarly-aged global terrestrial deposits. Past assessments of Elliot Formation biostratigraphy were hampered by an overly simplistic biozonation scheme which divided it into a lower “Euskelosaurus” Range Zone and an upper Massospondylus Range Zone. Here we revise the zonation of the Elliot Formation by: (i) synthesizing the last three decades’ worth of fossil discoveries, taxonomic revision, and lithostratigraphic investigation; and (ii) systematically reappraising the stratigraphic provenance of important fossil locations. We then use our revised stratigraphic information in conjunction with phylogenetic character data to assess morphological disparity between Late Triassic and Early Jurassic sauropodomorph taxa. Our results demonstrate that the Early Jurassic upper Elliot Formation is considerably more taxonomically and morphologically diverse than previously thought. In contrast, the sauropodomorph fauna of the Late Triassic lower Elliot Formation remains relatively poorly understood due to the pervasive incompleteness of many key specimens, as well as the relative homogeneity of their diagnostic character suites. Our metrics indicate that both Elliot Formation and global sauropodomorph assemblages had greater morphological disparity within the Early Jurassic than the Late Triassic. This result is discussed in the context of changing palaeoclimatic conditions, as well as macroevolutionary events associated with the end-Triassic extinction

Predation by Bears Drives Senescence in Natural Populations of Salmon

Classic evolutionary theory predicts that populations experiencing higher rates of environmentally caused (“extrinsic”) mortality should senesce more rapidly, but this theory usually neglects plausible relationships between an individual's senescent condition and its susceptibility to extrinsic mortality. We tested for the evolutionary importance of this condition dependence by comparing senescence rates among natural populations of sockeye salmon (Oncorhynchus nerka) subject to varying degrees of predation by brown bears (Ursus arctos). We related senescence rates in six populations to (1) the overall rate of extrinsic mortality, and (2) the degree of condition dependence in this mortality. Senescence rates were determined by modeling the mortality of individually-tagged breeding salmon at each site. The overall rate of extrinsic mortality was estimated as the long-term average of the annual percentage of salmon killed by bears. The degree of condition dependence was estimated as the extent to which bears killed salmon that exhibited varying degrees of senescence. We found that the degree of condition dependence in extrinsic mortality was very important in driving senescence: populations where bears selectively killed fish showing advanced senescence were those that senesced least rapidly. The overall rate of extrinsic mortality also contributed to among-population variation in senescence-but to a lesser extent. Condition-dependent susceptibility to extrinsic mortality should be incorporated more often into theoretical models and should be explicitly tested in natural populations

Untangling the dinosaur family tree

For over a century, the standard classification scheme has split dinosaurs into two fundamental groups: ‘lizard-hipped’ saurischians (including meat-eating theropods and long-necked sauropodomorphs) and ‘bird-hipped’ ornithischians (including a variety of herbivorous species).In a recent paper, Baron et al. challenged this paradigm with a new phylogenetic analysis that places theropods and ornithischians together in a group called Ornithoscelida, to the exclusion of sauropodomorphs, and used their phylogeny to argue that dinosaurs may have originated in northern Pangaea, not in the southern part of the supercontinent, as has more commonly been considered. Here we evaluate and reanalyse the morphological dataset underpinning the proposal by Baron et al. and provide quantitative biogeographic analyses, which challenge the key results of their study by recovering a classical monophyletic Saurischia and a Gondwanan origin for dinosaurs. This shows that the Ornithoscelida hypothesis is not the final word, and that there is still great uncertainty around the basic structure of the dinosaur family tree.Fil: Langer, Max C.. Universidade de Sao Paulo; BrasilFil: Ezcurra, Martin Daniel. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales “Bernardino Rivadavia”; ArgentinaFil: Rauhut, Oliver Walter Mischa. Ludwig Maximilians Universitat; AlemaniaFil: Benton, Michael J.. University of Bristol; Reino UnidoFil: Knoll, Fabien. University of Manchester; Reino UnidoFil: McPhee, Blair W.. Universidade de Sao Paulo; BrasilFil: Novas, Fernando Emilio. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales “Bernardino Rivadavia”; ArgentinaFil: Pol, Diego. Museo Paleontológico Egidio Feruglio; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Brusatte, Stephen L.. University of Edinburgh; Reino Unid

Genomics-assisted breeding in four major pulse crops of developing countries: present status and prospects

The global population is continuously increasing and is expected to reach nine billion by 2050. This huge population pressure will lead to severe shortage of food, natural resources and arable land. Such an alarming situation is most likely to arise in developing countries due to increase in the proportion of people suffering from protein and micronutrient malnutrition. Pulses being a primary and affordable source of proteins and minerals play a key role in alleviating the protein calorie malnutrition, micronutrient deficiencies and other undernourishment-related issues. Additionally, pulses are a vital source of livelihood generation for millions of resource-poor farmers practising agriculture in the semi-arid and sub-tropical regions. Limited success achieved through conventional breeding so far in most of the pulse crops will not be enough to feed the ever increasing population. In this context, genomics-assisted breeding (GAB) holds promise in enhancing the genetic gains. Though pulses have long been considered as orphan crops, recent advances in the area of pulse genomics are noteworthy, e.g. discovery of genome-wide genetic markers, high-throughput genotyping and sequencing platforms, high-density genetic linkage/QTL maps and, more importantly, the availability of whole-genome sequence. With genome sequence in hand, there is a great scope to apply genome-wide methods for trait mapping using association studies and to choose desirable genotypes via genomic selection. It is anticipated that GAB will speed up the progress of genetic improvement of pulses, leading to the rapid development of cultivars with higher yield, enhanced stress tolerance and wider adaptability

Location, Location, Location: A viewshed analysis of heiau spatial and temporal relationships in leeward Kohala, Hawai\u27i

Late pre-European contact Hawaiian society was agriculturally based, with visible religious structures acting to legitimise and reinforce elite control and management of subsistence and surplus production. The dynamic materialization of elite management of agricultural production has been documented in the leeward Kohala field system (LKFS) by analysing the spatial distribution of agricultural alignments, trails, and the division and realignment of traditional community-based land units (ahupua\u27a). Additional studies have documented the spatial expressions and significance of religious structures (heiau) in the area in relation to these land-units. In this analysis we build on these previous studies to investigate the inter-visibility of heiau. We document shifts in the construction of heiau with decreases in the number of structures through time and concomitant increases in size and total viewshed breadth. Newly constructed heiau were built to command large viewsheds while taking into account the location and views of pre-existing religious features. These changing patterns reflect ideological shifts and the materialization of production management instrumental in chiefly and religious control

McPhee et al 2018 Current Biology

Ledumahadi Mafube dataset

Anatomy of the dinosaur Pampadromaeus barberenai (Saurischia-Sauropodomorpha) from the Late Triassic Santa Maria Formation of southern Brazil.

Sauropodomorphs are the most abundant and diverse clade of Triassic dinosaurs, but the taxonomy of their earliest (Carnian) representatives is still poorly understood. One such taxon is Pampadromaeus barberenai, represented by a nearly complete disarticulated skeleton recovered from the upper part of the Santa Maria Formation of Rio Grande do Sul, Brazil. Here, the osteology of Pam. barberenai is fully described for the first time. Detailed comparisons with other Carnian sauropodomorphs reveal a unique anatomy, corroborating its status as a valid species. Potential autapomorphies of Pam. barberenai can be seen in the articulation of the sacral zygapophyses, the length of the pectoral epipodium, the shape of the distal articulation of the femur and the proximal articulation of metatarsal 1. A novel phylogenetic study shows that relationships among the Carnian sauropodomorphs are poorly constrained, possibly because they belong to a "zone of variability", where homoplasy abounds. Yet, there is some evidence that Pam. barberenai may nest within Saturnaliidae, along with Saturnalia tupiniquim and Chromogisaurus novasi, which represents the sister group to the larger sauropodomorphs, i.e. Bagualosauria

A second species of <i>Eucnemesaurus</i> Van Hoepen, 1920 (Dinosauria, Sauropodomorpha): new information on the diversity and evolution of the sauropodomorph fauna of South Africa's lower Elliot Formation (latest Triassic)

<div><p>ABSTRACT</p><p>The Late Triassic–Early Jurassic Elliot Formation of South Africa is one of the most important geological formations worldwide for understanding the early evolution of sauropodomorph dinosaurs. However, many of the taxa currently recognized as valid within its lower strata remain either poorly understood, vaguely diagnosed, or both. The recent discovery of an articulated partial skeleton of a single individual of the enigmatic lower Elliot genus <i>Eucnemesaurus</i> provides an important opportunity to expand our understanding of the anatomy and phylogeny of this poorly known taxon. A comprehensive investigation of the morphological relationships of this new specimen identified key features, pertaining primarily to the femoral shaft and distal tibia, which distinguish it from the only other previously named species of <i>Eucnemesaurus—E. fortis</i>. A new species, <i>E. entaxonis</i>, is erected within which to accommodate it. A cladistic analysis confirms the monophyly of <i>Eucnemesaurus</i>, as well as its continued inclusion within the low-diversity ‘Riojasauridae.’ Nonetheless, this result highlights continued uncertainties regarding the constituency of the <i>Riojasaurus</i> hypodigm. The relatively robust pedal architecture of <i>E. entaxonis</i> suggests an unexpectedly early experiment in a slower, subgraviportal form of locomotion within Late Triassic basal Massopoda, whereas the intriguing mosaic of plesiomorphic and derived characters evident in <i>E. entaxonis</i> raises questions regarding the hypothesized population dynamics of the basal-most sauropodomorph taxa of the lower Elliot Formation. This latter concern has particular bearing on newly observed inconsistencies in the prevailing hypodigms of other lower Elliot basal sauropodomorph taxa such as <i>Melanorosaurus</i>.</p><p>http://zoobank.org/urn:lsid:zoobank.org:pub:68A7F233-2424-469E-A008-442C4E04B02F</p><p>SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP</p></div