Snowball: strain aware gene assembly of metagenomes

Gregor I, Schönhuth A, McHardy AC. Snowball: strain aware gene assembly of metagenomes. Bioinformatics. 2016;32(17):i649-i657

Implications of the X-ray Variability for the Mass of MCG-6-30-15

The bright Seyfert 1 galaxy \mcg shows large variability on a variety of time scales. We study the \aproxlt 3 day time scale variability using a set of simultaneous archival observations that were obtained from \rxte and the {\it Advanced Satellite for Cosmology and Astrophysics} (\asca). The \rxte\ observations span nearly $10^6$ sec and indicate that the X-ray Fourier Power Spectral Density has an rms variability of 16%, is flat from approximately 10^{-6} - 10^{-5} Hz, and then steepens into a power law $\propto f^{-\alpha}$ with \alpha\aproxgt 1. A further steepening to $\alpha \approx 2$ occurs between 10^{-4}-10^{-3} Hz. The shape and rms amplitude are comparable to what has been observed in \ngc and \cyg, albeit with break frequencies that differ by a factor of 10^{-2} and 10^{4}, respectively. If the break frequencies are indicative of the central black hole mass, then this mass may be as low as $10^6 {\rm M}_\odot$. An upper limit of $\sim 2$ ks for the relative lag between the 0.5-2 keV \asca band compared to the 8-15 keV \rxte band was also found. Again by analogy with \ngc and \cyg, this limit is consistent with a relatively low central black hole mass.Comment: 5 pages, 3 figures, LaTeX, uses emulateapj.sty and apjfonts.sty, revised version, accepted for publication in ApJ Letter

Heating of the Intracluster Gas in the Triangulum Australis Cluster

ASCA and ROSAT X-ray data are used to obtain two-dimensional maps of the gas temperature, pressure and specific entropy in the Triangulum Australis cluster of galaxies. We find that this hot (T_e=10.3+-0.8 keV) system probably has a temperature peak (T_e>12 keV) at the cluster core, which approximately corresponds to the adiabatic relation. An underdense gas sector, found in the ROSAT cluster image eastward of the core, has a higher temperature than average at that radius. At this higher temperature, the gas pressure in this region is equal to that of the rest of the cluster at the same radius, but the specific entropy of this gas is significantly higher (although the temperature difference itself is only marginally significant). We speculate that the existence of this region of underdense high-entropy gas, as well as the adiabatic central temperature peak, indicate recent or ongoing heating of the intergalactic medium in this cluster. The most probable source of such heating is a subcluster merger, for which the hydrodynamic simulations predict a qualitatively similar temperature structure. We point out that entropy maps can provide a physically meaningful way of diagnosing merging clusters and comparing the predictions of merger simulations to the data.Comment: Text revised to give more technical details and clarify discussion. Accepted for ApJ Letters. Latex, 5 pages incl. figures, macros include

Dating COINS: Kinematic Ages for Compact Symmetric Objects

We present multi-epoch VLBA observations of Compact Symmetric Objects (CSOs) from the COINS sample (CSOs Observed In the Northern Sky). These observations allow us to make estimates of, or place limits on, the kinematic ages for those sources with well-identified hot spots. This study significantly increases the number of CSOs with well-determined ages or limits. The age distribution is found to be sharply peaked under 500 years, suggesting that many CSOs die young, or are episodic in nature, and very few survive to evolve into FR II sources like Cygnus A. Jet components are found to have higher velocities than hot spots which is consistent with their movement down cleared channels. We also report on the first detections of significant polarization in two CSOs, J0000+4054 (2.1%) and J1826+1831 (8.8%). In both cases the polarized emission is found in jet components on the stronger side of the center of activity.Comment: 34 pages including 7 figures, Accepted to ApJ on Dec 7, 200

Large Scale Fluctuations in the X-Ray Background

We present an attempt to measure the large angular scale fluctuations in the X-Ray Background (XRB) from the HEAO1-A2 data, expressed in terms of spherical harmonics. We model the harmonic coefficients assuming a power spectrum and an epoch-dependent bias parameter, and using a phenomenological scenario describing the evolution of the X-ray sources. From the few low-order multipoles detected above shot noise, we estimate the power-spectrum normalization on scales intermediate between those explored by local galaxy redshift surveys (~ 100 Mpc) and by the COBE Microwave Background measurements (~ 1000 Mpc). We find that the HEAO1 harmonics are consistent with present epoch rms fluctuations of the X-ray sources bx(0)sigma8 ~ 1-2 in 8 Mpc spheres. Therefore the observed fluctuations in the XRB are roughly as expected from interpolating between the local galaxy surveys and the COBE CMB experiment. We predict that an X-ray all-sky surface brightness survey resolving sources a factor of 10 fainter than HEAO1, may reveal fluctuations to significantly larger angular scales and therefore more strongly constrain the large scale structure of the Universe on scales of hundreds of Mpcs.Comment: 14 pages, 3 Postscript figures, uses aaspp4.sty and psfig. Revised following referee's report. Accepted for publication in Ap

Analysis of attitudes of Turkish citizens towards the effect of European Union membership on the economic, political, and cultural environment

Author's OriginalPrevious studies on Turkey’s possible accession to the European Union have mostly focused on the level of support for membership as expressed by Turkish citizens. The purpose of this paper is to shed some light on the specific expectations and perceptions of the Turks about the EU membership process, focusing on economic development, democratic progress, economic and political stability, and cultural influence. In both the focus group studies and the final survey, the authors targeted people who have some knowledge about the EU accession process and EU membership, namely, academics and business people.Aybar, C., Mergen, A., Perotti, V., & Reid, D. (2007). Analysis of Attitudes of Turkish Citizens towards the Effect of European Union Membership on the Economic, Political, and Cultural Environment. Turkish Studies, 8(3), 329-348. doi:10.1080/1468384070148908

Redshifts and Neutral Hydrogen Observations of Compact Symmetric Objects in the COINS Sample

Compact Symmetric Objects (CSOs) are young radio galaxies whose jet axes lie close to the plane of the sky, and whose appearance is therefore not dominated by relativistic beaming effects. The small linear sizes of CSOs make them valuable for studies of both the evolution of radio galaxies and testing unified schemes for active galactic nuclei (AGN). A parsec-scale region of gas surrounding the central engine is predicted by both accretion and obscuration scenarios. Working surfaces, or ``hot spots,'' and the radio jets of CSOs are close enough to the central engines that this circumnuclear gas can be seen in absorption. The CSOs Observed in the Northern Sky (COINS) sample is comprised of 52 CSO candidates identified in three VLBI surveys. Of these, 27 have now been confirmed as CSOs. Optical redshifts are available in the literature for 28 of the CSO candidates, and HI absorption has been detected toward four. We present new optical spectroscopic redshifts for three of the candidates and summarize the current status of optical identifications. We further report on the discovery of HI in absorption towards the CSO J1816+3457 and summarize the results of neutral hydrogen absorption studies of the sources in this sample.Comment: 12 pages, Accepted for publication in Ap

The swan song: the disappearance of the nucleus of NGC 4051 and the echo of its past glory

BeppoSAX observed the low-luminous Seyfert 1 Galaxy NGC4051 in a ultra-dim X-ray state. The 2-10 keV flux (1.26 x 10^{-12} erg/cm^2/s) was about 20 times fainter than its historical average value, and remained steady along the whole observation (~2.3 days). The observed flat spectrum (\Gamma ~ 0.8) and intense iron line (EW ~600 eV) are best explained assuming that the active nucleus has switched off, leaving only a residual reflection component visible.Comment: 5 pages, Latex, 3 Postscript figures, accepted for publication in MNRA

Near-infrared and X-ray obscuration to the nucleus of the Seyfert 2 galaxy NGC 3281

We present the results of a near-infrared and X-ray study of the Seyfert 2 galaxy NGC 3281. Emission from the Seyfert nucleus is detected in both regions of the electromagnetic spectrum, allowing us to infer both the equivalent line of sight hydrogen column density, N_H = 71.0(+11.3,-12.3)e26/m^2 and the extinction due to dust, A_V = 22+/-11 magnitudes (90% confidence intervals). We infer a ratio of N_H/A_V which is an order of magnitude larger than that determined along lines of sight in the Milky Way and discuss possible interpretations. We consider the most plausible explanation to be a dense cloud in the foreground of both the X-ray and infrared emitting regions which obscures the entire X-ray source but only a fraction of the much larger infrared source.Comment: 23 pages including 9 figure

X-ray Fluctuation Power Spectral Densities of Seyfert 1 Galaxies

By combining complementary monitoring observations spanning long, medium and short time scales, we have constructed power spectral densities (PSDs) of six Seyfert~1 galaxies. These PSDs span $\gtrsim$4 orders of magnitude in temporal frequency, sampling variations on time scales ranging from tens of minutes to over a year. In at least four cases, the PSD shows a "break," a significant departure from a power law, typically on time scales of order a few days. This is similar to the behavior of Galactic X-ray binaries (XRBs), lower mass compact systems with breaks on time scales of seconds. NGC 3783 shows tentative evidence for a doubly-broken power law, a feature that until now has only been seen in the (much better-defined) PSDs of low-state XRBs. It is also interesting that (when one previously-observed object is added to make a small sample of seven), an apparently significant correlation is seen between the break time scale $T$ and the putative black hole mass $M_{\rm BH}$, while none is seen between break time scale and luminosity. The data are consistent with the linear relation T = M_{\rm BH}/10^{6.5} \Msun; extrapolation over 6--7 orders of magnitude is in reasonable agreement with XRBs. All of this strengthens the case for a physical similarity between Seyfert~1s and XRBs.Comment: 27 pages, 13 figures. Accepted for publication in ApJ. Typo correcte