A dynastic elite in monumental Neolithic society

The nature and distribution of political power in Europe during the Neolithic era remains poorly understood. During this period, many societies began to invest heavily in building monuments, which suggests an increase in social organization. The scale and sophistication of megalithic architecture along the Atlantic seaboard, culminating in the great passage tomb complexes, is particularly impressive. Although co-operative ideology has often been emphasised as a driver of megalith construction, the human expenditure required to erect the largest monuments has led some researchers to emphasize hierarchy—of which the most extreme case is a small elite marshalling the labour of the masses. Here we present evidence that a social stratum of this type was established during the Neolithic period in Ireland. We sampled 44 whole genomes, among which we identify the adult son of a first-degree incestuous union from remains that were discovered within the most elaborate recess of the Newgrange passage tomb. Socially sanctioned matings of this nature are very rare, and are documented almost exclusively among politico-religious elites—specifically within polygynous and patrilineal royal families that are headed by god-kings. We identify relatives of this individual within two other major complexes of passage tombs 150 km to the west of Newgrange, as well as dietary differences and fine-scale haplotypic structure (which is unprecedented in resolution for a prehistoric population) between passage tomb samples and the larger dataset, which together imply hierarchy. This elite emerged against a backdrop of rapid maritime colonization that displaced a unique Mesolithic isolate population, although we also detected rare Irish hunter-gatherer introgression within the Neolithic population

A novel lineage of the Capra genus discovered in the Taurus Mountains of Turkey using ancient genomics

Direkli Cave, located in the Taurus Mountains of southern Turkey, was occupied by Late Epipaleolithic hunters-gatherers for the seasonal hunting and processing of game including large numbers of wild goats. We report genomic data from new and published Capra specimens from Direkli Cave and, supplemented with historic genomes from multiple Capra species, find a novel lineage best represented by a ~14,000 year old 2.59 X genome sequenced from specimen Direkli4. This newly discovered Capra lineage is a sister clade to the Caucasian tur species (Capra cylindricornis and Capra caucasica), both now limited to the Caucasus region. We identify genomic regions introgressed in domestic goats with high affinity to Direkli4, and find that West Eurasian domestic goats in the past, but not those today, appear enriched for Direkli4-specific alleles at a genome-wide level. This forgotten 'Taurasian tur' likely survived Late Pleistocene climatic change in a Taurus Mountain refuge and its genomic fate is unknown

Bioarchaeology aids the cultural understanding of six characters in search of their agency (Tarquinia, ninth–seventh century BC, central Italy)

Etruria contained one of the great early urban civilisations in the Italian peninsula during the first millennium BC, much studied from a cultural, humanities-based, perspective, but relatively little with scientific data, and rarely in combination. We have addressed the unusual location of twenty inhumations found in the sacred heart of the Etruscan city of Tarquinia, focusing on six of these as illustrative, contrasting with the typical contemporary cremations found in cemeteries on the edge of the city. The cultural evidence suggests that the six skeletons were also distinctive in their ritualization and memorialisation. Focusing on the six, as a representative sample, the scientific evidence of osteoarchaeology, isotopic compositions, and ancient DNA has established that these appear to show mobility, diversity and violence through an integrated bioarchaeological approach. The combination of multiple lines of evidence makes major strides towards a deeper understanding of the role of these extraordinary individuals in the life of the early city of Etruria

Ancient genomes illuminate Eastern Arabian population history and adaptation against malaria

The harsh climate of Arabia has posed challenges in generating ancient DNA from the region, hindering the direct examination of ancient genomes for understanding the demographic processes that shaped Arabian populations. In this study, we report whole-genome sequence data obtained from four Tylos-period individuals from Bahrain. Their genetic ancestry can be modeled as a mixture of sources from ancient Anatolia, Levant, and Iran/Caucasus, with variation between individuals suggesting population heterogeneity in Bahrain before the onset of Islam. We identify the G6PD Mediterranean mutation associated with malaria resistance in three out of four ancient Bahraini samples and estimate that it rose in frequency in Eastern Arabia from 5 to 6 kya onward, around the time agriculture appeared in the region. Our study characterizes the genetic composition of ancient Arabians, shedding light on the population history of Bahrain and demonstrating the feasibility of studies of ancient DNA in the region

A Genome Scan for Positive Selection in Thoroughbred Horses

Thoroughbred horses have been selected for exceptional racing performance resulting in system-wide structural and functional adaptations contributing to elite athletic phenotypes. Because selection has been recent and intense in a closed population that stems from a small number of founder animals Thoroughbreds represent a unique population within which to identify genomic contributions to exercise-related traits. Employing a population genetics-based hitchhiking mapping approach we performed a genome scan using 394 autosomal and X chromosome microsatellite loci and identified positively selected loci in the extreme tail-ends of the empirical distributions for (1) deviations from expected heterozygosity (Ewens-Watterson test) in Thoroughbred (n = 112) and (2) global differentiation among four geographically diverse horse populations (FST). We found positively selected genomic regions in Thoroughbred enriched for phosphoinositide-mediated signalling (3.2-fold enrichment; P<0.01), insulin receptor signalling (5.0-fold enrichment; P<0.01) and lipid transport (2.2-fold enrichment; P<0.05) genes. We found a significant overrepresentation of sarcoglycan complex (11.1-fold enrichment; P<0.05) and focal adhesion pathway (1.9-fold enrichment; P<0.01) genes highlighting the role for muscle strength and integrity in the Thoroughbred athletic phenotype. We report for the first time candidate athletic-performance genes within regions targeted by selection in Thoroughbred horses that are principally responsible for fatty acid oxidation, increased insulin sensitivity and muscle strength: ACSS1 (acyl-CoA synthetase short-chain family member 1), ACTA1 (actin, alpha 1, skeletal muscle), ACTN2 (actinin, alpha 2), ADHFE1 (alcohol dehydrogenase, iron containing, 1), MTFR1 (mitochondrial fission regulator 1), PDK4 (pyruvate dehydrogenase kinase, isozyme 4) and TNC (tenascin C). Understanding the genetic basis for exercise adaptation will be crucial for the identification of genes within the complex molecular networks underlying obesity and its consequential pathologies, such as type 2 diabetes. Therefore, we propose Thoroughbred as a novel in vivo large animal model for understanding molecular protection against metabolic disease

Ancient goat genomes reveal mosaic domestication in the Fertile Crescent

Current genetic data are equivocal as to whether goat domestication occurred multiple times or was a singular process. We generated genomic data from 83 ancient goats (51 with genome-wide coverage) from Paleolithic to Medieval contexts throughout the Near East. Our findings demonstrate that multiple divergent ancient wild goat sources were domesticated in a dispersed process that resulted in genetically and geographically distinct Neolithic goat populations, echoing contemporaneous human divergence across the region. These early goat populations contributed differently to modern goats in Asia, Africa, and Europe. We also detect early selection for pigmentation, stature, reproduction, milking, and response to dietary change, providing 8000-year-old evidence for human agency in molding genome variation within a partner species

Factors affecting the duration of fights in fallow deer (Dama dama) during the rut

More than 500 male-male interactions were recorded in a population of 560 fallow deer in order to evaluate the importance of fight duration as an index of risk and benefit. Fight duration was affected by rank, presence or absence of parallel walk in the fight sequence and, to a lesser extent, presence of females. Higher-ranking bucks fought for longer than low-ranking ones, probably because parallel walks were more common during fights among high-ranking than low-ranking bucks. The high level of competition in this population may explain why fights were shorter in the presence of does, which can be considered a short-term resource: fighting for too long could mean a lost mating opportunity

The fighting technique of male fallow deer (Dama dama): an analysis of agonistic interactions during the rut

A population of 560 individually recognizable European fallow deer (Dama dama) was studied in Phoenix Park, Dublin, Ireland, during the rut in order to examine buck \uaeghting technique in relation to age and rank. The percent usage and association among behavioural elements used were analysed in 162 fights and 82 sparrings. During fight sequences, high-ranking bucks tend to use a higher percentage of low-risk behaviours (all behaviours which do not involve antler contact), especially when they interact with lowerranking deer. Fights between combatants of the same rank class show a higher use of high-risk behaviours (characterized by antler contact), and cluster analysis of a preceding\ub1following matrix revealed that highrisk behaviours are closely associated with each other in these interactions. During sparrings, the low intensity of the interaction allows the deer to test their ability and strength using a higher percentage of behaviours which are generally considered high-risk, without risking injury. The data suggest that the percent usage and the sequences of behavioural elements performed in agonistic interactions are affected by deer rank, probably in relation to the different risks and bene\uaets that different hierarchical positions can offer

Feeding and social behavior of fallow deer (Dama dama L.) under intensive pasture confinement

A population of 110 adult fallow deer kept in an enclosure under very intensive conditions (31.4 deer/ha) was observed for 12 h/d (from 0800 to 2000) for 17 d during the birth season in order to study social and feeding behavior under intensive management. Observations were carried out by a scan sampling technique. The feeding activity of all the deer that were not hidden behind trees or other obstacles in the enclosure (60 to 90% of all deer) and the composition and position of all groups were recorded every 20 min by videocamera. Adult females ate more pasture than adult males, whereas adult males ate more hay and meal than females (P < .001). Feeding activity was concentrated in the morning and in the evening, but it was higher for bucks in the morning (when supplementary feed was distributed) than in the midday and in the evening (P < .001). The area where hay and meal were supplied was more frequently attended in morning by small groups of males. Group size was affected by the time of day (P < .05), being larger in the evening (13.6 \ub1 1.2 in the evening vs 9.8 \ub1 1.0 in the morning and 11.9 \ub1 0.9 in the afternoon), when groups of females with fawns and mixed-sex groups (including at least one male) gathered into the pasture areas for grazing. Our study suggests that even under very intensive conditions fallow deer may tend to maintain the sexual segregation typical of this species during the birth season, but mixed-sex groups are still the most common type of social aggregation. This situation was particularly evident in the areas and at the time in which feeding activity was higher and might indicate that feeding requirements are more important than social needs when the space available is limited