Digital Preservation and Access of Natural Resources Documents

Digitization and preservation of natural resource documents were reviewed and the current status of digitization presented for a North American university. It is important to present the status of the digitation process for natural resources and to advocate for increased collections of digital material for ease of reference and exchange of information. Digital collections need to include both published documents and ancillary material for research projects and data for future use and interpretation. The methods in this paper can be applied to other natural resource collections increasing their use and distribution. The process of decision making for documents and their preservation and inclusion in ScholarWorks is presented as a part of the Forest Sciences Commons as a subset of the Life Sciences Commons of the Digital Commons Open Network launched and maintained by bepress. Digitization has increased the roles and skillsets needed for librarians and from libraries. This creates new challenges and opportunities for the library as publisher and as an advocate for open access. Digital curation melds together digitization and knowledge management and enhances community engagement. Digitization of collections are reviewed and natural resource documentation presented for faculty publications, Research Projects and Centers, eBooks, Journals, Galleries and electronic Theses and Dissertations (ETDs). Recommendations are made to increase the digital curation of the collection by encouraging community participation and use. Digital archives are important to natural resource professionals as society-ready natural resource graduates need to deal effectively with complex ecological, economic and social issues of current natural resources management. Natural resource research for the future needs to ensure that professionals have a greater breath of knowledge as they interpret and apply new knowledge, understanding, and technology to complex, transdisciplinary social and biological issues and challenges

Use of Altmetrics to Analyze ScholarWorks in Natural Resource Management

Digital preservation of library materials has increased the need for methods to access the documents and contents maintained in digital archives. The use of altmetrics to quantify the impact of scholarly works, including PlumX, is increasing readership by listing articles in reference services. The outreach from the digital repository ScholarWorks at Stephen F. Austin State University (SFASU) highlights the impact within the natural resources community from Digital Commons, Forest Sciences Commons; and from the Natural Products Chemistry and Pharmacognosy Commons. The use of PlumX altmetrics was examined to evaluate usage, impact, and digital audience downloads for the Arthur Temple College of Forestry and Agriculture (ATCOFA) at SFASU

Masses of Neutron Stars in High-Mass X-ray Binaries with Optical Astrometry

Determining the type of matter that is inside a neutron star (NS) has been a long-standing goal of astrophysics. Despite this, most of the NS equations of state (EOS) that predict maximum masses in the range 1.4-2.8 solar masses are still viable. Most of the precise NS mass measurements that have been made to date show values close to 1.4 solar masses, but a reliable measurement of an over-massive NS would constrain the EOS possibilities. Here, we investigate how optical astrometry at the microarcsecond level can be used to map out the orbits of High-Mass X-ray Binaries (HMXBs), leading to tight constraints on NS masses. While previous studies by Unwin and co-workers and Tomsick and co-workers discuss the fact that the future Space Interferometry Mission should be capable of making such measurements, the current work describes detailed simulations for 6 HMXB systems, including predicted constraints on all orbital parameters. We find that the direct NS masses can be measured to an accuracy of 2.5% (1-sigma) in the best case (X Per), to 6.5% for Vela X-1, and to 10% for two other HMXBs.Comment: 8 pages, Accepted by Ap

Buoyancy Instabilities in a Weakly Collisional Intracluster Medium

The intracluster medium of galaxy clusters is a weakly collisional, high-beta plasma in which the transport of heat and momentum occurs primarily along magnetic-field lines. Anisotropic heat conduction allows convective instabilities to be driven by temperature gradients of either sign, the magnetothermal instability (MTI) in the outskirts of non-isothermal clusters and the heat-flux buoyancy-driven instability (HBI) in their cooling cores. We employ the Athena MHD code to investigate the nonlinear evolution of these instabilities, self-consistently including the effects of anisotropic viscosity (i.e. Braginskii pressure anisotropy), anisotropic conduction, and radiative cooling. We highlight the importance of the microscale instabilities that inevitably accompany and regulate the pressure anisotropies generated by the HBI and MTI. We find that, in all but the innermost regions of cool-core clusters, anisotropic viscosity significantly impairs the ability of the HBI to reorient magnetic-field lines orthogonal to the temperature gradient. Thus, while radio-mode feedback appears necessary in the central few tens of kpc, conduction may be capable of offsetting radiative losses throughout most of a cool core over a significant fraction of the Hubble time. Magnetically-aligned cold filaments are then able to form by local thermal instability. Viscous dissipation during the formation of a cold filament produces accompanying hot filaments, which can be searched for in deep Chandra observations of nearby cool-core clusters. In the case of the MTI, anisotropic viscosity maintains the coherence of magnetic-field lines over larger distances than in the inviscid case, providing a natural lower limit for the scale on which the field can fluctuate freely. In the nonlinear state, the magnetic field exhibits a folded structure in which the field-line curvature and field strength are anti-correlated.Comment: 20 pages, 20 figures, submitted to ApJ; Abstract abridge

Autonomic Nervous System Function Following Prenatal Opiate Exposure

In utero exposure to opiates may affect autonomic functioning of the fetus and newborn. We investigated heart rate variability (HRV) as a measure of autonomic stability in prenatal opiate-exposed neonates (n = 14) and in control term infants (n = 10). Electrocardiographic data during both non-nutritive and nutritive sucking were evaluated for RR intervals, heart rate (HR), standard deviation of the consecutive RR intervals (SDRR), standard deviation of the differences of consecutive RR intervals (SDDRR), and the power spectral densities in low and high frequency bands. In controls, mean HR increased significantly, 143-161 per min (p = 0.002), with a trend toward a decrease in RR intervals from non-nutritive to nutritive sucking; these measures did not change significantly among exposed infants. Compared to controls, exposed infants demonstrated significantly greater HRV or greater mean SDRR and SDDRR during non-nutritive period (p \u3c 0.01), greater mean SDDRR during nutritive sucking (p = 0.02), and higher powers in the low and high frequency bands during nutritive feedings. Our findings suggest that prenatal opiate exposure may be associated with changes in autonomic nervous system (ANS) functioning involving both sympathetic and parasympathetic branches. Future studies are needed to examine the effects of prenatal opiate exposure on ANS function

PCORnet Antibiotics and Childhood Growth Study: Process for Cohort Creation and Cohort Description

OBJECTIVES: The National Patient-Centered Clinical Research Network (PCORnet) supports observational and clinical research using health care data. The PCORnet Antibiotics and Childhood Growth Study is one of PCORnet’s inaugural observational studies. We sought to describe the processes used to integrate and analyze data from children across 35 participating institutions, the cohort characteristics, and prevalence of antibiotic use. METHODS:We included children in the cohort if they had at least one same-day height and weight measured in each of 3 age periods: 1) before 12 months, 2) 12 to 30 months, and 3) after 24 months. We distributed statistical queries that each institution ran on its local version of the PCORnet Common Data Model, with aggregate data returned for analysis. We defined overweight or obesity as age- and sex-specific body mass index ≥85th percentile, obesity ≥95th percentile, and severe obesity ≥120% of the 95th percentile. RESULTS: A total of 681,739 children met the cohort inclusion criteria, and participants were racially/ethnically diverse (24.9% black, 17.5% Hispanic). Before 24 months of age, 55.2% of children received at least one antibiotic prescription; 21.3% received a single antibiotic prescription; 14.3% received 4 or more; and 33.3% received a broad-spectrum antibiotic. Overweight and obesity prevalence was 27.6% at age 4 to(n = 362,044) and 36.2% at 9 to(n = 58,344). CONCLUSIONS: The PCORnet Antibiotics and Childhood Growth Study is a large national longitudinal observational study in a diverse population that will examine the relationship between early antibiotic use and subsequent growth patterns in children

Risk algorithm using serial biomarker measurements doubles the number of screen-detected cancers compared with a single-threshold rule in the United Kingdom collaborative trial of ovarian cancer screening

PURPOSE: Cancer screening strategies have commonly adopted single-biomarker thresholds to identify abnormality. We investigated the impact of serial biomarker change interpreted through a risk algorithm on cancer detection rates. PATIENTS AND METHODS: In the United Kingdom Collaborative Trial of Ovarian Cancer Screening, 46,237 women, age 50 years or older underwent incidence screening by using the multimodal strategy (MMS) in which annual serum cancer antigen 125 (CA-125) was interpreted with the risk of ovarian cancer algorithm (ROCA). Women were triaged by the ROCA: normal risk, returned to annual screening; intermediate risk, repeat CA-125; and elevated risk, repeat CA-125 and transvaginal ultrasound. Women with persistently increased risk were clinically evaluated. All participants were followed through national cancer and/or death registries. Performance characteristics of a single-threshold rule and the ROCA were compared by using receiver operating characteristic curves. RESULTS: After 296,911 women-years of annual incidence screening, 640 women underwent surgery. Of those, 133 had primary invasive epithelial ovarian or tubal cancers (iEOCs). In all, 22 interval iEOCs occurred within 1 year of screening, of which one was detected by ROCA but was managed conservatively after clinical assessment. The sensitivity and specificity of MMS for detection of iEOCs were 85.8% (95% CI, 79.3% to 90.9%) and 99.8% (95% CI, 99.8% to 99.8%), respectively, with 4.8 surgeries per iEOC. ROCA alone detected 87.1% (135 of 155) of the iEOCs. Using fixed CA-125 cutoffs at the last annual screen of more than 35, more than 30, and more than 22 U/mL would have identified 41.3% (64 of 155), 48.4% (75 of 155), and 66.5% (103 of 155), respectively. The area under the curve for ROCA (0.915) was significantly (P = .0027) higher than that for a single-threshold rule (0.869). CONCLUSION: Screening by using ROCA doubled the number of screen-detected iEOCs compared with a fixed cutoff. In the context of cancer screening, reliance on predefined single-threshold rules may result in biomarkers of value being discarded