Effect of management interventions on helminth levels and body condition of working donkeys in South Africa

Please read the abstract in the section 00front of this documentThesis (DPhil)--University of Pretoria, 2000.Veterinary Tropical Diseasesunrestricte

First record of the pantropical blue tick Rhipicephalus microplus in Namibia

The invasive pantropical blue tick, Rhipicephalus microplus, has recently been collected from cattle in Namibia. A cross-sectional study aimed at recording the geographic distribution of Rhipicephalus decoloratus and establishing whether R. microplus is present in Namibia was conducted towards the end of summer (March–April) 2013. Ticks were collected from cattle on 18 privately owned farms across a large geographical scale. Ticks were collected from three to five cattle per farm and species belonging to the genera Hyalomma and Rhipicephalus were recovered. Rhipicephalus decoloratus was present on all farms and R. microplus was recorded on four of the farms. The small numbers of R. microplus compared to R. decoloratus collected in the mixed infestations, suggests that the introduction events were recent.Stellenbosch University and the National Research Foundation (IFR2011032500004)http://link.springer.com/journal/10493hb2013ab201

Documenting the microbiome diversity and distribution in selected fleas from South Africa with an emphasis on the cat flea, Ctenocephalides f. felis.

The factors that influence parasite associated bacterial microbial diversity and the geographic distributions of bacteria are not fully understood. In an effort to gain a deeper understanding of the relationship between the bacterial diversity of Ctenocephalides fleas and host species and the external environment, we conducted a metagenetic analysis of 107 flea samples collected from 8 distinct sampling sites in South Africa. Pooled DNA samples mostly comprising of 2 or 3 individuals sampled from the same host, and belonging to the same genetic cluster, were sequenced using the Ion PGM™ Hi-Q™ Kit and the Ion 316™ Chip v2. Differences were detected in the microbiome compositions between Ctenocephalides felis, Ctenocephalides canis and Ctenocephalides connatus. Although based on a small sample, C. connatus occurring on wildlife harboured a higher bacterial richness when compared to C. felis on domestic animals. Intraspecific differences in the microbial OTU diversity were detected within C. f. felis that occurred on domestic cats and dogs. Different genetic lineages of C. f. felis were similar in microbial compositions but some differences exist in the presence or absence of rare bacteria. Rickettsia and Bartonella OTU's identified in South African cat fleas differ from those identified in the USA and Australia. Intraspecific microbial compositions also differ across geographic sampling sites. Generalized dissimilarity modelling showed that temperature and humidity are potentially important environmental factors explaining the pattern obtained

Effects of Tectonics and Large Scale Climatic Changes On the Evolutionary History of \u3ci\u3eHyalomma\u3c/i\u3e ticks

Hyalomma Koch, 1844 are ixodid ticks that infest mammals, birds and reptiles, to which 27 recognized species occur across the Afrotropical, Palearctic and Oriental regions. Despite their medical and veterinary importance, the evolutionary history of the group is enigmatic. To investigate various taxonomic hypotheses based on morphology, and also some of the mechanisms involved in the diversification of the genus, we sequenced and analysed data derived from two mtDNA fragments, three nuclear DNA genes and 47 morphological characters. Bayesian and Parsimony analyses based on the combined data (2242 characters for 84 taxa) provided maximum resolution and strongly supported the monophyly of Hyalomma and the subgenus Euhyalomma Filippova, 1984 (including H. punt Hoogstraal, Kaiser and Pedersen, 1969). A predicted close evolutionary association was found between morphologically similar H. dromedarii Koch, 1844, H. somalicum Tonelli Rondelli, 1935, H. impeltatum Schulze and Schlottke, 1929 and H. punt, and together they form a sister lineage to H. asiaticum Schulze and Schlottke, 1929, H. schulzei Olenev, 1931 and H. scupense Schulze, 1919. Congruent with morphological suggestions, H. anatolicum Koch, 1844, H. excavatum Koch, 1844 and H. lusitanicum Koch, 1844 form a clade and so also H. glabrum Delpy, 1949, H. marginatum Koch, 1844, H. turanicum Pomerantzev, 1946 and H. rufipes Koch, 1844. Wide scale continental sampling revealed cryptic divergences within African H. truncatum Koch, 1844 and H. rufipes and suggested that the taxonomy of these lineages is in need of a revision. The most basal lineages in Hyalomma represent taxa currently confined to Eurasia and molecular clock estimates suggest that members of the genus started to diverge approximately 36.25 million years ago (Mya). The early diversification event coincides well with the collision of the Indian and Eurasian Plates, an event that was also characterized by large scale faunal turnover in the region. Using S-Diva, we also propose that the closure of the Tethyan seaway allowed for the genus to first enter Africa approximately 17.73 Mya. In concert, our data supports the notion that tectonic events and large scale global changes in the environment contributed significantly to produce the rich species diversity currently found in the genus Hyalomma

Ectoparasites associated with the Bushveld gerbil (Gerbilliscus leucogaster) and the role of the host and habitat in shaping ectoparasite diversity and infestations

Rodents are known hosts for various ectoparasite taxa such as fleas, lice, ticks and mites. South Africa is recognized for its animal diversity, yet little is published about the parasite diversity associated with wild rodent species. By focusing on a wildlife-human/domestic animal interface, the study aims to record ectoparasite diversity and levels of infestations of the Bushveld gerbil, Gerbilliscus leucogaster, and to establish the relationship between ectoparasite infestation parameters and host- and habitat factors. Rodents (n = 127) were trapped in 2 habitat types (natural and agricultural) during 2014–2020. More than 6500 individuals of 32 epifaunistic species represented by 21 genera and belonging to 5 taxonomic groups (fleas, sucking lice, ticks, mesostigmatan mites and trombiculid mites) were collected. Mesostigmatan mites and lice were the most abundant and fleas and mesostigmatan mites the most prevalent groups. Flea and mesostigmatan mite numbers and mesostigmatan mite species richness was significantly higher on reproductively active male than female rodents. Only ticks were significantly associated with habitat type, with significantly higher tick numbers and more tick species on rodents in the natural compared to the agricultural habitat. We conclude that the level of infestation by ectoparasites closely associated with the host (fleas and mites) was affected by host-associated factors, while infestation by ectoparasite that spend most of their life in the external environment (ticks) was affected by habitat type

Mitochondrial genome sequence comparisons indicate that the elephant louse Haematomyzus elephantis (Piaget, 1869) contains cryptic species

DATA AVAILABILITY STATEMENT : Annotated mitochondrial genome sequences of the African savanna elephant lice produced in the current study are available in GenBank (accession numbers OQ834926-OQ834934; https://www.ncbi.nlm.nih.gov/genbank/); raw Illumina sequence data are available in the NCBI Sequence Read Archive (SRA) database (BioProject accession number PRJNA1021748). Genomic sequence reads of an Asian elephant louse (SRR5308122) and transcriptomic sequence reads of an Asian elephant louse (SRR2051491) are available in the SRA database (https://www.ncbi.nlm.nih.gov/sra).SUPPLEMENTARY MATERIAL S1. PCR primers used to amplify the mitochondrial genes or minichromosomes of the African savanna elephant louse.SUPPLEMENTARY MATERIAL S2. Mitochondrial cox1 gene sequence divergence between closely related congeneric species of parasitic lice.SUPPLEMENTARY MATERIAL S3. The fully sequenced S2-R-nad4L-M-G-nad3 mitochondrial minichromosome of African savanna elephant louse (RS460). trnG, trnM, trnR and trnS2 are tRNA genes for amino acids glycine, methionine, arginine and serine respectively. nad3 and nad4L are for NADH dehydrogenase subunits 3 and 4L. SKnad4LFO2 and SKnad4LRO2 are the primer pair that amplifies the entire S2-R-nad4L-M-G-nad3 minichromosome.SUPPLEMENTARY MATERIAL S4. Mitochondrial gene sequence divergence between African (RS460) and Asian elephant lice (B1567, SRR5308122.SUPPLEMENTARY MATERIAL S5. Mitochondrial gene sequence divergence among Asian elephant lice (B1567, SRR5308122 and SRR2051491).SUPPLEMENTARY MATERIAL S6. Mitochondrial cox1 gene and genome sequence divergence between African savanna elephant (Loxodonta africana, GenBank accession number NC_000934) and Asian elephant (Elephas maximus, NC_005129).The parvorder Rhynchopthirina contains three currently recognised species of lice that parasitize elephants (both African savanna elephant Loxodonta africana and Asian elephant Elephas maximus), desert warthogs (Phacochoerus aethiopicus) and Red River hogs (Potamochoerus porcus), respectively. The Asian elephant lice and the African savanna elephant lice are currently treated as the same species, Haematomyzus elephantis (Piaget, 1869), based on morphology despite the fact that their hosts diverged 8.4 million years ago. In the current study, we sequenced 23 mitochondrial (mt) genes of African savanna elephant lice collected in South Africa and analysed the sequence divergence between African savanna elephant lice and previously sequenced Asian elephant lice. Sequence comparisons revealed >23% divergence for the 23 mt genes as a whole and ~17% divergence for cox1 gene between African savanna and Asian elephant lice, which were far higher than the divergence expected within a species. Furthermore, the mt gene sequence divergences between these lice are 3.76–4.6 times higher than that between their hosts, the African savanna and Asian elephants, which are expected for the co-divergence and co-evolution between lice and their elephant hosts. We conclude that (1) H. elephantis (Piaget, 1869) contains cryptic species and (2) African savanna and Asian elephant lice are different species genetically that may have co-diverged and co-evolved with their hosts.University of the Sunshine Coast.Open access publishing facilitated by University of the Sunshine Coast, as part of the Wiley - University of the Sunshine Coast agreement via the Council of Australian University Librarians.http://wileyonlinelibrary.com/journal/mvehj2024Centre for Veterinary Wildlife StudiesVeterinary Tropical DiseasesSDG-03:Good heatlh and well-bein

Latitudinal distributions of the species richness, phylogenetic diversity, and functional diversity of fleas and their small mammalian hosts in four geographic quadrants

We studied latitudinal patterns in the species richness (SR), the phylogenetic diversity (PD), and the functional diversity (FD) of fleas and their mammalian hosts. We asked whether these patterns in either fleas, hosts, or both 1) conform to a classical latitudinal gradient; 2) vary geographically; and 3) differ between fleas and hosts. We also asked whether the patterns of PD and FD follow those of SR. We collected data on the latitudinal distribution of 1022 flea and 900 mammal species from literature sources and calculated the SR, PD, and FD of both groups in 1° latitude bands. Then, we used broken-stick regression models to analyse separately the latitudinal variation of 1) each diversity facet and 2) fleas and hosts in each geographic quadrant. The classical latitudinal gradient pattern was not found in either fleas or hosts across any facet of diversity or geographic quadrant, except for the PD of fleas in the southeastern quadrant and the FD of hosts in the southwestern quadrant. Latitudinal patterns of the SR, PD and FD of fleas and hosts differed substantially between geographic quadrants. Furthermore, the latitudinal distributions of flea and host SR were similar in three of four quadrants (except the northeastern quadrant), whereas the latitudinal distributions of flea and host PD were similar in the southwestern quadrant only. No similarity in flea versus host FD was revealed. The latitudinal patterns of flea and host PD and FD mostly did not follow those of their SR. We conclude that latitudinal gradients of species richness and phylogenetic and functional diversity appeared not to be universal phenomena. Instead, the latitudinal distributions of these diversity facets represent an interplay of ecological (current and past) and historical processes. For parasites, the processes acting on hosts add another layer of complexity underlying their latitudinal diversity patterns.Fil: Krasnov, Boris R.. Ben Gurion University of the Negev; IsraelFil: Grabovsky, Vasily I.. Ben Gurion University of the Negev; IsraelFil: Khokhlova, Irina S.. Ben Gurion University of the Negev; IsraelFil: Lopez Berrizbeitia, Maria Fernanda. Fundación Miguel Lillo; Argentina. Universidad Nacional de Tucumán. Facultad de Ciencias Naturales e Instituto Miguel Lillo. Programa de Investigación de Biodiversidad Argentina; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán; ArgentinaFil: Matthee, Sonja. No especifíca;Fil: Roll, Uri. Ben Gurion University of the Negev; IsraelFil: Sánchez, Juliana Patricia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro de Investigaciones y Transferencia del Noroeste de la Provincia de Buenos Aires. Universidad Nacional del Noroeste de la Provincia de Buenos Aires. Centro de Investigaciones y Transferencia del Noroeste de la Provincia de Buenos Aires; ArgentinaFil: Shenbrot, Georgy I.. Ben Gurion University of the Negev; IsraelFil: van der Mescht, Luther. No especifíca

Multi-site interaction turnover in flea–mammal networks from four continents: Application of zeta diversity concept and multi-site generalised dissimilarity modelling

We studied patterns of changes in host–flea interactions measured as total turnover (TT) which can be partitioned into components, namely species turnover (ST), interaction rewiring (RW), and mixed turnover (MX) in networks from Europe, Asia, Africa, and South America, applying a multi-site interaction turnover metric. We also searched for environmental drivers of TT and its components. We asked whether (a) different components contribute differently to TT in rare versus common interactions (in terms of frequency of interaction occurrence); (b) relative roles of turnover components for rare and common interactions differ between continents; and (c) the environmental drivers of interaction turnover differ between turnover components, rare and common interactions, and/or continental networks. Between-network dissimilarity of interactions increased with an increase in the number of compared networks. Pure ST contributed the most to the turnover of rare interactions, whereas the turnover of common interactions was predominated by MX. The effects of environmental factors, interaction richness, and spatial distance on TT and its components differed between continental networks, turnover components, and rare versus common interactions. Climate and vegetation exerted the strongest effects on (a) ST for rare (except Asia) and, to a lesser degree, common (South America) interactions, (b) RW for both rare and common interactions in Europe/Asia, and (c) MX for both rare and common interactions (except Africa). Interaction richness and spatial distance mainly influenced ST. We conclude that the patterns of interaction turnover and its components were geographically invariant and did not depend on the identity of the interactors, whereas the drivers of the turnover differed between continental networks because of species-specific responses to the environment.Fil: Krasnov, Boris R.. Ben Gurion University of the Negev; IsraelFil: Khokhlova, Irina S.. Ben Gurion University of the Negev; IsraelFil: Kiefer, Mathias S.. Ludwig Maximilians Universitat; AlemaniaFil: Kiefer, Daniel. Ludwig Maximilians Universitat; AlemaniaFil: Lareschi, Marcela. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Centro de Estudios Parasitológicos y de Vectores. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. Centro de Estudios Parasitológicos y de Vectores; ArgentinaFil: Matthee, Sonja. Stellenbosch University; SudáfricaFil: Sánchez, Juliana Patricia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro de Investigaciones y Transferencia del Noroeste de la Provincia de Buenos Aires. Universidad Nacional del Noroeste de la Provincia de Buenos Aires. Centro de Investigaciones y Transferencia del Noroeste de la Provincia de Buenos Aires; ArgentinaFil: Shenbrot, Georgy I.. Ben Gurion University of the Negev; IsraelFil: Stanko, Michal. Slovak Academy of Sciences. Institute of Botany; EslovaquiaFil: van der Mescht, Luther. Stellenbosch University; Sudáfric

A new species of Schoutedenichia Jadin & Vercammen-Grandjean, 1954 from Madagascar and a re-description of S. dutoiti (Radford, 1948) from South Africa (Acariformes: Trombiculidae)

A new chigger mite species, Schoutedenichia microcebi n. sp. is described from the grey mouse lemur Microcebus murinus (J.F. Miller) from Madagascar. The new species is closely related to S. dutoiti (Radford, 1948), a species described from a single specimen collected on a rodent in South Africa. Examination of the holotype and new material on S. dutoiti from South Africa enabled us to re-describe this species and provide new data on its hosts and geographical distribution