Protocol for Future Amino Acid Analyses of Samples Returned by the Stardust Mission

We have demonstrated that LC-ToF-MS coupled with UV fluorescence detection is a powerful tool for the detection of amino acids in meteorite extracts. Using this new analytical technique we were able to identify the extraterrestrial amino acid AIB extracted from fifteen 20 micron sized Murchison meteorite grains. We found that the amino acid contamination levels in Stardust aerogels was much lower than the levels observed in the Murchison meteorite. In addition, the alpha-dialkyl amino acids AIB and isovaline which are the most abundant amino acids in Murchison were not detected in the aerogel above blank levels. We are currently integrating LIF detection capability to our existing nanoflow LC-ToF-MS for enhanced sensitivity required for the analysis of amino acids in Stardust samples

Infrared, UV/VIS and Raman Spectroscopy of Comet Wild-2 Samples Returned by the Stardust Mission

Results from the preliminary examination of Stardust samples obtained using various spectroscopic methods will be presented

Nature and evolution of the dominant carbonaceous matter in interplanetary dust particles: effects of irradiation and identification with a type of amorphous carbon

Aims.Interplanetary dust particle (IDP) matter probably evolved under irradiation in the interstellar medium (ISM) and the solar nebula. Currently IDPs are exposed to irradiation in the Solar System. Here the effects of UV and proton processing on IDP matter are studied experimentally. The structure and chemical composition of the bulk of carbon matter in IDPs is characterized. Methods: .Several IDPs were further irradiated in the laboratory using ultraviolet (UV) photons and protons in order to study the effects of such processing. By means of infrared and Raman spectroscopy, IDPs were also compared to different materials that serve as analogs of carbon grains in the dense and diffuse ISM. Results: .The carbonaceous fraction of IDPs is dehydrogenated by exposure to hard UV photons or 1 MeV protons. On the other hand, proton irradiation at lower energies (20 keV) leads to an efficient hydrogenation of the carbonaceous IDP matter. The dominant type of carbon in IDPs, observed with Raman and infrared spectroscopy, is found to be either a form of amorphous carbon (a-C) or hydrogenated amorphous carbon (a-C:H), depending on the IDP, consisting of aromatic units with an average domain size of 1.35 nm (5-6 rings in diameter), linked by aliphatic chains. Conclusions: .The D- and 15N-enrichments associated to an aliphatic component in some IDPs are probably the result of chemical reactions at cold temperatures. It is proposed that the amorphous carbon in IDPs was formed by energetic processing (UV photons and cosmic rays) of icy grains, maybe during the dense cloud stage, and more likely on the surface of the disk during the T Tauri phase of our Sun. This would explain the isotopic anomalies and morphology of IDPs. Partial annealing, 300-400°C, is required to convert an organic residue from ice photoprocessing into the amorphous carbon with low heteroatom content found in IDPs. Such annealing might have occurred as the particles approached the Sun and/or during atmospheric entry heating

High Precision Oxygen Three Isotope Analysis of Wild-2 Particles and Anhydrous Chondritic Interplanetary Dust Particles

One of the most important discoveries from comet Wild-2 samples was observation of crystalline silicate particles that resemble chondrules and CAIs in carbonaceous chondrites. Previous oxygen isotope analyses of crystalline silicate terminal particles showed heterogeneous oxygen isotope ratios with delta(sup 18)O to approx. delta(sup 17)O down to -50% in the CAI-like particle Inti, a relict olivine grain in Gozen-sama, and an olivine particle. However, many Wild-2 particles as well as ferromagnesian silicates in anhydrous interplanetary dust particles (IDPs) showed Delta(sup 17)O values that cluster around -2%. In carbonaceous chondrites, chondrules seem to show two major isotope reservoirs with Delta(sup 17)O values at -5% and -2%. It was suggested that the Delta(sup 17)O = -2% is the common oxygen isotope reservoir for carbonaceous chondrite chondrules and cometary dust, from the outer asteroid belt to the Kuiper belt region. However, a larger dataset with high precision isotope analyses (+/-1-2%) is still needed to resolve the similarities or distinctions among Wild-2 particles, IDPs and chondrules in meteorites. We have made signifi-cant efforts to establish routine analyses of small particles (< or =10micronsm) at 1-2% precision using IMS-1280 at WiscSIMS laboratory. Here we report new results of high precision oxygen isotope analyses of Wild-2 particles and anhydrous chondritic IDPs, and discuss the relationship between the cometary dust and carbonaceous chondrite chondrules

Overview of the results of the organics PET Study of the cometary samples returned from comet Wild 2 by the Stardust mission

This presenation will provide an overview of the efforts and results produced by the Organics Preliminary Examination Team during their studies of the samples returned from comet Wild 2 by the Stardust spacecraft

Modelling the strategies for age specific vaccination scheduling during influenza pandemic outbreaks

Finding optimal policies to reduce the morbidity and mortality of the ongoing pandemic is a top public health priority. Using a compartmental model with age structure and vaccination status, we examined the effect of age specific scheduling of vaccination during a pandemic influenza outbreak, when there is a race between the vaccination campaign and the dynamics of the pandemic. Our results agree with some recent studies on that age specificity is paramount to vaccination planning. However, little is known about the effectiveness of such control measures when they are applied during the outbreak. Comparing five possible strategies, we found that age specific scheduling can have a huge impact on the outcome of the epidemic. For the best scheme, the attack rates were up to 10% lower than for other strategies. We demonstrate the importance of early start of the vaccination campaign, since ten days delay may increase the attack rate by up to 6%. Taking into account the delay between developing immunity and vaccination is a key factor in evaluating the impact of vaccination campaigns. We provide a general framework which will be useful for the next pandemic waves as well

Evolution of scaling emergence in large-scale spatial epidemic spreading

Background: Zipf's law and Heaps' law are two representatives of the scaling concepts, which play a significant role in the study of complexity science. The coexistence of the Zipf's law and the Heaps' law motivates different understandings on the dependence between these two scalings, which is still hardly been clarified. Methodology/Principal Findings: In this article, we observe an evolution process of the scalings: the Zipf's law and the Heaps' law are naturally shaped to coexist at the initial time, while the crossover comes with the emergence of their inconsistency at the larger time before reaching a stable state, where the Heaps' law still exists with the disappearance of strict Zipf's law. Such findings are illustrated with a scenario of large-scale spatial epidemic spreading, and the empirical results of pandemic disease support a universal analysis of the relation between the two laws regardless of the biological details of disease. Employing the United States(U.S.) domestic air transportation and demographic data to construct a metapopulation model for simulating the pandemic spread at the U.S. country level, we uncover that the broad heterogeneity of the infrastructure plays a key role in the evolution of scaling emergence. Conclusions/Significance: The analyses of large-scale spatial epidemic spreading help understand the temporal evolution of scalings, indicating the coexistence of the Zipf's law and the Heaps' law depends on the collective dynamics of epidemic processes, and the heterogeneity of epidemic spread indicates the significance of performing targeted containment strategies at the early time of a pandemic disease.Comment: 24pages, 7figures, accepted by PLoS ON

Trends in parameterization, economics and host behaviour in influenza pandemic modelling: a review and reporting protocol.

BACKGROUND: The volume of influenza pandemic modelling studies has increased dramatically in the last decade. Many models incorporate now sophisticated parameterization and validation techniques, economic analyses and the behaviour of individuals. METHODS: We reviewed trends in these aspects in models for influenza pandemic preparedness that aimed to generate policy insights for epidemic management and were published from 2000 to September 2011, i.e. before and after the 2009 pandemic. RESULTS: We find that many influenza pandemics models rely on parameters from previous modelling studies, models are rarely validated using observed data and are seldom applied to low-income countries. Mechanisms for international data sharing would be necessary to facilitate a wider adoption of model validation. The variety of modelling decisions makes it difficult to compare and evaluate models systematically. CONCLUSIONS: We propose a model Characteristics, Construction, Parameterization and Validation aspects protocol (CCPV protocol) to contribute to the systematisation of the reporting of models with an emphasis on the incorporation of economic aspects and host behaviour. Model reporting, as already exists in many other fields of modelling, would increase confidence in model results, and transparency in their assessment and comparison

The role of DNA microarrays in Toxoplasma gondii research, the causative agent of ocular toxoplasmosis

Ocular toxoplasmosis, which is caused by the protozoan parasite Toxoplasma gondii, is the leading cause of retinochoroiditis. Toxoplasma is an obligate intracellular pathogen that replicates within a parasitophorous vacuole. Infections are initiated by digestion of parasites deposited in cat feces or in undercooked meat. Parasites then disseminate to target tissues that include the retina where they then develop into long-lived asymptomatic tissue cysts. Occasionally, cysts reactivate and growth of newly emerged parasites must be controlled by the host’s immune system or disease will occur. The mechanisms by which Toxoplasma grows within its host cell, encysts, and interacts with the host’s immune system are important questions. Here, we will discuss how the use of DNA microarrays in transcriptional profiling, genotyping, and epigenetic experiments has impacted our understanding of these processes. Finally, we will discuss how these advances relate to ocular toxoplasmosis and how future research on ocular toxoplasmosis can benefit from DNA microarrays

Organics Captured from Comet Wild 2 by the Stardust Spacecraft

Organics found in Comet Wild 2 samples show a heterogeneous and unequilibrated distribution in abundance and composition. Some organics are similar, but not identical, to those in interplanetary dust particles (IDPs) and carbonaceous meteorites. A class of aromatic-poor organic material is also present. The organics are rich in O and N compared to meteoritic organics. Aromatic compounds are present, but the samples tend to be relatively poorer in aromatics than meteorites and IDPs. D and {sup 15}N suggest that some organics have an interstellar/protostellar heritage. While the variable extent of modification of these materials by impact capture is not yet fully constrained, a remarkably diverse suite of organic compounds is present and identifiable within the returned samples. Comets are small bodies that accreted in the outer Solar System during its formation (1) and thus may consist of preserved samples of the ''starting materials'' from which the Solar System was made. Organic materials are expected to be present in cometary samples (2) and may include molecules made and/or modified in stellar outflows, the interstellar medium, and the protosolar nebula, as well as by parent body processing within the comet. The presence of organic compounds in comets and their ejecta is of astrobiological interest since their delivery to the early Earth may have played an important role in the origin of life on Earth (3). An overview of the Stardust Mission and the collection and recovery of Wild 2 samples is provided elsewhere (4,5). We describe the results obtained from the returned samples by the Stardust Organics Preliminary Examination Team (PET). Samples were studied using a wide range of analytical techniques, including two-step laser desorption laser ionization mass spectrometry (L{sub 2}MS), Liquid Chromatography with UV Fluorescence Detection and Time of Flight Mass Spectrometry (LC-FD/TOF-MS), Scanning Transmission X-ray Microscopy (STXM), X-ray Absorption Near Edge Spectroscopy (XANES), infrared and Raman spectroscopy, Ion Chromatography with conductivity detection (IC), Secondary Ion Mass Spectrometry (SIMS), and Time-of-Flight Secondary Ion Mass Spectrometry (TOF-SIMS) (6). These techniques provide a wealth of information about the chemical nature and relative abundance of the organics in the samples. Our results are compared to organic materials found in primitive meteorites and interplanetary dust particles (IDPs) collected in the stratosphere, well as to astronomical and spacecraft observations of comets. Despite some uncertainties associated with the presence of contaminants and alteration of the samples during the capture process, considerable information about the nature of the organics in the samples can be determined