Multiancestry analysis of the HLA locus in Alzheimer’s and Parkinson’s diseases uncovers a shared adaptive immune response mediated by HLA-DRB1*04 subtypes

Across multiancestry groups, we analyzed Human Leukocyte Antigen (HLA) associations in over 176,000 individuals with Parkinson’s disease (PD) and Alzheimer’s disease (AD) versus controls. We demonstrate that the two diseases share the same protective association at the HLA locus. HLA-specific fine-mapping showed that hierarchical protective effects of HLA-DRB1*04 subtypes best accounted for the association, strongest with HLA-DRB1*04:04 and HLA-DRB1*04:07, and intermediary with HLA-DRB1*04:01 and HLA-DRB1*04:03. The same signal was associated with decreased neurofibrillary tangles in postmortem brains and was associated with reduced tau levels in cerebrospinal fluid and to a lower extent with increased Aβ42. Protective HLA-DRB1*04 subtypes strongly bound the aggregation-prone tau PHF6 sequence, however only when acetylated at a lysine (K311), a common posttranslational modification central to tau aggregation. An HLA-DRB1*04-mediated adaptive immune response decreases PD and AD risks, potentially by acting against tau, offering the possibility of therapeutic avenues

Modeling, kinetic, and equilibrium characterization of paraquat adsorption onto polyurethane foam using the ion-pairing technique

We studied the adsorption of paraquat onto polyurethane foam (PUF) when it was in a medium containing sodium dodecylsulfate (SDS). The adsorption efficiency was dependent on the concentration of SDS in solution, because the formation of an ion-associate between the cationic paraquat and the dodecylsulfate anion was found to be a fundamental step in the process. A computational study was carried out to identify the possible structure of the ion-associate in aqueous medium. The obtained data demonstrated that the structure is probably formed from four units of dodecylsulfate bonded to one paraquat moiety. The results showed that 94% of the paraquat present in 45 mL of a solution containing 3.90 × 10^−5 mol L^−1 could be retained by 300 mg of PUF, resulting in the removal of 2.20 mg of paraquat. The experimental data were reasonably adjusted to the Freundlich isotherm and to the pseudo-second-order kinetic model. Also, the application of Morris–Weber and Reichenberg models indicated that both film-diffusion and intraparticle-diffusion processes were active during the control of the adsorption kinetics

Natural polyprenylated benzophenone: keto-enol tautomerism from density functional calculations and the AIM theory

The quantum theory of atoms in molecules (QTAIM) and density functional theory (DFT) calculations were employed to investigate the structure and tautomeric equilibrium of epiclusianone, a polyisoprenylated benzophenone with interesting biological activities. Two different exchange-correlation functionals were employed, namely ωB97x-D and M06-2x, including implicit solvent models (benzene and DMSO). Our results for the thermodynamic properties show that the isomer in which the H atom is bonded to the oxygen away from the benzene ring is the most stable tautomer form of the epiclusianone, thus confirming previous charge density analysis from X-ray diffraction data (Martins et al. J Braz Chem Soc 18(8):1515–1523, 2007)

Adsorption of the herbicides diquat and difenzoquat on polyurethane foam: kinetic, equilibrium and computational studies

This work reports a study about the adsorption of the herbicides diquat and difenzoquat from aqueous medium employing polyurethane foam (PUF) as the adsorbent and sodium dodecylsulfate (SDS) as the counter ion. The adsorption efficiency was shown to be dependent on the concentration of SDS in solution, since the formation of an ion-associate between cationic herbicides (diquat and difenzoquat) and anionic dodecylsulfate is a fundamental step of the process. A computational study was carried out to identify the possible structure of the ion-associates that are formed in solution. They are probably formed by three units of dodecylsulfate bound to one unit of diquat, and two units of dodecylsulfate bound to one unit of difenzoquat. The results obtained also showed that 95% of both herbicides present in 45 mL of a solution containing 5.5 mg L^−1 could be retained by 300 mg of PUF. The experimental data were well adjusted to the Freundlich isotherm (r^2 ≥ 0.95) and to the pseudo-second-order kinetic equation. Also, the application of Morris-Weber and Reichenberg equations indicated that an intraparticle diffusion process is active in the control of adsorption kinetics

Adsorption of Bitumen Model Compounds on Kaolinite in Liquid and Supercritical Carbon Dioxide Solvents: A Study by Periodic Density Functional Theory and Molecular Theory of Solvation

The geometry of phenanthridine, benzothiophene, tetralin, and naphthalene representative of the heterocyclic, naphthenic, and aromatic components of bitumen adsorbed on kaolinite is optimized using density functional theory and periodic boundary conditions in gas phase. These bitumen model compounds preferentially adsorb on the aluminum hydroxide surface of kaolinite with energy decreasing in the order phenanthridine > naphthalene > tetralin ∼ benzothiophene. The adsorption of phenanthridine is strengthened by hydrogen bonding between the pyridinic N atom and an axial hydroxyl group of kaolinite, while the rest of the molecules adsorb through van der Waals interactions. The mechanism of solvation in CO₂ and the effect of liquid and supercritical CO₂ on the adsorption thermodynamics are studied using the three-dimensional reference interaction site model theory with the closure approximation of Kovalenko and Hirata (3D-RISM-KH) molecular theory of solvation at 293–333 K and 10–30 MPa. The CO₂ solvent interacts with the aluminum hydroxide surface of kaolinite by hydrogen bonding, with the pyridinic N atom of phenanthridine by electrostatic interactions, and with the rest of the bitumen model compounds by hydrophobic interactions, as inferred from the 3D site density distribution functions of CO₂. The molecule–kaolinite potentials of mean force in CO₂ show that the adsorption of naphthalene and tetralin on kaolinite is substantially weakened as the pressure is increased and the temperature is decreased. Benzothiophene adsorption is the least sensitive to CO₂ temperature and pressure changes. In liquid CO₂ at 30 MPa and 293 K, the hydrocarbon molecules are weakly adsorbed and can be desorbed by CO₂, while the heterocycles would remain adsorbed, suggesting an approach for extraction of deasphalted bitumen from oil sands. While the most favorable thermodynamic conditions for desorption are in liquid CO₂, the kinetic barrier for desorption is the most sensitive to small changes in the temperature and pressure in supercritical CO₂, indicating that supercritical conditions are important for desorption rate control. These results suggest that the investigated bitumen components can be selectively desorbed from kaolinite by controlling the temperature and pressure of the CO₂ solvent and agree with experimental reports on heavy oil recovery. These insights are valuable for the development of improved techniques for extraction of bitumen from oil sands and deasphalting of bitumen using liquid and supercritical CO₂

Synthesis of Rubrolide Analogues as New Inhibitors of the Photosynthetic Electron Transport Chain

Many natural products have been used as a model for the development of new drugs and agrochemicals. Following this strategy 11 rubrolide analogues, bearing electron-withdrawing and -donating groups at both benzene rings, were prepared starting from commercially available mucobromic acid. The ability of all compounds to inhibit the photosynthetic electron transport chain in the chloroplast was investigated. The rubrolide analogues were effective in interfering with the light-driven ferricyanide reduction by isolated chloroplasts. The IC₅₀ values of the most active derivatives are in fact only 1 order of magnitude higher than those of commercial herbicides sharing the same mode of action, such as Diuron (0.27 μM). QSAR studies indicate that the most efficient compounds are those having higher ability to accept electrons, either by a reduction process or by an electrophilic reaction mechanism. The results obtained suggest that the rubrolide analogues represent promising candidates for the development of new active principles targeting photosynthesis to be used as herbicides

Computational and Experimental Investigations of the Role of Water and Alcohols in the Desorption of Heterocyclic Aromatic Compounds from Kaolinite in Toluene

Nonaqueous extraction is an attractive alternative to the currently employed warm water process for extraction of bitumen from oil sands, as it could use less energy and water. Hydroxylated cosolvents, such as alcohols, that compete for the adsorptive clay surfaces and help release bitumen components could help improve bitumen recovery. The water naturally present in oil sand also affects oil–mineral interactions. Electronic structure methods and the statistical-mechanical 3D-RISM-KH molecular theory of solvation as well as experimental desorption measurements are employed to study the effects of water and aliphatic alcohol cosolvents in toluene solvent on the desorption of fused pyridinic heterocycles (ArN) from kaolinite. The geometries of phenanthridine and acridine (representative of pyridinic heterocycles of petroleum asphaltenes) adsorbed on the kaolinite clay surface are optimized in periodic boundary conditions using density functional theory. The 3D-RISM-KH method is employed to calculate the solvation free energy and potential of mean force for adsorption of the heterocycles on kaolinite in pure and alcohol-containing toluene. The potentials of mean force show that the adsorption of the fused pyridines on kaolinite is stronger in pure toluene than in toluene mixed with aliphatic alcohol. Analysis of the mechanism of desorption of phenanthridine and acridine from kaolinite in toluene containing alcohol reveals that the alcohol stabilizes both the pyridinic moiety and kaolinite platelet by hydrogen bonding, thus disrupting the ArN···HO–Al­(kaolinite) hydrogen bond. A mechanism for retention of toluene on kaolinite is also highlighted. Experimental studies of the desorption of fused pyridines from an ArN–kaolinite aggregate show that in water-saturated toluene the rate of desorption of the phenanthridine from kaolinite is twice as high as that in dry toluene. The experimental and computational results show that water and aliphatic alcohols in toluene help desorb pyridinic heterocycles from kaolinite, a clay mineral abundant in the oil sands. The presented insights are valuable for understanding the molecule-clay interactions in solution and relevant to improving the nonaqueous extraction of bitumen from oil sand