83 research outputs found
A Multi-Modal Latent-Features based Service Recommendation System for the Social Internet of Things
The Social Internet of Things (SIoT), is revolutionizing how we interact with
our everyday lives. By adding the social dimension to connecting devices, the
SIoT has the potential to drastically change the way we interact with smart
devices. This connected infrastructure allows for unprecedented levels of
convenience, automation, and access to information, allowing us to do more with
less effort. However, this revolutionary new technology also brings an eager
need for service recommendation systems. As the SIoT grows in scope and
complexity, it becomes increasingly important for businesses and individuals,
and SIoT objects alike to have reliable sources for products, services, and
information that are tailored to their specific needs. Few works have been
proposed to provide service recommendations for SIoT environments. However,
these efforts have been confined to only focusing on modeling user-item
interactions using contextual information, devices' SIoT relationships, and
correlation social groups but these schemes do not account for latent semantic
item-item structures underlying the sparse multi-modal contents in SIoT
environment. In this paper, we propose a latent-based SIoT recommendation
system that learns item-item structures and aggregates multiple modalities to
obtain latent item graphs which are then used in graph convolutions to inject
high-order affinities into item representations. Experiments showed that the
proposed recommendation system outperformed state-of-the-art SIoT
recommendation methods and validated its efficacy at mining latent
relationships from multi-modal features
Comparison of live microalgae and Spray-dried algae powder effects on growth, digestive and antioxidant capacity of juvenile pearl oyster <em>Pinctada maxima</em>
The pearl production through the pearl oyster *Pinctada maxima's* culture has developed slowly over the past decades due to over-fishing of wild populations and mass mortality at juvenile stages. Indoor farming is an alternative mode for *P. maxima* juvenile cultivation to improve survival rates. In pursuit of optimizing healthy management under the indoor farming mode, the objective of this investigation was to compare the growth performance, digestion, and antioxidant capacity of juveniles fed with different microalgae-based diets (live *Isochrysis zhanjiangensis,* *Platymonas subcordiformis*, *Chaetoceros muelleri*; and spray-dried *I. zhanjiangensis*, *P. subcordiformis*, *C. muelleri* powder). The juvenile survival rates fed with spray-dried microalgae powder (except *C. muelleri* powder) were not significantly different from those fed on live microalgae. However, the growth performance of juveniles fed with spray-dried microalgae powder could have been better than the live one. The digestive enzymatic activities were consistent with growth performance, and diets affected the antioxidant capacity. The spray-dried *I. zhanjiangensis* powder can serve as a substitute for live microalga in *P. maxima* juvenile indoor farming and is recommended under controlled conditions. The findings from this study would provide essential data to improve health management for *P. maxima* juveniles in indoor farming conditions
Extinction risk of Chinese angiosperms varies between woody and herbaceous species
Aim: Understanding how species' traits and environmental contexts relate to extinction risk is a critical priority for ecology and conservation biology. This study aims to identify and explore factors related to extinction risk between herbaceous and woody angiosperms to facilitate more effective conservation and management strategies and understand the interactions between environmental threats and species' traits. Location: China. Taxon: Angiosperms. Methods: We obtained a large dataset including five traits, six extrinsic variables, and 796,118 occurrence records for 14,888 Chinese angiosperms. We assessed the phylogenetic signal and used phylogenetic generalized least squares regressions to explore relationships between extinction risk, plant traits, and extrinsic variables in woody and herbaceous angiosperms. We also used phylogenetic path analysis to evaluate causal relationships among traits, climate variables, and extinction risk of different growth forms. Results: The phylogenetic signal of extinction risk differed among woody and herbaceous species. Angiosperm extinction risk was mainly affected by growth form, altitude, mean annual temperature, normalized difference vegetation index, and precipitation change from 1901 to 2020. Woody species' extinction risk was strongly affected by height and precipitation, whereas extinction risk for herbaceous species was mainly affected by mean annual temperature rather than plant traits. Main conclusions: Woody species were more likely to have higher extinction risks than herbaceous species under climate change and extinction threat levels varied with both plant traits and extrinsic variables. The relationships we uncovered may help identify and protect threatened plant species and the ecosystems that rely on them
Systematic benchmarking of nanopore Q20+ kit in SARS-CoV-2 whole genome sequencing
Whole genome sequencing provides rapid insight into key information about the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), such as virus typing and key mutation site, and this information is important for precise prevention, control and tracing of coronavirus disease 2019 (COVID-19) outbreak in conjunction with the epidemiological information of the case. Nanopore sequencing is widely used around the world for its short sample-to-result time, simple experimental operation and long sequencing reads. However, because nanopore sequencing is a relatively new sequencing technology, many researchers still have doubts about its accuracy. The combination of the newly launched nanopore sequencing Q20+ kit (LSK112) and flow cell R10.4 is a qualitative improvement over the accuracy of the previous kits. In this study, we firstly used LSK112 kit with flow cell R10.4 to sequence the SARS-CoV-2 whole genome, and summarized the sequencing results of the combination of LSK112 kit and flow cell R10.4 for the 1200bp amplicons of SARS-CoV-2. We found that the proportion of sequences with an accuracy of more than 99% reached 30.1%, and the average sequence accuracy reached 98.34%, while the results of the original combination of LSK109 kit and flow cell R9.4.1 were 0.61% and 96.52%, respectively. The mutation site analysis showed that it was completely consistent with the final consensus sequence of next generation sequencing (NGS). The results showed that the combination of LSK112 kit and flow cell R10.4 allowed rapid whole-genome sequencing of SARS-CoV-2 without the need for verification of NGS
Diverse genetic mechanisms underlie worldwide convergent rice feralization
Background: Worldwide feralization of crop species into agricultural weeds threatens global food security. Weedy rice is a feral form of rice that infests paddies worldwide and aggressively outcompetes cultivated varieties. Despite increasing attention in recent years, a comprehensive understanding of the origins of weedy crop relatives and how a universal feralization process acts at the genomic and molecular level to allow the rapid adaptation to weediness are still yet to be explored. Results: We use whole-genome sequencing to examine the origin and adaptation of 524 global weedy rice samples representing all major regions of rice cultivation. Weed populations have evolved multiple times from cultivated rice, and a strikingly high proportion of contemporary Asian weed strains can be traced to a few Green Revolution cultivars that were widely grown in the late twentieth century. Latin American weedy rice stands out in having originated through extensive hybridization. Selection scans indicate that most genomic regions underlying weedy adaptations do not overlap with domestication targets of selection, suggesting that feralization occurs largely through changes at loci unrelated to domestication. Conclusions: This is the first investigation to provide detailed genomic characterizations of weedy rice on a global scale, and the results reveal diverse genetic mechanisms underlying worldwide convergent rice feralization
Genome-wide selection footprints and deleterious variations in young Asian allotetraploid rapeseed
Brassica napus (AACC, 2n=38) is an important oilseed crop grown worldwide. However, little is known about the population evolution of this species, the genomic difference between its major genetic groups, such as European and Asian rapeseed, and the impacts of historical large-scale introgression events on this young tetraploid. In this study, we reported the de novo assembly of the genome sequences of an Asian rapeseed (B. napus), Ningyou 7 and its four progenitors and compared these genomes with other available genomic data from diverse European and Asian cultivars. Our results showed that Asian rapeseed originally derived from European rapeseed but subsequently significantly diverged, with rapid genome differentiation after hybridization and intensive local selective breeding. The first historical introgression of B. rapa dramatically broadened the allelic pool but decreased the deleterious variations of Asian rapeseed. The second historical introgression of the double-low traits of European rapeseed (canola) has reshaped Asian rapeseed into two groups (double-low and double-high), accompanied by an increase in genetic load in the double-low group. This study demonstrates distinctive genomic footprints and deleterious SNP (Single Nucleotide Polymorphism) variants for local adaptation by recent intra- and interspecies introgression events and provides novel insights for understanding the rapid genome evolution of a young allopolyploid cro
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