A systematic review of rodent pest research in Afro-Malagasy small-holder farming systems : are we asking the right questions

Rodent pests are especially problematic in terms of agriculture and public health since they can inflict considerable economic damage associated with their abundance, diversity, generalist feeding habits and high reproductive rates. To quantify rodent pest impacts and identify trends in rodent pest research impacting on small-holder agriculture in the Afro- Malagasy region we did a systematic review of research outputs from 1910 to 2015, by developing an a priori defined set of criteria to allow for replication of the review process. We followed the Preferred Reporting Items for Systematic Reviews and Meta-Analyses guidelines. We reviewed 162 publications, and while rodent pest research was spatially distributed across Africa (32 countries, including Madagascar), there was a disparity in number of studies per country with research biased towards four countries (Tanzania [25%], Nigeria [9%], Ethiopia [9%], Kenya [8%]) accounting for 51% of all rodent pest research in the Afro- Malagasy region. There was a disparity in the research themes addressed by Tanzanian publications compared to publications from the rest of the Afro-Malagasy region where research in Tanzania had a much more applied focus (50%) compared to a more basic research approach (92%) in the rest of the Afro-Malagasy region. We found that pest rodents have a significant negative effect on the Afro-Malagasy small-holder farming communities. Crop losses varied between cropping stages, storage and crops and the highest losses occurred during early cropping stages (46% median loss during seedling stage) and the mature stage (15% median loss). There was a scarcity of studies investigating the effectiveness of various management actions on rodent pest damage and population abundance. Our analysis highlights that there are inadequate empirical studies focused on developing sustainable control methods for rodent pests and rodent pests in the Africa-Malagasy context is generally ignored as a research topic.S1 Table. PRISMA checklist.S2 Table. List of rodent genera detected in rodent pest research in African agricultural systems from 1960±2015.S3 Table. List of different crops and cropping system as impacted by rodent pests in African agriculture (1960±2015).S1 List. Complete list of all publications used in the review±Publications in bold did not have full texts available at time of review.S2 List. Web of Science TM search history±.S1 Web of ScienceTM saved search.A European Union 9th European Development Fund grant from the African Caribbean and Pacific Science and Technology Programme (FED/2013/330-223), a grant from the United Kingdom's Department for International Development (AgriTT/894), a grant from the Sasol Agriculture Trust (South Africa), and International Foundation for Science (SE)-D/4984-2 to LHS.http://www.plosone.orgam2017Animal and Wildlife Science

A Mammal Survey of the Lower Usuthu Basin, Swaziland

The Lower Usuthu River Basin is set in the lowveld of Swaziland. The predominant vegetation types are mixed broadleaf woodland in the western lowveld and Acacia savanna in the eastern lowveld. The mammalian fauna of the Lower Usuthu Basin has been poorly documented. The study set out to survey mammals of the Lower Usuthu Basin using appropriate sampling techniques. A total of 45 species of mammals were recorded, or presumed to occur, in the study area, of which 10 species are of special conservation status both within Swaziland and in the southern african region. On Swazi Nation Land, species diversity and population sizes of mammals, especially the antelopes, were very low. Large-scale reduction of habitat may affect the conservation status of many mammals in the Lower Usuthu Basin. UNISWA Research Journal of Agriculture, Science and Technology Vol. 4 (1) 2000: pp 55-6

Small mammals of a West African hotspot, the Ziama-Wonegizi-Wologizi transfrontier forest landscape

The Upper Guinea rainforest zone in West Africa is considered a biodiversity hotspot and contains important habitats for threatened and endemic mammals, yet this region remains poorly known particularly for small mammals. The aim of this study was to survey small mammals in a Liberian and Guinean cross-border conservation area, the Ziama-Wonegizi-Wologizi landscape. We recorded a total of 52 small mammal species, including 26 bats, 15 rodents, 10 shrews, one otter-shrew, of which one rodent species was new to science (Colomys sp. nov.). We also documented the first country records of the bats Chaerephon aloysiisabaudiae, Pseudoromicia brunnea and Pipistrellus inexspectatus from Guinea, and the shrews Crocidura douceti and Crocidura grandiceps from Liberia. Furthermore, we recorded the recently described bat Nycticeinops happoldorum from Wologizi and Ziama, and we documented the presence of Micropotamogale lamottei at Wologizi, which represents the fourth known locality for this globally threatened species. Finally, the forests of Wologizi and Ziama support numerous threatened species. The results of our survey demonstrate the importance of this region for small mammals and support the creation of a transboundary protected area that will encompass the entire forest landscape.The USAID West Africa Biodiversity and Climate Change Program (USAID WA BiCC).http://www.degruyter.com/view/j/mamm2021-12-08am2021Mammal Research InstituteZoology and Entomolog

Influence of sugarcane plantations on the population dynamics and community structure of small mammals in a savanna-agricultural landscape

Conversion of native habitats into agricultural monocultures is a major cause of biodiversity loss favouring a small number of generalist species. Rodents can cause significant declines in crop yield, hence understanding the factors affecting their population dynamics is of importance to the agricultural sector. Sugarcane plantations in African savannas harbour a low diversity of small mammals, with a single genus (Mastomys spp.) often dominating the community. Our study investigated the factors that shape the composition of the small mammal community and the life-history traits of the dominant species in a savanna-sugarcane landscape mosaic. We surveyed small mammals at eight sites, six in sugarcane and two in neighbouring savannas at five-week intervals over the course of a year. Sugarcane and native savanna sites were categorised into vegetation height classes. We captured a total of 845 individual small mammals belonging to eight species across all sites. Species diversity was higher in the savanna than in sugarcane fields. Although the composition of the community overlapped in the two habitats, it was most similar between tall sugarcane and savanna, than between sites that had recently planted (emerging or short) sugarcane and either tall sugarcane or savanna. Furthermore, population densities of the dominant species (Mastomys natalensis) were significantly higher in sugarcane than in native savanna. Additionally, the interactions between habitat and season influenced survival and body condition of M. natalensis; apparent survival decreased in savanna and body condition improved in sugarcane during the wet season. Furthermore, the survival of M. natalensis was also significantly reduced in sugarcane fields that had been burnt prior to harvesting. However, there was no significant difference in the extent of breeding between the two habitats. This study provides novel insight into the mechanisms that allow for the persistence of high densities of rodent pest species.http://www.elsevier.com/locate/geccoam2020Mammal Research InstituteZoology and Entomolog

Influence of sugarcane growth stages on bird diversity and community structure in an agricultural-savanna environment

Agricultural intensification is a threat to terrestrial ecosystems around the world. Agricultural areas, especially monocultures, create homogenous landscapes for wildlife. However, certain crops, such as sugarcane, are harvested in phases, creating a mosaic of fields in different stages of growth. We investigated changes in avian communities across four different sugarcane growth stages: emerging, short, medium and tall sugarcane, as well as control sites that represented native savanna habitat in northeast Eswatini prior to conversion to agriculture. In total, we sampled nine sites in sugarcane fields (at different growth stages) and three in native savanna. We conducted bird counts at 5-week intervals along 200m line transects over both the breeding and non-breeding seasons. We recorded a total of 124 bird species belonging to 58 families. Bird species richness and diversity were higher in savannas compared to any stages of growth in sugarcane. In contrast, functional beta diversity and uniqueness were higher in sugarcane than in savanna. Community composition was also different between the two land-uses. While there was overlap in bird species composition between different sugarcane growth stages, there was high beta diversity and high turnover between sites, indicative of the high temporal and spatial variability in bird communities in sugarcane fields. We demonstrated that the spatial and temporal variability created by the different growth stages of sugarcane promotes the occurrence of species with different traits, which may contribute to ecosystem functioning and promote the conservation of bird species as sugarcane fields can provide resource complementation for species with different needs.http://www.cell.com/heliyonam2022Mammal Research InstituteZoology and Entomolog

bi4africa dataset - open source

The bii4africa dataset is presented in a multi-spreadsheet .ods file. The raw data spreadsheet (‘Scores_Raw’) includes 31,313 individual expert estimates of the impact of a sub-Saharan African land use on a species response group of terrestrial vertebrates or vascular plants. Estimates are reported as intactness scores - the remaining proportion of an ‘intact’ reference (pre-industrial or contemporary wilderness area) population of a species response group in a land use, on a scale from 0 (no individuals remain) through 0.5 (half the individuals remain), to 1 (same as the reference population) and, in limited cases, to 2 (two or more times the reference population). For species that thrive in human-modified landscapes, scores could be greater than 1 but not exceeding 2 to avoid extremely large scores biasing aggregation exercises. Expert comments are included alongside respective estimates

bii4africa dataset

The bii4africa dataset is presented in a multi-spreadsheet .xlsx file. The raw data spreadsheet (‘Scores_Raw’) includes 31,313 individual expert estimates of the impact of a sub-Saharan African land use on a species response group of terrestrial vertebrates or vascular plants. Estimates are reported as intactness scores - the remaining proportion of an ‘intact’ reference (pre-industrial or contemporary wilderness area) population of a species response group in a land use, on a scale from 0 (no individuals remain) through 0.5 (half the individuals remain), to 1 (same as the reference population) and, in limited cases, to 2 (two or more times the reference population). For species that thrive in human-modified landscapes, scores could be greater than 1 but not exceeding 2 to avoid extremely large scores biasing aggregation exercises. Expert comments are included alongside respective estimates