Structural subnetwork evolution across the life-span: rich-club, feeder, seeder

The impact of developmental and aging processes on brain connectivity and the connectome has been widely studied. Network theoretical measures and certain topological principles are computed from the entire brain, however there is a need to separate and understand the underlying subnetworks which contribute towards these observed holistic connectomic alterations. One organizational principle is the rich-club - a core subnetwork of brain regions that are strongly connected, forming a high-cost, high-capacity backbone that is critical for effective communication in the network. Investigations primarily focus on its alterations with disease and age. Here, we present a systematic analysis of not only the rich-club, but also other subnetworks derived from this backbone - namely feeder and seeder subnetworks. Our analysis is applied to structural connectomes in a normal cohort from a large, publicly available lifespan study. We demonstrate changes in rich-club membership with age alongside a shift in importance from 'peripheral' seeder to feeder subnetworks. Our results show a refinement within the rich-club structure (increase in transitivity and betweenness centrality), as well as increased efficiency in the feeder subnetwork and decreased measures of network integration and segregation in the seeder subnetwork. These results demonstrate the different developmental patterns when analyzing the connectome stratified according to its rich-club and the potential of utilizing this subnetwork analysis to reveal the evolution of brain architectural alterations across the life-span

Crustal and Mantle Deformation Inherited From Obduction of the Semail Ophiolite (Oman) and Continental Collision (Zagros)

Abstract: A common deviation from typical subduction models occurs when thrust sheets of oceanic crust and upper‐mantle rocks are emplaced over more buoyant continental lithosphere. The archetypal example of ophiolite obduction is the Semail ophiolite in the United Arab Emirates (UAE)‐Oman orogenic belt, formed and obducted onto the Arabian continental margin during the Late Cretaceous. The Strait of Hormuz syntaxis, the northern extent of the UAE‐Oman mountains, marks the transition from ocean‐continent convergence in the Gulf of Oman to continental collision along the Zagros Mountains. Based on new seismic data from a focused recording network, we infer continental crustal and mantle deformation in the northeastern corner of the Arabian plate (including the southern Zagros and the UAE‐Oman mountains), using observations from anisotropic tomography and shear‐wave splitting (SWS) measurements. We recover a change of ∼90° (from approximately WNW to nearly NS) in the axis of fast‐anisotropic orientations in the crust from the Zagros to the UAE‐Oman mountain belt, consistent with the dominant strike of the orogenic belts. We also find evidence in our SWS parameters for localized fossil deformation in the lithospheric mantle underlying the UAE‐Oman mountain range, possibly related to stress‐induced tectonism triggered by north‐east oriented underthrusting of the proto‐Arabian continental margin beneath the overriding Semail ophiolite. Shear‐wave‐splitting anisotropy orientations along two transects across the northern Musandam peninsula, averaging 15° anticlockwise from the north, provide the first geophysical verification of previous geological evidence that suggests a NE polarity of the Late Cretaceous Oman subduction zone system

Geophysical imaging of ophiolite structure in the United Arab Emirates.

The Oman-United Arab Emirates ophiolite has been used extensively to document the geological processes that form oceanic crust. The geometry of the ophiolite, its extension into the Gulf of Oman, and the nature of the crust that underlies it are, however, unknown. Here, we show the ophiolite forms a high velocity, high density, >15 km thick east-dipping body that during emplacement flexed down a previously rifted continental margin thereby contributing to subsidence of flanking sedimentary basins. The western limit of the ophiolite is defined onshore by the Semail thrust while the eastern limit extends several km offshore, where it is defined seismically by a ~40-45°, east-dipping, normal fault. The fault is interpreted as the southwestern margin of an incipient suture zone that separates the Arabian plate from in situ Gulf of Oman oceanic crust and mantle presently subducting northwards beneath the Eurasian plate along the Makran trench

The Permian Cornubian granite batholith, SW England; Part 1: Field, structural, and petrological constraints

This is the author accepted manuscript. The final version is available from the Geological Society of America via the DOI in this recordThe Permian Cornubian granite batholith (295−275 Ma) in SW England includes seven major plutons and numerous smaller stocks extending for ∼250 km from the Isles of Scilly in the WSW to Dartmoor in the ENE. The granites are peraluminous and classified as crustal melt S-type, predominantly two-mica granites, and biotite or tourmaline monzo- and syenogranites, with subordinate minor topaz granite and lithium mica granite. The granites and their host rocks are pervasively mineralized with tin (cassiterite), tungsten (wolframite, ferberite), copper (chalcopyrite, chalcocite, bornite), arsenic (arsenopyrite), and zinc (sphalerite) mineralized lodes. Quartz-muscovite selvedges (greisen-bordered) also contain enrichment of lithophile elements such as boron (tourmaline), fluorine (fluorite), and lithium (lithium-micas such as lepidolite and zinnwaldite). They are derived from both muscovite and biotite dehydration melting of pelitic-psammitic rocks and intruded from a common source along the length of the batholith. Pressure estimates from andalusite and cordierite-bearing hornfels in the contact metamorphic aureole (150 ± 100 MPa) show that the granites intruded to 3 km depth. Cupolas around the Land’s End and Tregonning granites show aplite-pegmatite dikes and tourmaline + quartz + muscovite veins (greisen) that are frequently mineralized. Synchronous intrusions of lamprophyre dikes suggest an additional heat source for crustal melting may have been from underplating of alkaline magmas. The lack of significant erosion means that the source region is not exposed. In an accompanying paper (Part 2; Watts et al., 2024), gravity modeling reveals possible solutions for the shape and depth of the granite and the structure of the lower crust. We present a new model for the Land’s End, Tregonning, and Carnmenellis granites showing a mid-crustal source composed of amphibolite facies migmatites bounded by prominent seismic reflectors, with upward expanding dikes feeding inter-connected granite laccoliths that show inflated cupolas with shallow contact metamorphism. The Cornubian granites intruded >90 m.y. after obduction of the Lizard ophiolite complex, and after Upper Devonian−Carboniferous Variscan compressional, and later extensional, deformation of the surrounding Devonian country rocks. Comparisons are made between the Cornubian batholith and the Patagonian batholith in Chile, the Himalayan leucogranites, and the Baltoro granite batholith along the Karakoram range in northern Pakistan

Quantum W-symmetry in AdS_3

It has recently been argued that, classically, massless higher spin theories in AdS_3 have an enlarged W_N-symmetry as the algebra of asymptotic isometries. In this note we provide evidence that this symmetry is realised (perturbatively) in the quantum theory. We perform a one loop computation of the fluctuations for a massless spin $s$ field around a thermal AdS_3 background. The resulting determinants are evaluated using the heat kernel techniques of arXiv:0911.5085. The answer factorises holomorphically, and the contributions from the various spin $s$ fields organise themselves into vacuum characters of the W_N symmetry. For the case of the hs(1,1) theory consisting of an infinite tower of massless higher spin particles, the resulting answer can be simply expressed in terms of (two copies of) the MacMahon function.Comment: 23 pages; v2: References adde

The Jurassic–Cretaceous depositional and tectonic evolution of the southernwestern margin of the Neotethys Ocean, Northern Oman and United Arab Emirates

The concept that the autochthonous, parautochthonous and allochthonous Permian–Cretaceous sequences in the United Arab Emirates (UAE) and Oman record the transition from platform, slope to basin sedimentation within the southern part of Neotethys has been fundamental to the interpretation of the geological history of the region. The results of a major geological mapping programme of the UAE, carried out by the British Geological Survey for the Federal Government of the UAE, coupled with the detailed examination of key sections within northern Oman has led to a re-evaluation of the geological evolution of this region. This detailed study has led to a greater appreciation of the sedimentology and depositional setting of the sediments laid down along the northeastern Arabian continental margin during the Jurassic to Cretaceous, allowing a more refined model of Neotethys Ocean basin evolution to be established. The model charts the progressive breakup of the Arabian continental margin and closure of Neotethys during the mid to late Cretaceous and is divided into three main stages: Stage 1—Initial rifting and formation of the Neotethys Ocean, followed by a prolonged period of stable, passive margin sedimentation which extended from the Permian to Late Jurassic times; Stage 2—Uplift and erosion of the shelf margin during the Late Jurassic to Early Cretaceous, coincident with increased carbonate-clastic sedimentation in the outer ramp, distal slope and basinal areas; Stage 3—Increased instability during the Late Cretaceous leading to the breakup of the platform margin and foreland basin sedimentation accompanying the obduction of the Oman-UAE ophiolite. Data obtained for the upper part of the platform and platform margin to slope successions has revealed that the topography of the “shelf”-slope-basinal margin was more subdued than previously thought, with this more gentle ramp margin morphology persisting until early to mid-Cretaceous times when the platform margin started to become unstable during ophiolite obduction. The thrust-repeated allochthonous sedimentary rocks of the Hamrat Duru Group were deposited on the outer platform margin/lower slope rise to basinal plain of this basin margin and includes the dismembered remains of two turbidite fan systems which fed carbonate-rich detritus into deeper parts of the ocean. A re-evaluation of the chert-rich sequences, previously equated with deposition on the abyssal plain of Neotethys, has led to the conclusion that they may record sedimentation at a much shallower level within a starved ocean basin, possibly in a mid-ramp (above storm wave base) to outer ramp setting. A marked change in basin dynamics occurred during the mid-Cretaceous leading to the development of a shallow ramp basin margin in Oman with terrestrial to shallow marine sedimentary rocks interdigitating with red siliceous mudstones. By contrast, the contemporaneous succession in the Dibba Zone of the UAE indicates considerable instability on a steep shelf break. This instability is recorded by the presence of several major olistostrome deposits within the Aruma Group of the UAE which are thought to have been generated in advance of the rapidly obducting Oman-UAE ophiolite

Exponential Random Graph Modeling for Complex Brain Networks

Exponential random graph models (ERGMs), also known as p* models, have been utilized extensively in the social science literature to study complex networks and how their global structure depends on underlying structural components. However, the literature on their use in biological networks (especially brain networks) has remained sparse. Descriptive models based on a specific feature of the graph (clustering coefficient, degree distribution, etc.) have dominated connectivity research in neuroscience. Corresponding generative models have been developed to reproduce one of these features. However, the complexity inherent in whole-brain network data necessitates the development and use of tools that allow the systematic exploration of several features simultaneously and how they interact to form the global network architecture. ERGMs provide a statistically principled approach to the assessment of how a set of interacting local brain network features gives rise to the global structure. We illustrate the utility of ERGMs for modeling, analyzing, and simulating complex whole-brain networks with network data from normal subjects. We also provide a foundation for the selection of important local features through the implementation and assessment of three selection approaches: a traditional p-value based backward selection approach, an information criterion approach (AIC), and a graphical goodness of fit (GOF) approach. The graphical GOF approach serves as the best method given the scientific interest in being able to capture and reproduce the structure of fitted brain networks

Rational Design of Pathogen-Mimicking Amphiphilic Materials as Nanoadjuvants

An opportunity exists today for cross-cutting research utilizing advances in materials science, immunology, microbial pathogenesis, and computational analysis to effectively design the next generation of adjuvants and vaccines. This study integrates these advances into a bottom-up approach for the molecular design of nanoadjuvants capable of mimicking the immune response induced by a natural infection but without the toxic side effects. Biodegradable amphiphilic polyanhydrides possess the unique ability to mimic pathogens and pathogen associated molecular patterns with respect to persisting within and activating immune cells, respectively. The molecular properties responsible for the pathogen-mimicking abilities of these materials have been identified. The value of using polyanhydride nanovaccines was demonstrated by the induction of long-lived protection against a lethal challenge of Yersinia pestis following a single administration ten months earlier. This approach has the tantalizing potential to catalyze the development of next generation vaccines against diseases caused by emerging and re-emerging pathogens

An approach for the identification of targets specific to bone metastasis using cancer genes interactome and gene ontology analysis

Metastasis is one of the most enigmatic aspects of cancer pathogenesis and is a major cause of cancer-associated mortality. Secondary bone cancer (SBC) is a complex disease caused by metastasis of tumor cells from their primary site and is characterized by intricate interplay of molecular interactions. Identification of targets for multifactorial diseases such as SBC, the most frequent complication of breast and prostate cancers, is a challenge. Towards achieving our aim of identification of targets specific to SBC, we constructed a 'Cancer Genes Network', a representative protein interactome of cancer genes. Using graph theoretical methods, we obtained a set of key genes that are relevant for generic mechanisms of cancers and have a role in biological essentiality. We also compiled a curated dataset of 391 SBC genes from published literature which serves as a basis of ontological correlates of secondary bone cancer. Building on these results, we implement a strategy based on generic cancer genes, SBC genes and gene ontology enrichment method, to obtain a set of targets that are specific to bone metastasis. Through this study, we present an approach for probing one of the major complications in cancers, namely, metastasis. The results on genes that play generic roles in cancer phenotype, obtained by network analysis of 'Cancer Genes Network', have broader implications in understanding the role of molecular regulators in mechanisms of cancers. Specifically, our study provides a set of potential targets that are of ontological and regulatory relevance to secondary bone cancer.Comment: 54 pages (19 pages main text; 11 Figures; 26 pages of supplementary information). Revised after critical reviews. Accepted for Publication in PLoS ON