22 research outputs found
Unauthorized Horizontal Spread in the Laboratory Environment: The Tactics of Lula, a Temperate Lambdoid Bacteriophage of Escherichia coli
We investigated the characteristics of a lambdoid prophage, nicknamed Lula, contaminating E. coli strains from several sources, that allowed it to spread horizontally in the laboratory environment. We found that new Lula infections are inconspicuous; at the same time, Lula lysogens carry unusually high titers of the phage in their cultures, making them extremely infectious. In addition, Lula prophage interferes with P1 phage development and induces its own lytic development in response to P1 infection, turning P1 transduction into an efficient vehicle of Lula spread. Thus, using Lula prophage as a model, we reveal the following principles of survival and reproduction in the laboratory environment: 1) stealth (via laboratory material commensality), 2) stability (via resistance to specific protocols), 3) infectivity (via covert yet aggressive productivity and laboratory protocol hitchhiking). Lula, which turned out to be identical to bacteriophage phi80, also provides an insight into a surprising persistence of T1-like contamination in BAC libraries
Quantum phase transition in a single-molecule quantum dot
Quantum criticality is the intriguing possibility offered by the laws of
quantum mechanics when the wave function of a many-particle physical system is
forced to evolve continuously between two distinct, competing ground states.
This phenomenon, often related to a zero-temperature magnetic phase transition,
can be observed in several strongly correlated materials such as heavy fermion
compounds or possibly high-temperature superconductors, and is believed to
govern many of their fascinating, yet still unexplained properties. In contrast
to these bulk materials with very complex electronic structure, artificial
nanoscale devices could offer a new and simpler vista to the comprehension of
quantum phase transitions. This long-sought possibility is demonstrated by our
work in a fullerene molecular junction, where gate voltage induces a crossing
of singlet and triplet spin states at zero magnetic field. Electronic tunneling
from metallic contacts into the quantum dot provides here the
necessary many-body correlations to observe a true quantum critical behavior.Comment: 8 pages, 5 figure
Single-molecule sensing electrode embedded in-plane nanopore
Electrode-embedded nanopore is considered as a promising device structure for label-free single-molecule sequencing, the principle of which is based on nucleotide identification via transverse electron tunnelling current flowing through a DNA translocating through the pore. Yet, fabrication of a molecular-scale electrode-nanopore detector has been a formidable task that requires atomic-level alignment of a few nanometer sized pore and an electrode gap. Here, we report single-molecule detection using a nucleotide-sized sensing electrode embedded in-plane nanopore. We developed a self-alignment technique to form a nanopore-nanoelectrode solid-state device consisting of a sub-nanometer scale electrode gap in a 15 nm-sized SiO2 pore. We demonstrate single-molecule counting of nucleotide-sized metal-encapsulated fullerenes in a liquid using the electrode-integrated nanopore sensor. We also performed electrical identification of nucleobases in a DNA oligomer, thereby suggesting the potential use of this synthetic electrode-in-nanopore as a platform for electrical DNA sequencing
Nanogap structures for molecular nanoelectronics
This study is focused on the realization of nanodevices for nano and molecular electronics, based on molecular interactions in a metal-molecule-metal (M-M-M) structure. In an M-M-M system, the electronic function is a property of the structure and can be characterized through I/V measurements. The contact between the metals and the molecule was obtained by gold nanogaps (with a dimension of less than 10 nm), produced with the electromigration technique. The nanogap fabrication was controlled by a custom hardware and the related software system. The studies were carried out through experiments and simulations of organic molecules, in particular oligothiophenes
Tunneling Spectra of Individual Magnetic Endofullerene Molecules
The manipulation of single magnetic molecules may enable new strategies for
high-density information storage and quantum-state control. However, progress
in these areas depends on developing techniques for addressing individual
molecules and controlling their spin. Here we report success in making
electrical contact to individual magnetic N@C60 molecules and measuring spin
excitations in their electron tunneling spectra. We verify that the molecules
remain magnetic by observing a transition as a function of magnetic field which
changes the spin quantum number and also the existence of nonequilibrium
tunneling originating from low-energy excited states. From the tunneling
spectra, we identify the charge and spin states of the molecule. The measured
spectra can be reproduced theoretically by accounting for the exchange
interaction between the nitrogen spin and electron(s) on the C60 cage.Comment: 7 pages, 4 figures. Typeset in LaTeX, updated text of previous
versio
Understanding the structure of the first atomic contact in gold
We have studied experimentally jump-to-contact (JC) and jump-out-of-contact (JOC) phenomena in gold electrodes. JC can be observed at first contact when two metals approach each other, while JOC occurs in the last contact before breaking. When the indentation depth between the electrodes is limited to a certain value of conductance, a highly reproducible behaviour in the evolution of the conductance can be obtained for hundreds of cycles of formation and rupture. Molecular dynamics simulations of this process show how the two metallic electrodes are shaped into tips of a well-defined crystallographic structure formed through a mechanical annealing mechanism. We report a detailed analysis of the atomic configurations obtained before contact and rupture of these stable structures and obtained their conductance using first-principles quantum transport calculations. These results help us understand the values of conductance obtained experimentally in the JC and JOC phenomena and improve our understanding of atomic-sized contacts and the evolution of their structural characteristics.This work was supported by the Spanish government through grants FIS2010-21883, CONSOLIDER CSD2007-0010, Generalitat Valenciana through PROMETEO/2012/011, ACOMP/2012/127 and Feder funds from E.U