Enhancement of Trichoderma harzianum CFAM-422 for cellulase and hemicellulase production by deletion of the carbon catabolite repressor gene cre1.

Carbon catabolite repression (CCR) is a mechanism by which microorganisms can utilize preferably highly energetic compounds over those of difficult degradation. For Trichoderma reesei, the protein that acts as repressor in the presence of glucose is CRE1. In this project, we aim to delete cre1 gene in Trichoderma harzianum CFAM-422 and obtain mutants with enhanced production of biomass degrading enzymes. Disruption of cre1 in T. harzianum CFAM-422 was performed by gene replacement of cre1 for hph (hygromycin B phosphotransferase) via homologous recombination. Hygromycin resistant mutants and parental strains enzyme production was evaluated in both inductive and repressive conditions in four different carbon sources. Enzymatic indexes (EI) were determined and compared. All genetically stable transformants showed increased enzymatic index under inductive conditions and modest inhibition under repressive conditions for most carbon sources, indicating that the deletion of cre1 in T. harzianum can be beneficial to cellulase and hemicellulase production with reduced product inhibition.SINAFERM; SHEB. 3 a 6 de setembro. Seção Trabalhos. Ref. 59019

Atmospheric gamma-ray observation with the BETS detectorfor calibrating atmospheric neutrino flux calculations

We observed atmospheric gamma-rays around 10 GeV at balloon altitudes (15~25 km) and at a mountain (2770 m a.s.l). The observed results were compared with Monte Carlo calculations to find that an interaction model (Lund Fritiof1.6) used in an old neutrino flux calculation was not good enough for describing the observed values. In stead, we found that two other nuclear interaction models, Lund Fritiof7.02 and dpmjet3.03, gave much better agreement with the observations. Our data will serve for examining nuclear interaction models and for deriving a reliable absolute atmospheric neutrino flux in the GeV region.We observed atmospheric gamma-rays around 10 GeV at balloon altitudes (15~25 km) and at a mountain (2770 m a.s.l). The observed results were compared with Monte Carlo calculations to find that an interaction model (Lund Fritiof1.6) used in an old neutrino flux calculation was not good enough for describing the observed values. In stead, we found that two other nuclear interaction models, Lund Fritiof7.02 and dpmjet3.03, gave much better agreement with the observations. Our data will serve for examining nuclear interaction models and for deriving a reliable absolute atmospheric neutrino flux in the GeV region

Study of cosmic ray interaction model based on atmospheric muons for the neutrino flux calculation

We have studied the hadronic interaction for the calculation of the atmospheric neutrino flux by summarizing the accurately measured atmospheric muon flux data and comparing with simulations. We find the atmospheric muon and neutrino fluxes respond to errors in the $\pi$-production of the hadronic interaction similarly, and compare the atmospheric muon flux calculated using the HKKM04 code with experimental measurements. The $\mu^++\mu^-$ data show good agreement in the 1$\sim$30 GeV/c range, but a large disagreement above 30 GeV/c. The the $\mu^+/\mu^-$ ratio shows sizable differences at lower and higher momenta for opposite directions. As the disagreements are considered to be due to assumptions in the hadronic interaction model, we try to improve it phenomenologically based on the quark parton model. The improved interaction model reproduces the observed muon flux data well. The calculation of the atmospheric neutrino flux will be reported in the following pape

Three-flavor atmospheric neutrino anomaly

We investigate the indications of flavor oscillations that come from the anomalous flavor composition of the atmospheric neutrino flux observed in some underground experiments. We study the information coming from the neutrino-induced $\mu$-like and $e$-like events both in the sub-GeV energy range (Kamiokande, IMB, Fr{\'e}jus, and NUSEX experiments) and in the multi-GeV energy range (Kamiokande experiment). First we analyze all the data in the limits of pure $\nu_\mu\leftrightarrow\nu_\tau$ and $\nu_\mu\leftrightarrow\nu_e$ oscillations. We obtain that $\nu_\mu\leftrightarrow\nu_e$ oscillations provide a better fit, in particular to the multi-GeV data. Then we perform a three-flavor analysis in the hypothesis of dominance of one neutrino square mass difference, $m^2$, implying that the neutrino mixing is parametrized by two angles, $(\psi,\,\phi)\in[0,\,\pi/2]$. We explore the space $(m^2,\,\psi,\,\phi)$ exhaustively, and find the regions favored by the oscillation hypothesis. The results are displayed in a form suited to the comparison with other flavor oscillation searches at accelerator, reactor, and solar $\nu$ experiments. In the analysis, we pay particular attention to the earth matter effects, to the correlation of the uncertainties, and to the symmetry properties of the oscillation probability.Comment: 25 pages (RevTeX) + 12 figures, requires epsfig.sty. All the figures are bitmapped. Postscript figures with full resolution are available at ftp://ftp.sns.ias.edu/pub/lisi/atmpaper

Assessing Contention Effects on MPI_Alltoall Communications

12 pagesInternational audienceOne of the most important collective communication patterns used in scientific applications is the complete exchange, also called All-to-All. Although efficient algorithms have been studied for specific networks, general solutions like those available in well-known MPI distributions (e.g. the MPI_Alltoall operation) are strongly influenced by the congestion of network resources. In this paper we present an integrated approach to model the performance of the All-to-All collective operation, which consists in identifying a contention signature that characterizes a given network environment, using it to augment a contention-free communication model. This approach, assessed by experimental results, allows an accurate prediction of the performance of the All-to-All operation over different network architectures with a small overhead

Accelerator and Reactor Neutrino Oscillation Experiments in a Simple Three-Generation Framework

We present a new approach to the analysis of neutrino oscillation experiments, in the one mass-scale limit of the three-generation scheme. In this framework we reanalyze and recombine the most constraining accelerator and reactor data, in order to draw precise bounds in the new parameter space. We consider our graphical representations as particularly suited to show the interplay among the different oscillation channels. Within the same framework, the discovery potential of future short and long baseline experiments is also investigated, in the light of both the recent signal from the LSND experiment and the atmospheric neutrino anomaly.Comment: uuencoded compressed tar file. Figures (13) available by ftp to ftp://eku.sns.ias.edu/pub/lisi/ (192.16.204.30). Submitted to Physical Review

Status of global fits to neutrino oscillations

We review the present status of global analyses of neutrino oscillations, taking into account the most recent neutrino data including the latest KamLAND and K2K updates presented at Neutrino2004, as well as state-of-the-art solar and atmospheric neutrino flux calculations. We give the two-neutrino solar + KamLAND results, as well as two-neutrino atmospheric + K2K oscillation regions, discussing in each case the robustness of the oscillation interpretation against departures from the Standard Solar Model and the possible existence of non-standard neutrino physics. Furthermore, we give the best fit values and allowed ranges of the three-flavour oscillation parameters from the current worlds' global neutrino data sample and discuss in detail the status of the small parameters \alpha \equiv \Dms/\Dma as well as $\sin^2\theta_{13}$, which characterize the strength of CP violating effects in neutrino oscillations. We also update the degree of rejection of four-neutrino interpretations of the LSND anomaly in view of the most recent developments.Comment: v6: In the last Appendix we provide updated neutrino oscillation results which take into account the relevant oscillation data released by the MINOS and KamLAND collaboration