Bat response to Carolina bays and wetland restoration in the southeastern U.S. Coastal Plain

Abstract: Bat activity in the southeastern United States is concentrated over riparian areas and wetland habitats. The restoration and creation of wetlands for mitigation purposes is becoming common in the Southeast. Understanding the effects of these restoration efforts on wetland flora and fauna is thus becoming increasingly important. Because bats (Order: Chiroptera) consist of many species that are of conservation concern and are commonly associated with wetland and riparian habitats in the Southeast (making them a good general indicator for the condition of wetland habitats), we monitored bat activity over restored and reference Carolina bays surrounded by pine savanna (Pinus spp.) or mixed pine-hardwood habitat types at the Savannah River Site in South Carolina. In order to determine how wetland restoration efforts affected the bat community, we monitored bat activity above drained Carolina bays pre- and post-restoration. Our results indicate that bat activity was greater over reference (i.e., undrained) than drained bays prior to the restorative efforts. One year following combined hydrologic and vegetation treatment, however, bat activity was generally greater over restored than reference bays. Bat activity was also greater over both reference and restored bays than in random, forested interior locations. We found significantly more bat activity after restoration than prior to restoration for all but one species in the treatment bays, suggesting that Carolina bay restoration can have almost immediate positive impacts on bat activity

Spatial and Temporal Distribution of Clouds Observed by MODIS Onboard the Terra and Aqua Satellites

The Moderate Resolution Imaging Spectroradiometer (MODIS) was developed by NASA and launched aboard the Terra spacecraft on December 18, 1999 and Aqua spacecraft on May 4, 2002. A comprehensive set of remote sensing algorithms for the retrieval of cloud physical and optical properties have enabled over twelve years of continuous observations of cloud properties from Terra and over nine years from Aqua. The archived products from these algorithms include 1 km pixel-level (Level-2) and global gridded Level-3 products. In addition to an extensive cloud mask, products include cloud-top properties (temperature, pressure, effective emissivity), cloud thermodynamic phase, cloud optical and microphysical parameters (optical thickness, effective particle radius, water path), as well as derived statistics. Results include the latitudinal distribution of cloud optical and radiative properties for both liquid water and ice clouds, as well as latitudinal distributions of cloud top pressure and cloud top temperature. MODIS finds the cloud fraction, as derived by the cloud mask, is nearly identical during the day and night, with only modest diurnal variation. Globally, the cloud fraction derived by the MODIS cloud mask is approx.67%, with somewhat more clouds over land during the afternoon and less clouds over ocean in the afternoon, with very little difference in global cloud cover between Terra and Aqua. Overall, cloud fraction over land is approx.55%, with a distinctive seasonal cycle, whereas the ocean cloudiness is much higher, around 72%, with much reduced seasonal variation. Cloud top pressure and temperature have distinct spatial and temporal patterns, and clearly reflect our understanding of the global cloud distribution. High clouds are especially prevalent over the northern hemisphere continents between 30 and 50 . Aqua and Terra have comparable zonal cloud top pressures, with Aqua having somewhat higher clouds (cloud top pressures lower by 100 hPa) over land due to afternoon deep convection. The coldest cloud tops (colder than 230 K) generally occur over Antarctica and the high clouds in the tropics (ITCZ and the deep convective clouds over the western tropical Pacific and Indian sub-continent)

How Is Chimpanzee Self-Control Influenced by Social Setting?

Self-control is often required in natural situations involving interactions with other individuals, and personal self-control can be compromised if other individuals act impulsively. In this study, we tested self-control in pairs of chimpanzees in a variety of settings where at least one chimpanzee of each pair performed an established test for self-control in which candies accumulated one at time as long as the chimpanzee did not eat any of them. When tested alone, some chimpanzees exhibited greater self-control as compared to when tested alongside a chimpanzee that independently performed the same type of test. However, when the nonfocal animal freely consumed rewards while the focal chimpanzee performed the accumulation task, the self-control of some focal chimpanzees was elevated as compared to when working alone. Finally, when the focal and nonfocal animals worked jointly on the same test and the number of rewards accumulated was dependent on both animals’ continued ability to inhibit eating the items, chimpanzees performed the same when housed together or in adjacent enclosures. On the whole, the effects of social setting were modest, but these results may relate to the literature on vicarious depletion of self-control, and they present interesting avenues for future research

Multi-shot Echo Planar Imaging for accelerated Cartesian MR Fingerprinting: An alternative to conventional spiral MR Fingerprinting.

PURPOSE: To develop an accelerated Cartesian MRF implementation using a multi-shot EPI sequence for rapid simultaneous quantification of T1 and T2 parameters. METHODS: The proposed Cartesian MRF method involved the acquisition of highly subsampled MR images using a 16-shot EPI readout. A linearly varying flip angle train was used for rapid, simultaneous T1 and T2 quantification. The results were compared to a conventional spiral MRF implementation. The acquisition time per slice was 8s and this method was validated on two different phantoms and three healthy volunteer brains in vivo. RESULTS: Joint T1 and T2 estimations using the 16-shot EPI readout are in good agreement with the spiral implementation using the same acquisition parameters (<4% deviation for T1 and <6% deviation for T2). The T1 and T2 values also agree with the conventional values previously reported in the literature. The visual qualities of fine brain structures in the multi-parametric maps generated by multi-shot EPI-MRF and Spiral-MRF implementations were comparable. CONCLUSION: The multi-shot EPI-MRF method generated accurate quantitative multi-parametric maps similar to conventional Spiral-MRF. This multi-shot approach achieved considerable k-space subsampling and comparatively short TRs in a similar manner to spirals and therefore provides an alternative for performing MRF using an accelerated Cartesian readout; thereby increasing the potential usability of MRF.The research leading to these results has received funding from the European Commission H2020 Framework Programme (H2020- MSCAITN- 2014), number 642685 MacSeNet, the Engineering and Physical Sciences Research Council (EPSRC) platform Compressed Quantitative MRI grant, number EP/M019802/1 and the Scottish Research Partnership in Engineering (SRPe) award, number SRPe PECRE1718/ 17

scAmpi—A versatile pipeline for single-cell RNA-seq analysis from basics to clinics

Single-cell RNA sequencing (scRNA-seq) has emerged as a powerful technique to decipher tissue composition at the single-cell level and to inform on disease mechanisms, tumor heterogeneity, and the state of the immune microenvironment. Although multiple methods for the computational analysis of scRNA-seq data exist, their application in a clinical setting demands standardized and reproducible workflows, targeted to extract, condense, and display the clinically relevant information. To this end, we designed scAmpi (Single Cell Analysis mRNA pipeline), a workflow that facilitates scRNA-seq analysis from raw read processing to informing on sample composition, clinically relevant gene and pathway alterations, and in silico identification of personalized candidate drug treatments. We demonstrate the value of this workflow for clinical decision making in a molecular tumor board as part of a clinical study

Intermanifold similarities in partial photoionization cross sections of helium

Using the eigenchannel R-matrix method we calculate partial photoionization cross sections from the ground state of the helium atom for incident photon energies up to the N=9 manifold. The wide energy range covered by our calculations permits a thorough investigation of general patterns in the cross sections which were first discussed by Menzel and co-workers [Phys. Rev. A {\bf 54}, 2080 (1996)]. The existence of these patterns can easily be understood in terms of propensity rules for autoionization. As the photon energy is increased the regular patterns are locally interrupted by perturber states until they fade out indicating the progressive break-down of the propensity rules and the underlying approximate quantum numbers. We demonstrate that the destructive influence of isolated perturbers can be compensated with an energy-dependent quantum defect.Comment: 10 pages, 10 figures, replacement with some typos correcte