Seasonal patterns of metals and nutrients in Phragmites australis (Cav.) Trin. ex Steudel in a constructed wetland in the west of Ireland

© 2017 Elsevier B.V. An understanding of the seasonal variation in the standing stock of metals and nutrients in emergent vegetation of constructed wetlands (CWs), as well as the amounts present in aboveground (AG) and belowground (BG) biomass, is crucial to their design and management. Given that biomass harvesting is a labour and time consuming operation, a paucity of information currently exists on accumulation and standing stocks in biomass in CWs, in particular in North Western European countries. To address this knowledge gap, this paper examined the seasonal variations of metals and nutrients in Phragmites australis (Cav.) Trin. ex Steudel in a CW treating municipal wastewater, with a view to identifying an optimal time for biomass harvesting of the AG vegetation. Although the AG biomass was greatest in August (1636 ± 507 g m −2 ), the maximum concentrations and accumulations of metals and nutrients occurred at different times throughout the duration of the study (April to November). Furthermore, with the exception of zinc and nitrogen, metals and nutrients measured in BG biomass ranged from 66% (phosphorus) to greater than 80% (nickel and chromium) of the AG biomass. This indicates that analysis of only the emergent shoots may significantly underestimate the metal and nutrient uptake and capacity of the plant. In order to effectively target the bulk of metals and nutrients, an AG harvest in late August or September is suggested

Sciomyzidae (Diptera) Assemblages in Constructed and Natural Wetlands: Implications for Constructed Wetland Design

Wetlands constructed primarily for the treatment of wastewaters have been shown to have a role in enhancing biodiversity. However, while most biodiversity studies of constructed wetlands focus on the larger, more iconic animal groups, there is a paucity of information on the aerial phases of wetland invertebrate species associated with constructed wetlands. This study compares Sciomyzidae (Diptera) assemblages, established indicators of wetland dipteran communities, in Irish constructed and natural wetlands, in addition to determining the impacts of water quality and surrounding habitats on Sciomyzidae community structure. Natural wetlands had significantly greater species richness, abundances and diversity (measured as Shannon’s entropy) of sciomyzid flies than constructed wetlands. Nevertheless, although concentrations of nitrogen and phosphorus in waters were significantly greater in constructed wetlands, seven of the eight constructed wetlands examined hosted species of Sciomyzidae listed as scarce or threatened in Britain. In addition, sciomyzid species richness increased as areas of semi-natural habitat immediately surrounding constructed and natural wetlands increased. Composition of Sciomyzidae assembalges in both natural and constructed wetlands were analysed. The results of this study demonstrate that constructed wetlands can be important contributors to biodiversity particularly in the context of current losses of natural wetlands worldwide. The importance of habitats immediately surrounding constructed wetlands also highlights the need for relatively simple design recommendations (e.g. wet grassland creation or judicious planting of wetland trees) that could enhance the biodiversity of existing and future constructed wetlands

Habitat suitability assessment of constructed wetlands for the smooth newt (Lissotriton vulgaris [Linnaeus, 1758]): A comparison with natural wetlands

Given the current decline of natural wetlands worldwide and the consequent negative impacts on amphibians, wetlands constructed for the treatment of wastewaters have the potential to play a role in the protection of these animals. However, there is a paucity of information regarding the value of constructed wetlands (CWs) to amphibians, particularly relating to the terrestrial phase of their life-cycle. This study compares the terrestrial habitats of natural wetlands (NWs) and CWs as refuges for the smooth newt (Lissotriton vulgaris, [L., 1758]) with the aim of developing recommendations for CWs (both new and existing) to enhance their usefulness as newt-friendly habitats. Terrestrial habitats surrounding NWs and CWs were mapped using ArcGIS. Potential barriers to newt movement in addition to the presence of features such as wood or stone which could act as potential newt refuges were also mapped. Natural wetlands had significantly more terrestrial habitat types than CWs and while woodlands at both wetland types were most likely to contain features of benefit to newts, terrestrial habitats of NWs contained more features compared to those of CWs. The application of a Habitat Suitability Index, which assesses the likelihood of the presence of newts, resulted in seven of eight NWs compared to only two of eight CWs receiving “good” scores, the lower scores for CWs being due primarily to the presence of a barrier to newt movement. Recommendations for enhancing the design and management of CWs for smooth newts include less intensive ground maintenance, reduction of barriers to newt movement, judicious planting of suitable trees or shrubs and the provision of additional refuges such as wood or stone

Dextral and sinistral Amphidromus inversus (Gastropoda: Pulmonata: Camaenidae) produce dextral sperm

Coiling direction in pulmonate gastropods is determined by a single gene via a maternal effect, which causes cytoskeletal dynamics in the early embryo of dextral gastropods to be the mirror image of the same in sinistral ones. We note that pulmonate gastropod spermatids also go through a helical twisting during their maturation. Moreover, we suspect that the coiling direction of the helical elements of the spermatozoa may affect their behaviour in the female reproductive tract, giving rise to the possibility that sperm chirality plays a role in the maintenance of whole-body chiral dimorphism in the tropical arboreal gastropod Amphidromus inversus (Müller, 1774). For these reasons, we investigated whether there is a relationship between a gastropod’s body chirality and the chirality of the spermatozoa it produces. We found that spermatozoa in A. inversus are always dextrally coiled, regardless of the coiling direction of the animal itself. However, a partial review of the literature on sperm morphology in the Pulmonata revealed that chiral dimorphism does exist in certain species, apparently without any relationship with the coiling direction of the body. Though our study shows that body and sperm chirality follows independent developmental pathways, it gives rise to several questions that may be relevant to the understanding of the chirality of spermatid ultrastructure and spermatozoan motility and sexual selection

Bridging knowing and proving in mathematics An essay from a didactical perspective

Text of a talk at the conference "Explanation and Proof in Mathematics: Philosophical and Educational Perspective" held in Essen in November 2006International audienceThe learning of mathematics starts early but remains far from any theoretical considerations: pupils' mathematical knowledge is first rooted in pragmatic evidence or conforms to procedures taught. However, learners develop a knowledge which they can apply in significant problem situations, and which is amenable to falsification and argumentation. They can validate what they claim to be true but using means generally not conforming to mathematical standards. Here, I analyze how this situation underlies the epistemological and didactical complexities of teaching mathematical proof. I show that the evolution of the learners' understanding of what counts as proof in mathematics implies an evolution of their knowing of mathematical concepts. The key didactical point is not to persuade learners to accept a new formalism but to have them understand how mathematical proof and statements are tightly related within a common framework; that is, a mathematical theory. I address this aim by modeling the learners' way of knowing in terms of a dynamic, homeostatic system. I discuss the roles of different semiotic systems, of the types of actions the learners perform and of the controls they implement in constructing or validating knowledge. Particularly with modern technological aids, this model provides a basis designing didactical situations to help learners bridge the gap between pragmatics and theory

Calcium Homeostasis in Myogenic Differentiation Factor 1 (MyoD)-Transformed, Virally-Transduced, Skin-Derived Equine Myotubes

Dysfunctional skeletal muscle calcium homeostasis plays a central role in the pathophysiology of several human and animal skeletal muscle disorders, in particular, genetic disorders associated with ryanodine receptor 1 (RYR1) mutations, such as malignant hyperthermia, central core disease, multiminicore disease and certain centronuclear myopathies. In addition, aberrant skeletal muscle calcium handling is believed to play a pivotal role in the highly prevalent disorder of Thoroughbred racehorses, known as Recurrent Exertional Rhabdomyolysis. Traditionally, such defects were studied in human and equine subjects by examining the contractile responses of biopsied muscle strips exposed to caffeine, a potent RYR1 agonist. However, this test is not widely available and, due to its invasive nature, is potentially less suitable for valuable animals in training or in the human paediatric setting. Furthermore, increasingly, RYR1 gene polymorphisms (of unknown pathogenicity and significance) are being identified through next generation sequencing projects. Consequently, we have investigated a less invasive test that can be used to study calcium homeostasis in cultured, skin-derived fibroblasts that are converted to the muscle lineage by viral transduction with a MyoD (myogenic differentiation 1) transgene. Similar models have been utilised to examine calcium homeostasis in human patient cells, however, to date, there has been no detailed assessment of the cells’ calcium homeostasis, and in particular, the responses to agonists and antagonists of RYR1. Here we describe experiments conducted to assess calcium handling of the cells and examine responses to treatment with dantrolene, a drug commonly used for prophylaxis of recurrent exertional rhabdomyolysis in horses and malignant hyperthermia in humans

Objectively measured patterns of sedentary time and physical activity in young adults of the Raine study cohort

Background: To provide a detailed description of young adults' sedentary time and physical activity. Methods: 384 young women and 389 young men aged 22.1±0.6 years, all participants in the 22 year old follow-up of the Raine Study pregnancy cohort, wore Actigraph GT3X+ monitors on the hip for 24 h/day over a one-week period for at least one 'valid' day (=10 h of waking wear time). Each minute epoch was classified as sedentary, light, moderate or vigorous intensity using 100 count and Freedson cut-points. Mixed models assessed hourly and daily variation; t-tests assessed gender differences. Results: The average (mean±SD) waking wear time was 15.0±1.6 h/day, of which 61.4±10.1 % was spent sedentary, 34.6±9.1 % in light-, 3.7±5.3 % in moderate- and, 0.3±0.6 % in vigorous-intensity activity. Average time spent in moderate to vigorous activity (MVPA) was 36.2±27.5 min/day. Relative to men, women had higher sedentary time, but also higher vigorous activity time. The 'usual' bout duration of sedentary time was 11.8±4.5 min in women and 11.7±5.2 min in men. By contrast, other activities were accumulated in shorter bout durations. There was large variation by hour of the day and by day of the week in both sedentary time and MVPA. Evenings and Sundays through Wednesdays tended to be particularly sedentary and/or inactive. Conclusion: For these young adults, much of the waking day was spent sedentary and many participants were physically inactive (low levels of MVPA). We provide novel evidence on the time for which activities were performed and on the time periods when young adults were more sedentary and/or less active. With high sedentary time and low MVPA, young adults may be at risk for the life-course sequelae of these behaviours

A Simple Artificial Life Model Explains Irrational Behavior in Human Decision-Making

Although praised for their rationality, humans often make poor decisions, even in simple situations. In the repeated binary choice experiment, an individual has to choose repeatedly between the same two alternatives, where a reward is assigned to one of them with fixed probability. The optimal strategy is to perseverate with choosing the alternative with the best expected return. Whereas many species perseverate, humans tend to match the frequencies of their choices to the frequencies of the alternatives, a sub-optimal strategy known as probability matching. Our goal was to find the primary cognitive constraints under which a set of simple evolutionary rules can lead to such contrasting behaviors. We simulated the evolution of artificial populations, wherein the fitness of each animat (artificial animal) depended on its ability to predict the next element of a sequence made up of a repeating binary string of varying size. When the string was short relative to the animats’ neural capacity, they could learn it and correctly predict the next element of the sequence. When it was long, they could not learn it, turning to the next best option: to perseverate. Animats from the last generation then performed the task of predicting the next element of a non-periodical binary sequence. We found that, whereas animats with smaller neural capacity kept perseverating with the best alternative as before, animats with larger neural capacity, which had previously been able to learn the pattern of repeating strings, adopted probability matching, being outperformed by the perseverating animats. Our results demonstrate how the ability to make predictions in an environment endowed with regular patterns may lead to probability matching under less structured conditions. They point to probability matching as a likely by-product of adaptive cognitive strategies that were crucial in human evolution, but may lead to sub-optimal performances in other environments

Effectiveness of an online curriculum for medical students on genetics, genetic testing and counseling

Background: It is increasingly important that physicians have a thorough understanding of the basic science of human genetics and the ethical, legal and social implications (ELSI) associated with genetic testing and counseling. Methods: The authors developed a series of web-based courses for medical students on these topics. The course modules are interactive, emphasize clinical case studies, and can easily be incorporated into existing medical school curricula. Results: Results of a ‘real world’ effectiveness trial indicate that the courses have a statistically significant effect on knowledge, attitude, intended behavior and self-efficacy related to genetic testing (p<0.001; N varies between 163 and 596 for each course). Conclusions: The results indicate that this curriculum is an effective tool for educating medical students on the ELSI associated with genetic testing and for promoting positive changes in students' confidence, counseling attitudes and behaviors

Rare variants in SQSTM1 and VCP genes and risk of sporadic inclusion body myositis

Genetic factors have been suggested to be involved in the pathogenesis of sporadic inclusion body myositis (sIBM). SQSTM1 and VCP are two key genes associated with several neurodegenerative disorders but have yet to be thoroughly investigated in sIBM. A candidate gene analysis was conducted using whole-exome sequencing data from 181 sIBM patients, and whole-transcriptome expression analysis was performed in patients with genetic variants of interest. We identified six rare missense variants in the SQSTM1 and VCP in seven sIBM patients (4.0%). Two variants SQSTM1 p.G194R and the VCP p.R159C were significantly overrepresented in this sIBM cohort compared with controls. Five of these variants had been previously reported in patients with degenerative diseases. The mRNA levels of MHC genes were up-regulated, this elevation being more pronounced in SQSTM1 patient group. We report for the first time potentially pathogenic SQSTM1 variants and expand the spectrum of VCP variants in sIBM. These data suggests that defects in neurodegenerative pathways may confer genetic susceptibility to sIBM and reinforce the mechanistic overlap in these neurodegenerative disorders