Breakdown of antiferromagnet order in polycrystalline NiFe/NiO bilayers probed with acoustic emission

International audienc

Fatty Acids of Erythrocyte Membranes and Blood Serum in Differential Diagnosis of Inflammatory Bowel Diseases

Aim: to study fatty acid levels in erythrocyte membranes (RBC) and blood serum (BS) in patients with inflammatory bowel diseases (IBDs) to develop differential diagnostic models including fatty acids as biomarkers to distinguish between nosological entities of IBDs (ulcerative colitis — UC, Crohn's disease — CD, unclassified colitis — UCC).Materials and methods. We examined 110 patients (mean age 37,7 ± 12,1 years) with IBDs and 53 healthy patients in control group (43,3 ± 11,7 years). The IBDs group included 50 patients with UC, 41 patients with CD, 19 patients with UCC. An exacerbation of the disease was revealed in 42 patients (84 %) with UC, 34 patients with CD (82.9 %) and 11 people with UCC (57.9 %). The study of fatty acids (FA) composition of RBC membranes and BS was carried out using GC/MS system based on three Agilent 7000B quadrupoles (USA).Results. The most significant for distinguishing active UC from CD exacerbation were serum levels of elaidin (p = 0.0006); docosatetraenoic (n-6) (p = 0.004); docodienic (n-6) (p = 0.009); omega-3/omega-6 ratio (p = 0.02); docosapentaenoic (n-3) (p = 0.03); the sum of eicosapentaenoic and docosahexaenoic (p = 0.03), as well as the content of RBC lauric FA (p = 0.04) (AUC — 0.89, sensitivity — 0.91, specificity — 0.89, diagnostic accuracy — 0.91). To distinguish active UC from the same of UCC, the following serum FA were found to be significant: alpha-linolenic; saturated (pentadecanoic, palmitic, stearic, arachidic); monounsaturated (palmitoleic, oleic); omega-6 (hexadecadienic, arachidonic) (p = 0.00000011—0.03300000) (AUC — 0.995, sensitivity — 0.98, specificity — 0.96, diagnostic accuracy — 0.97). The most significant in distinguishing patients with active CD from UCC exacerbation were levels of the following FA: alpha-linolenic; palmitoleic; oleic; the amount of saturated fatty acids (SFA); total unsaturated fatty acids (UFA); stearic; monounsaturated fatty acids (MUFA) amount; SFA/UFA; SFA/PUFA (polyunsaturated fatty acids); linoleic; total PUFA n6; lauric; arachidic acid (p = 0.0000000017–0.030000000) (AUC — 0.914, sensitivity — 0.90, specificity — 0.87, diagnostic accuracy — 0.91).Conclusion. The study of FA levels in groups with different nosological forms of IBDs using complex statistical analysis, including machine learning methods, made it possible to create diagnostic models that differentiate CD, UC and UCC in the acute stage with high accuracy. The proposed approach is promising for the purposes of differential diagnosis of nosological forms of IBDs

Genetic diversity of the Aporrectodea caliginosa complex in Russia

Earthworms of the Aporrectodea caliginosa species complex are abundant in many anthropogenic and natural habitats and often predominate in earthworm communities. In Russia, there are two subspecies of the complex, A. c. caliginosa and A. c. trapezoides; Aporrectodea longa was also recently mentioned as a putative member of the complex. In this study, we made an attempt to review available data on the species complex studied based on our collection from Russia, Belarus, and Kazakhstan. The subspecies A. c. caliginosa is represented in Russia by two genetic lineages, 2 and 3, the former being the prevalent (about 73 % of the total sample). Additionally, these lineages have different distributions: while lineage 2 was found in almost all locations studied, lineage 3 was detected only in a few samples from the periphery of the region studied. The genetic diversity of lineage 2 significantly exceeded that of lineage 3, and its estimated divergence time was almost three times as high. A subset of individuals with pigmentation characteristic of A. c. caliginosa contained cox1 haplotypes of A. c. trapezoides; analysis of nuclear gene sequences confirmed this diagnosis. Thus, pigmentation intensity in this subspecies was demonstrated to vary to a significant degree. In addition, we analyzed two A. longa individuals from West Siberia and the Urals; their cox1 sequences were identical to those from the lineage 1 of this species from the north of Western Europe. These are the first reports of A. c. trapezoides and A. longa from West Siberia. On the whole, both genetic diversity and abundance was shown to decrease in the following series: A. c. caliginosa lineage 2 – A. c. caliginosa lineage 3 – A. c. trapezoides and A. longa

Structure of the capsular polysaccharide of Acinetobacter baumannii 1053 having the KL91 capsule biosynthesis gene locus

© 2014 Elsevier Ltd. All rights reserved. Acinetobacter baumannii 1053 is the type strain for the maintenance of specific bacteriophage AP22, which infects a fairly broad range of A. baumannii strains circulating in Russian clinics and hospitals. A capsular polysaccharide (CPS) was isolated from cells of strain 1053 and studied by sugar analysis along with 1D and 2D 1H and 13C NMR spectroscopy. The following structure of the linear trisaccharide repeating unit was established: →4)-β-D-ManpNAcA-(1→4)-β-D-ManpNAcA-(1→3)-α-D-FucpNAc-(1→ where ManNAcA and FucNAc indicate 2-acetamido-2-deoxymannuronic acid and 2-acetamido-2,6-dideoxygalactose, respectively. A polysaccharide having the same repeating unit but a shorter chain was isolated by the phenol-water extraction of bacterial cells. Sequencing of the CPS biosynthesis gene locus showed that A. baumannii 1053 belongs to a new group designated KL91. The gene functions assigned putatively by a comparison with available databases were in agreement with the CPS structure established

Production of the K16 capsular polysaccharide by Acinetobacter baumannii ST25 isolate D4 involves a novel glycosyltransferase encoded in the KL16 gene cluster

A new capsular polysaccharide (CPS) biosynthesis gene cluster, KL16, was found in the genome sequence of a clinical Acinetobacter baumannii ST25 isolate, D4. The variable part of KL16 contains a module of genes for synthesis of 5,7-diacetamido-3,5,7,9-tetradeoxy-l-glycero-l-manno-non-2-ulosonic acid (5,7-di-N-acetylpseudaminic acid, Pse5Ac7Ac), a gene encoding ItrA3 that initiates the CPS synthesis with d-GlcpNAc, and two glycosyltransferase (Gtr) genes. The K16 CPS was studied by sugar analysis and Smith degradation along with 1D and 2D H and C NMR spectroscopy, and shown to be built up of linear trisaccharide repeats containing d-galactose (d-Gal), N-acetyl-d-glucosamine (d-GlcNAc), and Pse5Ac7Ac. The d-Galp residue is linked to the d-GlcpNAc initiating sugar via a β-(1 → 3) linkage evidently formed by a Gtr5 variant, Gtr5, encoded in KL16. This reveals an altered or relaxed substrate specificity of this variant as the majority of Gtr5-type glycosyltransferases have previously been shown to form a β-d-Galp-(1 → 3)-d-GalpNAc linkage. The β-Psep5Ac7Ac-(2 → 4)-d-Galp linkage is predicted to be formed by the other glycosyltransferase, Gtr37, which does not match members of any known glycosyltransferase family

Pectobacterium atrosepticum exopolysaccharides: Identification, molecular structure, formation under stress and in planta conditions

© The Author 2017. Published by Oxford University Press. All rights reserved. In the present study, we identified exopolysaccharides of the harmful phytopathogenic bacterium Pectobacterium atrosepticum SCRI1043 and characterized the molecular structure of these polymers. The synthesis of the target polysaccharides was shown to be induced under starvation conditions. Moreover, intensive accumulation of exopolysaccharides occurred during the colonization by bacteria of the xylem vessels of infected plants, where microorganisms formed specific 3D "multicellular" structures-bacterial emboli. Thus, the identified polymers are likely to be involved in the adaptation and virulence of bacteria of Pectobacterium genus

ИССЛЕДОВАНИЕ УРОВНЯ ЖИРНЫХ КИСЛОТ МЕМБРАН ЭРИТРОЦИТОВ И СЫВОРОТКИ КРОВИ У ПАЦИЕНТОВ С КОЛОРЕКТАЛЬНЫМ РАКОМ Г. НОВОСИБИРСКА

The objective is to measure the level of fatty acids in erythrocyte membranes and serum of patients with colorectal cancer.Materials and methods. The study group included 100 patients with diagnosed colorectal cancer (57 men and 43 women). The control group included 24 reasonably healthy people (14 men and 10 women) matched for age and sex, without malignant cancers or manifested pathology of the internal organs.Results. Decreased levels of saturated, monounsaturated fatty acids and increased levels of polyunsaturated fatty acids (PUFAs) in erythrocyte membranes and serum (p <0.0001–0.05) were observed. The levels of omega-3 PUFAs in colorectal cancer exceeded the levels in healthy individuals both in erythrocyte membranes and in serum; for omega-6 PUFAs only a trend was observed. At the same time, the ratio of omega-6/omega-3 PUFAs in colorectal cancer was lower than in control (p <0.0001–0.002). The state of erythrocyte membranes more significantly and for more parameters characterized differences between the groups than serum. The most discriminating parameters between patients with colorectal cancer and healthy individuals both in erythrocyte membranes and serum were the levels of C20:2;11,14 (eicosadienoic), C20:3;8,11,14 (dihomo-γ-linolenic), C20:4;5,8,11,14 (eicosatetraenoic, arachidonic), C22:5;7,10,13,16,19 (docosapentaenoic), and C22:6;4,7,10,13,16,19 (docosahexaenoic) PUFAs.Цель исследования – изучить уровень жирных кислот мембран эритроцитов и сыворотки крови у пациентов с колоректальным раком.Материалы и методы. В основную группу вошли 100 пациентов с диагностированным колоректальным раком (57 мужчин и 43 женщины). Контрольная группа включала 24 практически здоровых человека (14 мужчин и 10 женщин), не имеющих злокачественных новообразований, без манифестирующей патологии внутренних органов. Группы были сопоставимы по возрасту и полу.Результаты. Выявлены сниженные уровни насыщенных, мононенасыщенных жирных кислот и повышенные – полиненасыщенных жирных кислот (ПНЖК) в мембранах эритроцитов и сыворотке крови (p <0,0001–0,05). Уровни омега-3 ПНЖК при колоректальном раке превышали таковые у здоровых лиц как в мембранах эритроцитов, так и в сыворотке крови, для омега-6 ПНЖК выявлена лишь тенденция к повышению. При этом соотношение омега-6/омега-3 ПНЖК при колоректальном раке ниже, чем в контроле (p <0,0001–0,002). Состояние мембран эритроцитов более достоверно и по большему числу показателей, чем сыворотка крови, отражает имеющиеся различия между группами. Наиболее дискриминирующими показателями между пациентами с колоректальным раком и здоровыми лицами как в мембранах эритроцитов, так и в сыворотке крови, оказались уровни C20:2;11,14 (докодиеновой), C20:3;8,11,14 (дигомо-γ-линоленовой), C20:4;5,8,11,14 (эйкозатетраеновой, арахидоновой), C22:5; 7,10,13,16,19 (докозапентаеновой) и C22:6;4,7,10,13,16,19 (докозагексаеновой) ПНЖК

Высокотеплопроводная карбидокремниевая керамика для крупногабаритной космической оптики

The paper describes the important aspects of the developed technology for manufacturing silicon-carbide substrates for optical mirrors intended for future use in space applications. It is shown that the material with the best combination of thermophysical and mechanical properties (Maksutov’s criterion) among the known analogs used for making astronomical mirrors is obtained. The characteristics of a mirror made of a lightweight mirror substrate with a diameter of 205 mm are described, compared with the parameters of most known mirrors made of silicon carbide for various space missions and as proto types. It is shown that the produced substrate is characterized by a rather low specific gravity – 16.5 kg/m2, which is comparable with the indicators of the best world analogues.Описаны важные аспекты разработанной технологии изготовления карбидокремниевых подложек для оптических зеркал, предназначенных для перспективного использования в космических приложениях. Показано, что получен материал с лучшим сочетанием теплофизических и механических свойств (критерий Максутова) среди известных аналогов, применяемых при создании астрономических зеркал. Описаны характеристики изготовленной из него облегченной подложки зеркала диаметром 205 мм, проведено сравнение с параметрами большинства известных зеркал, изготовленных из карбида кремния для различных космических миссий и в качестве опытных образцов. Показано, что изготовленная подложка характеризуется низкой удельной массой – 16,5 кг/м2, что сопоставимо с показателями лучших мировых аналогов

Ozone observations and a model of marine boundary layer photochemistry during SAGA 3

A major purpose of the third joint Soviet‐American Gases and Aerosols (SAGA 3) oceanographic cruise was to examine remote tropical marine O3 and photochemical cycles in detail. On leg 1, which took place between Hilo, Hawaii, and Pago‐Pago, American Samoa, in February and March 1990, shipboard measurements were made of O3, CO, CH4, nonmethane hydrocarbons (NMHC), NO, dimethyl sulfide (DMS), H2S, H2O2, organic peroxides, and total column O3. Postcruise analysis was performed for alkyl nitrates and a second set of nonmethane hydrocarbons. A latitudinal gradient in O3 was observed on SAGA 3, with O3 north of the intertropical convergence zone (ITCZ) at 15–20 parts per billion by volume (ppbv) and less than 12 ppbv south of the ITCZ but never ≤3 ppbv as observed on some previous equatorial Pacific cruises (Piotrowicz et al., 1986; Johnson et al., 1990). Total column O3 (230–250 Dobson units (DU)) measured from the Akademik Korolev was within 8% of the corresponding total ozone mapping spectrometer (TOMS) satellite observations and confirmed the equatorial Pacific as a low O3 region. In terms of number of constituents measured, SAGA 3 may be the most photochemically complete at‐sea experiment to date. A one‐dimensional photochemical model gives a self‐consistent picture of O3‐NO‐CO‐hydrocarbon interactions taking place during SAGA 3. At typical equatorial conditions, mean O3 is 10 ppbv with a 10–15% diurnal variation and maximum near sunrise. Measurements of O3, CO, CH4, NMHC, and H2O constrain model‐calculated OH to 9 × 105 cm−3 for 10 ppbv O3 at the equator. For DMS (300–400 parts per trillion by volume (pptv)) this OH abundance requires a sea‐to‐air flux of 6–8 × 109 cm−2 s−1, which is within the uncertainty range of the flux deduced from SAGA 3 measurements of DMS in seawater (Bates et al., this issue). The concentrations of alkyl nitrates on SAGA 3 (5–15 pptv total alkyl nitrates) were up to 6 times higher than expected from currently accepted kinetics, suggesting a largely continental source for these species. However, maxima in isopropyl nitrate and bromoform near the equator (Atlas et al., this issue) as well as for nitric oxide (Torres and Thompson, this issue) may signify photochemical and biological sources of these species

Global data on earthworm abundance, biomass, diversity and corresponding environmental properties

14 p.Earthworms are an important soil taxon as ecosystem engineers, providing a variety of crucial ecosystem functions and services. Little is known about their diversity and distribution at large spatial scales, despite the availability of considerable amounts of local-scale data. Earthworm diversity data, obtained from the primary literature or provided directly by authors, were collated with information on site locations, including coordinates, habitat cover, and soil properties. Datasets were required, at a minimum, to include abundance or biomass of earthworms at a site. Where possible, site-level species lists were included, as well as the abundance and biomass of individual species and ecological groups. This global dataset contains 10,840 sites, with 184 species, from 60 countries and all continents except Antarctica. The data were obtained from 182 published articles, published between 1973 and 2017, and 17 unpublished datasets. Amalgamating data into a single global database will assist researchers in investigating and answering a wide variety of pressing questions, for example, jointly assessing aboveground and belowground biodiversity distributions and drivers of biodiversity change