C. elegans mutant identification with a one-step whole-genome-sequencing and SNP mapping strategy.

Whole-genome sequencing (WGS) is becoming a fast and cost-effective method to pinpoint molecular lesions in mutagenized genetic model systems, such as Caenorhabditis elegans. As mutagenized strains contain a significant mutational load, it is often still necessary to map mutations to a chromosomal interval to elucidate which of the WGS-identified sequence variants is the phenotype-causing one. We describe here our experience in setting up and testing a simple strategy that incorporates a rapid SNP-based mapping step into the WGS procedure. In this strategy, a mutant retrieved from a genetic screen is crossed with a polymorphic C. elegans strain, individual F2 progeny from this cross is selected for the mutant phenotype, the progeny of these F2 animals are pooled and then whole-genome-sequenced. The density of polymorphic SNP markers is decreased in the region of the phenotype-causing sequence variant and therefore enables its identification in the WGS data. As a proof of principle, we use this strategy to identify the molecular lesion in a mutant strain that produces an excess of dopaminergic neurons. We find that the molecular lesion resides in the Pax-6/Eyeless ortholog vab-3. The strategy described here will further reduce the time between mutant isolation and identification of the molecular lesion

Microlensing of the Lensed Quasar SDSS0924+0219

We analyze V, I and H band HST images and two seasons of R-band monitoring data for the gravitationally lensed quasar SDSS0924+0219. We clearly see that image D is a point-source image of the quasar at the center of its host galaxy. We can easily track the host galaxy of the quasar close to image D because microlensing has provided a natural coronograph that suppresses the flux of the quasar image by roughly an order of magnitude. We observe low amplitude, uncorrelated variability between the four quasar images due to microlensing, but no correlated variations that could be used to measure a time delay. Monte Carlo models of the microlensing variability provide estimates of the mean stellar mass in the lens galaxy (0.02 Msun < M < 1.0 Msun), the accretion disk size (the disk temperature is 5 x 10^4 K at 3.0 x 10^14 cm < rs < 1.4 x 10^15 cm), and the black hole mass (2.0 x 10^7 Msun < MBH \eta_{0.1}^{-1/2} (L/LE)^{1/2} < 3.3 x 10^8 Msun), all at 68% confidence. The black hole mass estimate based on microlensing is consistent with an estimate of MBH = 7.3 +- 2.4 x 10^7 Msun from the MgII emission line width. If we extrapolate the best-fitting light curve models into the future, we expect the the flux of images A and B to remain relatively stable and images C and D to brighten. In particular, we estimate that image D has a roughly 12% probability of brightening by a factor of two during the next year and a 45% probability of brightening by an order of magnitude over the next decade.Comment: v.2 incorporates referee's comments and corrects two errors in the original manuscript. 28 pages, 10 figures, published in Ap

Forbidden Transitions in a Magneto-Optical Trap

We report the first observation of a non-dipole transition in an ultra-cold atomic vapor. We excite the 3P-4P electric quadrupole (E2) transition in $^{23}$Na confined in a Magneto-Optical Trap(MOT), and demonstrate its application to high-resolution spectroscopy by making the first measurement of the hyperfine structure of the 4P$_{1/2}$ level and extracting the magnetic dipole constant A $=$ 30.6 $\pm$ 0.1 MHz. We use cw OODR (Optical-Optical Double Resonance) accompanied by photoinization to probe the transition

An Evaluation of Lake Trout Suppression in Yellowstone Lake, Yellowstone National Park

Introduced lake trout (Salvelinus namaycush) threaten to extirpate native Yellowstone cutthroat trout (Oncorhynchus clarkii bouvieri) from Yellowstone Lake, Yellowstone National Park. A National Park Service gill netting program has removed nearly 400,000 lake trout from Yellowstone Lake since 1995. Lake trout population size has not been estimated; therefore, it is difficult to determine the proportion that has been removed. Our objectives were to (1) examine catch as a function of effort to determine if the suppression program has caused lake trout abundance to decline, (2) determine if certain population metrics have changed over time as a function of harvest, and (3) develop age-structured models to determine the level of mortality required to cause population growth rate to decline below 1.0 (replacement). Catch has continued to increase as a function of effort, indicating lake trout abundance is increasing. Population metrics were not clearly indicative of a response to harvest, but were comparable to North American lake trout populations where harvest has occurred. Results from an age-structured matrix model determined the rate of population growth was 1.1 given the current rate of fishing mortality and that population growth rate would be 1.3 in the absence of fishing mortality. The current rate of population growth is positive; however, it is slower than it would be in the absence of lake trout suppression. Fishing mortality needs to increase by at least 10 percent to reduce population growth rate below 1.0 in the future

Spin Excitations in a Fermi Gas of Atoms

We have experimentally investigated a spin excitation in a quantum degenerate Fermi gas of atoms. In the hydrodynamic regime the damping time of the collective excitation is used to probe the quantum behavior of the gas. At temperatures below the Fermi temperature we measure up to a factor of 2 reduction in the excitation damping time. In addition we observe a strong excitation energy dependence for this quantum statistical effect.Comment: 4 pages, 3 figure

Measurement and analysis of critical CTOA for an aluminum alloy sheet

The stable tearing behavior of thin sheets of 2024-T3 aluminum alloy was investigated for middle crack tension, M(T), and compact tension, C(T), specimens. The surface crack-tip opening angle (CTOA), applied loads, crack extension, and local displacements were measured. A critical CTOA fracture criterion was incorporated into a two-dimensional, elastic plastic finite element code and used to simulate the experimental fracture behavior. The CTOA measurements and observations of the fracture surfaces have shown that large values for surface CTOA were observed for small crack extensions (less than the sheet thickness); substantial tunneling of the crack was associated with small crack extensions; crack tunneling in the M(T) specimen was less than that observed in the C(T) configuration; for larger crack extensions, the measured CTOA values were determined to be approximately 6 degrees for both the M(T) and C(T) configuration; and for larger crack extensions, crack tunneling remained constant. The two-dimensional finite element predictions of fracture behavior assumed a constant critical CTOA value of 6 degrees and accounted for local crack tip constraint with a plane strain core of elements ahead of the crack tip. The plane strain core extended 5 mm above the crack plane. The simulations were within +/- 4 percent of the maximum applied load for the C(T) tests within 2 percent for the M(T) tests

Transverse Fresnel-Fizeau drag effects in strongly dispersive media

A light beam normally incident upon an uniformly moving dielectric medium is in general subject to bendings due to a transverse Fresnel-Fizeau light drag effect. In conventional dielectrics, the magnitude of this bending effect is very small and hard to detect. Yet, it can be dramatically enhanced in strongly dispersive media where slow group velocities in the m/s range have been recently observed taking advantage of the electromagnetically induced transparency (EIT) effect. In addition to the usual downstream drag that takes place for positive group velocities, we predict a significant anomalous upstream drag to occur for small and negative group velocities. Furthermore, for sufficiently fast speeds of the medium, higher order dispersion terms are found to play an important role and to be responsible for peculiar effects such as light propagation along curved paths and the restoration of the spatial coherence of an incident noisy beam. The physics underlying this new class of slow-light effects is thoroughly discussed