313 research outputs found
Virtual reality for the analysis and visualization of scientific numerical models
The complexity of the data generated by (magneto)-hydrodynamic (HD/MHD)
simulations requires advanced tools for their analysis and visualization. The
dramatic improvements in virtual reality (VR) technologies have inspired us to
seek the long-term goal of creating VR tools for scientific model analysis and
visualization that would allow researchers to study and perform data analysis
on their models within an immersive environment. Here, we report the results
obtained at INAF-Osservatorio Astronomico di Palermo in the development of
these tools, which would allow for the exploration of 3D models interactively,
resulting in highly detailed analysis that cannot be performed with traditional
data visualization and analysis platforms. Additionally, these VR-based tools
offer the ability to produce high-impact VR content for efficient audience
engagement and awareness.Comment: 9 pages, 5 figures, proceedings of the conference "Virtual and
augmented reality for public outreach". Accepted for publication on Mem. SAI
Active shape correction of a thin glass/plastic X-ray mirror
Optics for future X-ray telescopes will be characterized by very large
aperture and focal length, and will be made of lightweight materials like glass
or plastic in order to keep the total mass within acceptable limits. Optics
based on thin slumped glass foils are currently in use in the NuSTAR telescope
and are being developed at various institutes like INAF/OAB, aiming at
improving the angular resolution to a few arcsec HEW. Another possibility would
be the use of thin plastic foils, being developed at SAO and the Palermo
University. Even if relevant progresses in the achieved angular resolution were
recently made, a viable possibility to further improve the mirror figure would
be the application of piezoelectric actuators onto the non-optical side of the
mirrors. In fact, thin mirrors are prone to deform, so they require a careful
integration to avoid deformations and even correct forming errors. This however
offers the possibility to actively correct the residual deformation. Even if
other groups are already at work on this idea, we are pursuing the concept of
active integration of thin glass or plastic foils with piezoelectric patches,
fed by voltages driven by the feedback provided by X-rays, in intra-focal setup
at the XACT facility at INAF/OAPA. In this work, we show the preliminary
simulations and the first steps taken in this project
Upper limb motor improvement in chronic stroke after combining botulinum toxin A injection and multi-joints robot-assisted therapy: A case report
Spasticity is one of the major complications after stroke. Botulinum toxin type A (BoNT-A) injection is commonly used to manage focal spasticity. However, it is uncertain whether BoNT-A can improve activities of daily living function of paretic arm. The recovery of functions of the affected arm is also the aim of robotic upper limb (UL) therapy. The motorized exoskeleton assists the patient in a large 3D work environment by promoting movement for the UL (shoulder, elbow, wrist, hand). The combination of the BoNT-A injection and the robotic therapy might enhance functional recovery after stroke.We reported the case of a chronic stroke patient in which the injection of BoNT-A was combined with multi-joint exoskeleton training. The patient showed improvement in the motor control of the UL, supporting the feasibility of this approach
NaNet: a Low-Latency, Real-Time, Multi-Standard Network Interface Card with GPUDirect Features
While the GPGPU paradigm is widely recognized as an effective approach to
high performance computing, its adoption in low-latency, real-time systems is
still in its early stages.
Although GPUs typically show deterministic behaviour in terms of latency in
executing computational kernels as soon as data is available in their internal
memories, assessment of real-time features of a standard GPGPU system needs
careful characterization of all subsystems along data stream path.
The networking subsystem results in being the most critical one in terms of
absolute value and fluctuations of its response latency.
Our envisioned solution to this issue is NaNet, a FPGA-based PCIe Network
Interface Card (NIC) design featuring a configurable and extensible set of
network channels with direct access through GPUDirect to NVIDIA Fermi/Kepler
GPU memories.
NaNet design currently supports both standard - GbE (1000BASE-T) and 10GbE
(10Base-R) - and custom - 34~Gbps APElink and 2.5~Gbps deterministic latency
KM3link - channels, but its modularity allows for a straightforward inclusion
of other link technologies.
To avoid host OS intervention on data stream and remove a possible source of
jitter, the design includes a network/transport layer offload module with
cycle-accurate, upper-bound latency, supporting UDP, KM3link Time Division
Multiplexing and APElink protocols.
After NaNet architecture description and its latency/bandwidth
characterization for all supported links, two real world use cases will be
presented: the GPU-based low level trigger for the RICH detector in the NA62
experiment at CERN and the on-/off-shore data link for KM3 underwater neutrino
telescope
GPU-based Real-time Triggering in the NA62 Experiment
Over the last few years the GPGPU (General-Purpose computing on Graphics
Processing Units) paradigm represented a remarkable development in the world of
computing. Computing for High-Energy Physics is no exception: several works
have demonstrated the effectiveness of the integration of GPU-based systems in
high level trigger of different experiments. On the other hand the use of GPUs
in the low level trigger systems, characterized by stringent real-time
constraints, such as tight time budget and high throughput, poses several
challenges. In this paper we focus on the low level trigger in the CERN NA62
experiment, investigating the use of real-time computing on GPUs in this
synchronous system. Our approach aimed at harvesting the GPU computing power to
build in real-time refined physics-related trigger primitives for the RICH
detector, as the the knowledge of Cerenkov rings parameters allows to build
stringent conditions for data selection at trigger level. Latencies of all
components of the trigger chain have been analyzed, pointing out that
networking is the most critical one. To keep the latency of data transfer task
under control, we devised NaNet, an FPGA-based PCIe Network Interface Card
(NIC) with GPUDirect capabilities. For the processing task, we developed
specific multiple ring trigger algorithms to leverage the parallel architecture
of GPUs and increase the processing throughput to keep up with the high event
rate. Results obtained during the first months of 2016 NA62 run are presented
and discussed
Distinctive features of tumor-infiltrating gd T lymphocytes in human colorectal cancer
gd T cells usually infiltrate many different types of cancer, but it is unclear whether they inhibit or promote tumor progression. Moreover, properties of tumor-infiltrating gd T cells and those in the corresponding normal tissue remain largely unknown. Here we have studied features of gd T cells in colorectal cancer, normal colon tissue and peripheral blood, and correlated their levels with clinicopathologic hallmarks. Flow cytometry and transcriptome analyses showed that the tumor comprised a highly variable rate of TILs (5-90%) and 4%gd T cells on average, with the majority expressing Vd1. Most Vd1 and Vd2 T cells showed a predominant effector memory phenotype and had reduced production of IFN-g which was likely due to yet unidentified inhibitory molecules present in cancer stem cell secretome. Transcriptome analyses revealed that patients containing abundant gd T cells had significantly longer 5-year disease free survival rate, suggesting their efficacy in controlling tumor at very early stage
Changes in Motor, Cognitive, and Behavioral Symptoms in Parkinson's Disease and Mild Cognitive Impairment During the COVID-19 Lockdown
Objective: The effects of the COVID-19 lockdown on subjects with prodromal phases of dementia are unknown. The aim of this study was to evaluate the motor, cognitive, and behavioral changes during the COVID-19 lockdown in Italy in patients with Parkinson's disease (PD) with and without mild cognitive impairment (PD-MCI and PD-NC) and in patients with MCI not associated with PD (MCInoPD). Methods: A total of 34 patients with PD-NC, 31 PD-MCI, and 31 MCInoPD and their caregivers were interviewed 10 weeks after the COVID-19 lockdown in Italy, and changes in cognitive, behavioral, and motor symptoms were examined. Modified standardized scales, including the Neuropsychiatric Inventory (NPI) and the Movement Disorder Society, Unified Parkinson's Disease Rating Scale (MDS-UPDRS) Parts I and II, were administered. Multivariate logistic regression was used to evaluate associated covariates by comparing PD-NC vs. PD-MCI and MCInoPD vs. PD-MCI. Results: All groups showed a worsening of cognitive (39.6%), pre-existing (37.5%), and new (26%) behavioral symptoms, and motor symptoms (35.4%) during the COVID-19 lockdown, resulting in an increased caregiver burden in 26% of cases. After multivariate analysis, PD-MCI was significantly and positively associated with the IADL lost during quarantine (OR 3.9, CI 1.61–9.58), when compared to PD-NC. In the analysis of MCInoPD vs. PD-MCI, the latter showed a statistically significant worsening of motor symptoms than MCInoPD (OR 7.4, CI 1.09–45.44). Regarding NPI items, nighttime behaviors statistically differed in MCInoPD vs. PD-MCI (16.1% vs. 48.4%, p = 0.007). MDS-UPDRS parts I and II revealed that PD-MCI showed a significantly higher frequency of cognitive impairment (p = 0.034), fatigue (p = 0.036), and speech (p = 0.013) than PD-NC. On the contrary, PD-MCI showed significantly higher frequencies in several MDS-UPDRS items compared to MCInoPD, particularly regarding pain (p = 0.001), turning in bed (p = 0.006), getting out of bed (p = 0.001), and walking and balance (p = 0.003). Conclusion: The COVID-19 quarantine is associated with the worsening of cognitive, behavioral, and motor symptoms in subjects with PD and MCI, particularly in PD-MCI. There is a need to implement specific strategies to contain the effects of quarantine in patients with PD and cognitive impairment and their caregivers
Multiple Sclerosis in the Mount Etna Region: Possible Role of Volcanogenic Trace Elements
Background: Trace elements have been hypothesised to be involved in the pathogenesis of Multiple Sclerosis and volcanic
degassing is the major natural sources of trace elements. Both incidence of Multiple Sclerosis in Catania and volcanic activity
of Mount Etna have been significantly increased during the last 30 years. Due to prevailing trade winds direction, volcanic
gases from Etna summit craters are mostly blown towards the eastern and southern sectors of the volcano.
Objective: To evaluate the possible association between Multiple Sclerosis and exposure to volcanogenic trace elements.
Methods: We evaluated prevalence and incidence of Multiple Sclerosis in four communities (47,234 inhabitants) located in
the eastern flank and in two communities (52,210 inhabitants) located in the western flank of Mount Etna, respectively the
most and least exposed area to crater gas emissions.
Results: A higher prevalence was found in the population of the eastern flank compared to the population of the western
one (137.6/100,000 versus 94.3/100,000; p-value 0.04). We found a borderline significantly higher incidence risk during the
incidence study period (1980–2009) in the population of the eastern flank 4.6/100,000 (95% CI 3.1–5.9), compared with the
western population 3.2/100,000 (95% CI 2.4–4.2) with a RR of 1.41 (95% CI 0.97–2.05; p-value 0.06). Incidence risks have
increased over the time in both populations reaching a peak of 6.4/100,000 in the eastern flank and of 4.4/100.000 in the
western flank during 2000–2009.
Conclusion: We found a higher prevalence and incidence of Multiple Sclerosis among populations living in the eastern flank
of Mount Etna. According to our data a possible role of TE cannot be ruled out as possible co-factor in the MS pathogenesis.
However larger epidemiological study are needed to confirm this hypothesis.Publishede742596A. Monitoraggio ambientale, sicurezza e territorioJCR Journalope
Improved Bone Regeneration Using Biodegradable Polybutylene Succinate Artificial Scaffold in a Rabbit Model
The treatment of extensive bone loss represents a great challenge for orthopaedic and reconstructive surgery. Most of the time, those treatments consist of multiple-stage surgeries over a prolonged period, pose significant infectious risks and carry the possibility of rejection. In this study, we investigated if the use of a polybutylene succinate (PBS) micro-fibrillar scaffold may improve bone regeneration in these procedures. In an in vivo rabbit model, the healing of two calvarial bone defects was studied. One defect was left to heal spontaneously while the other was treated with a PBS scaffold. Computed tomography (CT) scans, histological and immunohistochemical analyses were performed at 4, 12 and 24 weeks. CT examination showed a significantly larger area of mineralised tissue in the treated defect. Histological examination confirmed a greater presence of active osteoblasts and mineralised tissue in the scaffold-treated defect, with no evidence of inflammatory infiltrates around it. Immunohistochemical analysis was positive for CD56 at the transition point between healthy bone and the fracture zone. This study demonstrates that the use of a PBS microfibrillar scaffold in critical bone defects on a rabbit model is a potentially effective technique to improve bone regeneration
Darunavir exhibits a potent activity as boosted PI in subjects on a salvage antiretroviral regimen
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