Time integration and steady-state continuation for 2d lubrication equations

Lubrication equations allow to describe many structurin processes of thin liquid films. We develop and apply numerical tools suitable for their analysis employing a dynamical systems approach. In particular, we present a time integration algorithm based on exponential propagation and an algorithm for steady-state continuation. In both algorithms a Cayley transform is employed to overcome numerical problems resulting from scale separation in space and time. An adaptive time-step allows to study the dynamics close to hetero- or homoclinic connections. The developed framework is employed on the one hand to analyse different phases of the dewetting of a liquid film on a horizontal homogeneous substrate. On the other hand, we consider the depinning of drops pinned by a wettability defect. Time-stepping and path-following are used in both cases to analyse steady-state solutions and their bifurcations as well as dynamic processes on short and long time-scales. Both examples are treated for two- and three-dimensional physical settings and prove that the developed algorithms are reliable and efficient for 1d and 2d lubrication equations, respectively.Comment: 33 pages, 16 figure

GEOFLOW: simulation of convection in a spherical shell under central force field

Time-dependent dynamical simulations related to convective motion in a spherical gap under a central force field due to the dielectrophoretic effect are discussed. This work is part of the preparation of the GEOFLOW-experiment which is planned to run in a microgravity environment. The goal of this experiment is the simulation of large-scale convective motion in a geophysical or astrophysical framework. This problem is new because of, on the one hand, the nature of the force field (dielectrophoretic effect) and, on another hand, the high degree of symmetries of the system, e.g. the top-bottom reflection. Thus, the validation of this simulation with well-known results is not possible. The questions concerning the influence of the dielectrophoretic force and the possibility to reproduce the theoretically expected motions in the astrophysical framework, are open. In the first part, we study the system in terrestrial conditions: the unidirectional Earth's force is superimposed on the central dielectrophoretic force field to compare with the laboratory experiments during the development of the equipment. In the second part, the GEOFLOW-experiment simulations in weightless conditions are compared with theoretical studies in the astrophysical framework's, in the first instance a fluid under a self-gravitating force field. We present complex time-dependent dynamics, where the dielectrophoretic force field causes significant differences in the flow compared to the case that does not involve this force field

Depinning of three-dimensional drops from wettability defects

Substrate defects crucially influence the onset of sliding drop motion under lateral driving. A finite force is necessary to overcome the pinning influence even of microscale heterogeneities. The depinning dynamics of three-dimensional drops is studied for hydrophilic and hydrophobic wettability defects using a long-wave evolution equation for the film thickness profile. It is found that the nature of the depinning transition explains the experimentally observed stick-slip motion.Comment: 6 pages, 9 figures, submitted to ep

Development and Evaluation of qPCR Detection Method and Zn-MgO/Alginate Active Packaging for Controlling Listeria monocytogenes Contamination in Cold-Smoked Salmon

To answer to food industry requests to monitor the presence of L. monocytogenes in cold-smoked salmon samples and to extend their shelf-life, a qPCR protocol for the detection of L. monocytogenes, and an antibacterial active packaging reinforced with zinc magnesium oxide nanoparticles (Zn-MgO NPs) were developed. The qPCR allowed the sensitive and easy detection of L. monocytogenes in naturally contaminated samples, with specificity in full agreement with the standard methods. The halo diusion study indicated a high antibacterial eciency of 1 mg/mL Zn-MgO NPs against L. monocytogenes, while the flow cytometry showed only moderate cytotoxicity of the nanoparticles towards mammalian cells at a concentration above 1 mg/mL. Thus, the novel active packaging was developed by using 1 mg/mL of Zn-MgO NPs to reinforce the alginate film. Cold-smoked salmon samples inoculated with L. monocytogenes and air-packed with the Zn-MgO NPs-alginate nanobiocomposite film showed no bacterial proliferation at 4 C during 4 days. In the same condition, L. monocytogenes growth in control contaminated samples packed with alginate film alone. Our results suggest that Zn-MgO nanoparticles can extend the shelf-life of cold-smoked salmon samples

Unsupervised activity recognition for autonomous water drones

We propose an automatic system aimed at discovering relevant activities for aquatic drones employed in water monitoring applications. The methodology exploits unsupervised time series segmentation to pursue two main goals: i) to support on-line decision making of drones and operators, ii) to support off-line analysis of large datasets collected by drones. The main novelty of our approach consists of its unsupervised nature, which enables to analyze unlabeled data. We investigate different variants of the proposed approach and validate them using an annotated dataset having labels for activity \u201cupstream/downstream navigation\u201d. Obtained results are encouraging in terms of clustering purity and silhouette which reach values greater than 0.94 and 0.20, respectively, in the best models

Robust area coverage with connectivity maintenance

Robot swarms herald the ability to solve complex tasks using a large collection of simple devices. However, engineering a robotic swarm is far from trivial, with a major hurdle being the definition of the control laws leading to the desired globally coordinated behavior. Communication is a key element for coordination and it is considered one of the current most important challenges for swarm robotics. In this paper, we study the problem of maintaining robust swarm connectivity while performing a coverage task based on the Voronoi tessellation of an area of interest. We implement our methodology in a team of eight Khepera IV robots. With the assumptions that robots have a limited sensing and communication range - and cannot rely on centralized processing - we propose a tri-objective control law that outperforms other simpler strategies (e.g. a potential-based coverage) in terms of network connectivity, robustness to failure, and area coverage

18S rRNA processing requires base pairings of snR30 H/ACA snoRNA to eukaryote-specific 18S sequences

The H/ACA RNAs represent an abundant, evolutionarily conserved and functionally diverse class of non-coding RNAs. Many H/ACA RNAs direct pseudouridylation of rRNAs and snRNAs, while members of the rapidly growing group of ‘orphan' H/ACA RNAs participate in pre-rRNA processing, telomere synthesis and probably, in other nuclear processes. The yeast snR30 ‘orphan' H/ACA snoRNA has long been known to function in the nucleolytic processing of 18S rRNA, but its molecular role remained unknown. Here, we provide biochemical and genetic evidence demonstrating that during pre-rRNA processing, two evolutionarily conserved sequence elements in the 3′-hairpin of snR30 base-pair with short pre-rRNA sequences located in the eukaryote-specific internal region of 18S rRNA. The newly discovered snR30-18S base-pairing interactions are essential for 18S rRNA production and they constitute a complex snoRNA target RNA transient structure that is novel to H/ACA RNAs. We also demonstrate that besides the 18S recognition motifs, the distal part of the 3′-hairpin of snR30 contains an additional snoRNA element that is essential for 18S rRNA processing and that functions most likely as a snoRNP protein-binding site

Sanidade, transmissão via semente e patogenicidade de fungos em sementes de Cedrela fissilis procedentes da Região Sul do Brasil.

Pesquisas relacionadas à patologia de sementes de espécies florestais nativas, especialmente aquelas mais aprofundadas, são escassas. Assim, o objetivo deste estudo foi avaliar a sanidade das sementes de cedro através de dois métodos de detecção, avaliar a transmissão de fungos associados às sementes para as plântulas e avaliar a patogenicidade de fungos associados às sementes e transmitidos para as plântulas. Para tanto, sementes de seis procedências, dentre os estados do Rio Grande do Sul, Santa Catarina e Paraná, foram utilizadas. Estas foram submetidas a testes de sanidade, pelos métodos do papel-filtro e batata-dextroseágar (BDA), a teste de transmissão via sementes para as plântulas e a teste de patogenicidade de isolados de Rhizoctonia sp., patógeno escolhido por ser o mais frequente nos testes de sanidade e transmitido via semente. Os fungos encontrados em ambos os testes foram: Pestalotia sp., Rhizoctonia sp., Penicillium sp., Phomopsis sp., Rhizopus sp., Aspergillus sp. e Fusarium sp. Ambos os métodos podem ser utilizados para teste de sanidade em sementes de cedro. Os fungos transmitidos via semente para plântula foram Fusarium sp. e Rhizoctonia sp., sendo que, estes causaram danos nas raízes e posterior tombamento. Foi identificado um isolado de Rhizoctonia sp. patogênico para plântulas de cedro, causando os mesmos sintomas relatados no teste de transmissão

Detection of Listeria monocytogenes in foods with a textile organic electrochemical transistor biosensor

Abstract: Foods contaminated by pathogens are responsible for foodborne diseases which have socioeconomic impacts. Many approaches have been extensively investigated to obtain specific and sensitive methods to detect pathogens in food, but they are often not easy to perform and require trained personnel. This work aims to propose a textile organic electrochemical transistor-based (OECT) biosensor to detect L. monocytogenes in food samples. The analyses were performed with culture-based methods, Listeria Precis™ method, PCR, and our textile OECT biosensor which used poly(3,4-ethylenedioxythiophene) (PEDOT):polystyrene sulfonate (PSS) (PEDOT:PSS) for doping the organic channel. Atomic force microscopy (AFM) was used to obtain topographic maps of the gold gate. The electrochemical activity on gate electrodes was measured and related to the concentration of DNA extracted from samples and hybridized to the specific capture probe immobilized onto the gold surface of the gate. This assay reached a limit of detection of 1.05 ng/μL, corresponding to 0.56 pM of L. monocytogenes ATCC 7644, and allowed the specific and rapid detection of L. monocytogenes in the analyzed samples. Keypoints: • Textile organic electrochemical transistors functionalized with a specific DNA probe • AFM topographic and surface potential maps of a functionalized gold gate surface • Comparison between the Listeria monocytogenes Precis™ method and an OECT biosenso

HD 304373, the second case of 1O/2O double-mode Cepheid in the Galaxy

We report on the discovery of the second case of a galactic Cepheid, ASAS112843-5925.7=HD 304373, pulsating in the the first (1O) and second (2O) radial overtones. The ratio between the periods (0.8058), the short value of the 1O period (0.922405 d) and the shape of the 1O light curve makes HD 304373 very similar to the 1O/2O Cepheids in the Magellanic Clouds. The implications of a so close similarity between a galactic 1O/2O pulsator and LMC ones are discussed in terms of importance of the metallicity effects.Comment: 4 pages (in A&A style), 3 eps figures. Accepted for A&A Letter