Quality assurance for the ALICE Monte Carlo procedure

We implement the already existing macro,$ALICE_ROOT/STEER /CheckESD.C that is ran after reconstruction to compute the physics efficiency, as a task that will run on proof framework like CAF. The task was implemented in a C++ class called AliAnalysisTaskCheckESD and it inherits from AliAnalysisTaskSE base class. The function of AliAnalysisTaskCheckESD is to compute the ratio of the number of reconstructed particles to the number of particle generated by the Monte Carlo generator.The class AliAnalysisTaskCheckESD was successfully implemented. It was used during the production for first physics and permitted to discover several problems (missing track in the MUON arm reconstruction, low efficiency in the PHOS detector etc.). The code is committed to the SVN repository and will become standard tool for quality assurance.Comment: 7 pages, 7 figure

Taylor models and floating-point arithmetic: proof that arithmetic operations are validated in COSY

The goal of this paper is to prove that the implementation of Taylor models in COSY, based on floating-point arithmetic, computes results satisfyin- g the «containment property», i.e. guaranteed results. First, Taylor models are defined and their implementation in the COSY software by Makino and Berz is detailed. Afterwards IEEE-754 floating-point arithmetic is introduced. Then the core of this paper is given: the algorithms implemented in COSY for multiplying a Taylor model by a scalar, for adding or multiplying two Taylor models are given and are proven to return Taylor models satisfying the containment property.L'objectif de ce travail est de démontrer que l'implantation des modèles de Taylor, telle qu'elle est réalisée dans le logiciel COSY, calcule des résultats qui sont garantis, c'est à dire qu''ils satisfont la propriété d'inclusion.Tout d'abord, les modèles de Taylor sont définis et leur implantation par Makino et Berz dans le logiciel COSY est détaillée. Ensuite l'arithmétique flottante, telle qu'elle est spécifiée par la norme IEEE-754, est présentée. Enfin on arrive au cœur du sujet : les algorithmes implantés dans COSY pour la multiplication d'un modèle de Taylor par un scalaire et pour la somme et le produit de deux modèles de Taylor sont donnés; il est démontré que ces algorithmes retournent de s modèles de Taylor qui satisfont la propriété d'inclusion

The Identification Of Morphometric Characteristics And Fattenning Of Mud Crabs (Scylla spp.) In Para Island, Tatoareng District, Sangihe Islands Regency, North Sulawesi Province

The purpose of this study was to identify the morphometric characters of mangrove crabs Scylla spp. and to grow them on the island of Para Sangihe Islands Regency, North Sulawesi Province. There were 2 types of crabs found during crab’s collection. However, the most abundant one was Scylla serrata while the olivacea is only one tail. The results of this study indicate that mangrove crabs that were kept for 2 weeks feed on trash fish three times a day experience growth. Based on the results of the study, it can be concluded that: the type of crab found on Pulau Para, Tatoareng District, Sangihe Islands Regency, North Sulawesi Province were mostly S. serrata (34 tails) and one tail of S. olivacea. The fattening of mangrove crabs showed results on the body weight and carapace length.Further research on mangrove crabs needs to be done on different aspects such as preferable food and time of the abundancy.Keywords: Crab, Scylla spp., identification, fattening. ABSTRAK       Tujuan dari penelitian ini adalah untuk mengidentifikasi karakter morfometrik kepiting bakau Scylla spp dan cara penggemukannya di Pulau Para Kabupaten Kepulauan Sangihe Provinsi Sulawesi Utara. Dua jenis kepiting bakau ditemukan saat pengumpulan data, namun yang ditemukan paling banyak adalah Scylla serrata, sedangkan S. olivacea hanya 1 ekor saja.Hasil penelitian ini menunjukan bahwa kepiting bakau yang dipelihara selama 2 minggu dengan diberi pakan ikan rucah sebanyak tiga kali sehari mengalami pertumbuhan. Berdasarkan hasil penelitian dapat disimpulkan bahwa: jenis kepiting yang ditemukan di Pulau Para Kecamatan Tatoareng Kabupaten Kepulauan Sangihe Provinsi Sulawesi Utara adalah Scylla serrata (34 ekor) dan S. olivacea (1 ekor). Penggemukan kepiting bakau dengan pakan ikan rucah tiga kali sehari menunjukan adanya pertumbuhan berat badan dan panjang lebar karapas.     Penelitian lanjutan tentang kepiting bakau perlu dilakukan untuk melihat berbagai aspek seperti makanan kesukaan dan waktu kelimpahanya.Kata kunci : Kepiting, Scylla spp, identifikasi, penggemukan

Optogenetic Peripheral Nerve Immunogenicity

Optogenetic technologies have been the subject of great excitement within the scientific community for their ability to demystify complex neurophysiological pathways in the central (CNS) and peripheral nervous systems (PNS). The excitement surrounding optogenetics has also extended to the clinic with a trial for ChR2 in the treatment of retinitis pigmentosa currently underway and additional trials anticipated for the near future. In this work, we identify the cause of loss-of-expression in response to transdermal illumination of an optogenetically active peroneal nerve following an anterior compartment (AC) injection of AAV6-hSyn-ChR2(H134R) with and without a fluorescent reporter. Using Sprague Dawley Rag2−/− rats and appropriate controls, we discover optogenetic loss-of-expression is chiefly elicited by ChR2-mediated immunogenicity in the spinal cord, resulting in both CNS motor neuron death and ipsilateral muscle atrophy in both low and high Adeno-Associated Virus (AAV) dosages. We further employ pharmacological immunosuppression using a slow-release tacrolimus pellet to demonstrate sustained transdermal optogenetic expression up to 12 weeks. These results suggest that all dosages of AAV-mediated optogenetic expression within the PNS may be unsafe. Clinical optogenetics for both PNS and CNS applications should take extreme caution when employing opsins to treat disease and may require concurrent immunosuppression. Future work in optogenetics should focus on designing opsins with lesser immunogenicity.MIT Media Lab Consortiu

Infiltration from surface and buried point sources: The average wetting water content

The assumption in analytical solutions for flow from surface and buried point sources of an average water content, (θ) over bar, behind the wetting front is examined. Some recent work has shown that this assumption fitted some field data well. Here we calculated (θ) over bar using a steady state solution based on the work by Raats [1971] and an exponential dependence of the diffusivity upon the water content. This is compared with a constant value of (θ) over bar calculated from an assumption of a hydraulic conductivity at the wetting front of 1 mm day(-1) and the water content at saturation. This comparison was made for a wide range of soils. The constant (θ) over bar generally underestimated (θ) over bar at small wetted radii and overestimated (θ) over bar at large radii. The crossover point between under and overestimation changed with both soil properties and flow rate. The largest variance occurred for coarser texture soils at low-flow rates. At high-flow rates in finer-textured soils the use of a constant (θ) over bar results in underestimation of the time for the wetting front to reach a particular radius. The value of (θ) over bar is related to the time at which the wetting front reaches a given radius. In coarse-textured soils the use of a constant value of (θ) over bar can result in an error of the time when the wetting front reaches a particular radius, as large as 80% at low-flow rates and large radii

Solar Neutrinos: What We Have Learned

The four operating solar neutrino experiments confirm the hypothesis that the energy source for solar luminosity is hydrogen fusion. However, the measured rate for each of the four solar neutrino experiments differs significantly (by factors of 2.0 to 3.5) from the corresponding theoretical prediction that is based upon the standard solar model and the simplest version of the standard electroweak theory. If standard electroweak theory is correct, the energy spectrum for \b8 neutrinos created in the solar interior must be the same (to one part in $10^5$) as the known laboratory \b8 neutrino energy spectrum. Direct comparison of the chlorine and the Kamiokande experiments, both sensitive to \b8 neutrinos, suggests that the discrepancy between theory and observations depends upon neutrino energy, in conflict with standard expectations. Monte Carlo studies with 1000 implementations of the standard solar model confirm that the chlorine and the Kamiokande experiments cannot be reconciled unless new weak interaction physics changes the shape of the \b8 neutrino energy spectrum. The results of the two gallium solar neutrino experiments strengthen the conclusion that new physics is required and help determine a relatively small allowed region for the MSW neutrino parameters.Comment: LaTeX file, 19 pages. For hardcopy with figures contact [email protected]. Institute for Advanced Study number AST 93/6

Multiplicity dependence of jet-like two-particle correlations in p-Pb collisions at sNN\sqrt{s_{NN}} = 5.02 TeV

Two-particle angular correlations between unidentified charged trigger and associated particles are measured by the ALICE detector in p-Pb collisions at a nucleon-nucleon centre-of-mass energy of 5.02 TeV. The transverse-momentum range 0.7 $< p_{\rm{T}, assoc} < p_{\rm{T}, trig} <$ 5.0 GeV/$c$ is examined, to include correlations induced by jets originating from low momen\-tum-transfer scatterings (minijets). The correlations expressed as associated yield per trigger particle are obtained in the pseudorapidity range $|\eta|<0.9$. The near-side long-range pseudorapidity correlations observed in high-multiplicity p-Pb collisions are subtracted from both near-side short-range and away-side correlations in order to remove the non-jet-like components. The yields in the jet-like peaks are found to be invariant with event multiplicity with the exception of events with low multiplicity. This invariance is consistent with the particles being produced via the incoherent fragmentation of multiple parton--parton scatterings, while the yield related to the previously observed ridge structures is not jet-related. The number of uncorrelated sources of particle production is found to increase linearly with multiplicity, suggesting no saturation of the number of multi-parton interactions even in the highest multiplicity p-Pb collisions. Further, the number scales in the intermediate multiplicity region with the number of binary nucleon-nucleon collisions estimated with a Glauber Monte-Carlo simulation.Comment: 23 pages, 6 captioned figures, 1 table, authors from page 17, published version, figures at http://aliceinfo.cern.ch/ArtSubmission/node/161

Multi-particle azimuthal correlations in p-Pb and Pb-Pb collisions at the CERN Large Hadron Collider

Measurements of multi-particle azimuthal correlations (cumulants) for charged particles in p-Pb and Pb-Pb collisions are presented. They help address the question of whether there is evidence for global, flow-like, azimuthal correlations in the p-Pb system. Comparisons are made to measurements from the larger Pb-Pb system, where such evidence is established. In particular, the second harmonic two-particle cumulants are found to decrease with multiplicity, characteristic of a dominance of few-particle correlations in p-Pb collisions. However, when a $|\Delta \eta|$ gap is placed to suppress such correlations, the two-particle cumulants begin to rise at high-multiplicity, indicating the presence of global azimuthal correlations. The Pb-Pb values are higher than the p-Pb values at similar multiplicities. In both systems, the second harmonic four-particle cumulants exhibit a transition from positive to negative values when the multiplicity increases. The negative values allow for a measurement of $v_{2}\{4\}$ to be made, which is found to be higher in Pb-Pb collisions at similar multiplicities. The second harmonic six-particle cumulants are also found to be higher in Pb-Pb collisions. In Pb-Pb collisions, we generally find $v_{2}\{4\} \simeq v_{2}\{6\}\neq 0$ which is indicative of a Bessel-Gaussian function for the $v_{2}$ distribution. For very high-multiplicity Pb-Pb collisions, we observe that the four- and six-particle cumulants become consistent with 0. Finally, third harmonic two-particle cumulants in p-Pb and Pb-Pb are measured. These are found to be similar for overlapping multiplicities, when a $|\Delta\eta| > 1.4$ gap is placed.Comment: 25 pages, 11 captioned figures, 3 tables, authors from page 20, published version, figures at http://aliceinfo.cern.ch/ArtSubmission/node/87