Aluminum arsenide cleaved-edge overgrown quantum wires

We report conductance measurements in quantum wires made of aluminum arsenide, a heavy-mass, multi-valley one-dimensional (1D) system. Zero-bias conductance steps are observed as the electron density in the wire is lowered, with additional steps observable upon applying a finite dc bias. We attribute these steps to depopulation of successive 1D subbands. The quantum conductance is substantially reduced with respect to the anticipated value for a spin- and valley-degenerate 1D system. This reduction is consistent with disorder-induced, intra-wire backscattering which suppresses the transmission of 1D modes. Calculations are presented to demonstrate the role of strain in the 1D states of this cleaved-edge structure.Comment: Submitted to Applied Physics Letter

ProteinHistorian: Tools for the Comparative Analysis of Eukaryote Protein Origin

The evolutionary history of a protein reflects the functional history of its ancestors. Recent phylogenetic studies identified distinct evolutionary signatures that characterize proteins involved in cancer, Mendelian disease, and different ontogenic stages. Despite the potential to yield insight into the cellular functions and interactions of proteins, such comparative phylogenetic analyses are rarely performed, because they require custom algorithms. We developed ProteinHistorian to make tools for performing analyses of protein origins widely available. Given a list of proteins of interest, ProteinHistorian estimates the phylogenetic age of each protein, quantifies enrichment for proteins of specific ages, and compares variation in protein age with other protein attributes. ProteinHistorian allows flexibility in the definition of protein age by including several algorithms for estimating ages from different databases of evolutionary relationships. We illustrate the use of ProteinHistorian with three example analyses. First, we demonstrate that proteins with high expression in human, compared to chimpanzee and rhesus macaque, are significantly younger than those with human-specific low expression. Next, we show that human proteins with annotated regulatory functions are significantly younger than proteins with catalytic functions. Finally, we compare protein length and age in many eukaryotic species and, as expected from previous studies, find a positive, though often weak, correlation between protein age and length. ProteinHistorian is available through a web server with an intuitive interface and as a set of command line tools; this allows biologists and bioinformaticians alike to integrate these approaches into their analysis pipelines. ProteinHistorian's modular, extensible design facilitates the integration of new datasets and algorithms. The ProteinHistorian web server, source code, and pre-computed ages for 32 eukaryotic genomes are freely available under the GNU public license at http://lighthouse.ucsf.edu/ProteinHistorian/

Análises espaciais na identificação das áreas de risco para a esquistossomose mansônica no município de Lauro de Freitas, Bahia, Brasil Identification of schistosomiasis risk areas using spatial analysis in Lauro de Freitas, Bahia State, Brazil

A disseminação da esquistossomose mansônica vem desafiando o sistema de saúde brasileiro, deixando clara a necessidade da reavaliação das estratégias do programa de controle da endemia. O objetivo deste trabalho foi delimitar as áreas geográficas de risco para a esquistossomose em Lauro de Freitas, Bahia, Brasil, e estabelecer o perfil epidemiológico e socioeconômico da doença no município. Utilizou-se o estimador de densidade de Kernel para a identificação visual de aglomerados de casos e a análise de varredura espaço-temporal de Kulldorff & Nagarwalla para a obtenção de aglomerados com significância estatística e mensuração do risco. As duas técnicas identificaram quatro áreas de risco para a doença no município, com indicadores socioeconômicos mais baixos que as áreas fora dos aglomerados. A análise de correspondência múltipla mostrou um perfil diferenciado nos pacientes positivos para a esquistossomose pertencentes ao aglomerado primário. As técnicas empregadas se configuram em uma importante aquisição metodológica para a vigilância e controle da doença no município.<br>The spread of schistosomiasis mansoni defies efforts by Brazil's Unified National Health System, thus demonstrating the need to reassess endemic control programs in the country. The aim of this study was to demarcate geographic areas at risk of schistosomiasis in Lauro de Freitas, Bahia State, Brazil, and to establish the epidemiological and socioeconomic profile of the disease in this municipality (county). Kernel density estimator exploratory analysis was used for visual identification of areas at risk. Kulldorff & Nagarwalla's spatial analysis was used to obtain statistically significant clusters and to measure risk. These technologies identified four risk areas for schistosomiasis. Clusters identified within the risk areas were characterized by lower socioeconomic conditions. Multiple correspondence analyses showed a distinct profile for positive patients in the primary cluster. The techniques employed here represent an important methodological acquisition for tracking and controlling schistosomiasis in Lauro de Freitas

Water relations and osmolyte concentrations in Mediterranean seagrasses (Posidonia oceanica and Cymodocea nodosa) in response to simulated salinity increase

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