DeepTract: A Probabilistic Deep Learning Framework for White Matter Fiber Tractography

We present DeepTract, a deep-learning framework for estimating white matter fibers orientation and streamline tractography. We adopt a data-driven approach for fiber reconstruction from diffusion weighted images (DWI), which does not assume a specific diffusion model. We use a recurrent neural network for mapping sequences of DWI values into probabilistic fiber orientation distributions. Based on these estimations, our model facilitates both deterministic and probabilistic streamline tractography. We quantitatively evaluate our method using the Tractometer tool, demonstrating competitive performance with state-of-the art classical and machine learning based tractography algorithms. We further present qualitative results of bundle-specific probabilistic tractography obtained using our method. The code is publicly available at: https://github.com/itaybenou/DeepTract.git

Dating Clinopyroxene Phenocrysts in Submarine Basalts Using ^(40)Ar/^(39)Ar Geochronology

Dating submarine basalts using ^(40)Ar/^(39)Ar geochronology is often hindered by a lack of potassium‐bearing phenocrystic phases and severe alteration in the groundmass. Clinopyroxene is a common phenocrystic phase in seafloor basalts and is highly resistive to low‐temperature alteration. Here we show that clinopyroxene phenocrysts separated from marine basalts are a viable phase for ^(40)Ar/^(39)Ar incremental heating age determinations. We provide results from a pilot study comprising 16 age experiments from nine clinopyroxene separates, five of which from samples with dated coeval phases. The clinopyroxene ages range from 11.5 to 112 Ma with relatively high uncertainties (ranging from 0.8% to 7.1%; median of 1.9%) compared to more traditional phases. The clinopyroxene age plateaus form at low to moderate temperature steps and are characterized by relatively elevated K/Ca of 0.002–0.4, suggesting that other K‐bearing phases hosted within the clinopyroxene are likely degassing to yield the ^(40)Ar/^(39)Ar age information. There are three possible origins for the K and corresponding ^(40)Ar* including films of trapped melt/nanomineral inclusions along grain defects, secondary melt inclusion bands, or variations in degassing behaviors between lower and higher crystalline Ca pyroxene phases. Regardless of the source of the K, the age determinations are successful with 75% of the experiments producing long plateaus (>60% ^(39)Ar released) with mean square of the weighted deviations ranging from 0.6 to 1.5 and probability of fit values >0.05. We conclude that clinopyroxene dating by the ^(40)Ar/^(39)Ar method has the potential to provide a wealth of information for previously undated, altered seafloor lithologies and continental equivalents

Defining the word “seamount”

Author Posting. © Oceanography Society, 2010. This article is posted here by permission of Oceanography Society for personal use, not for redistribution. The definitive version was published in Oceanography 23, 1 (2010): 20-21.The term seamount has been defined many times (e.g., Menard, 1964; Wessel, 2001; Schmidt and Schmincke, 2000; Pitcher et al., 2007; International Hydrographic Organization, 2008; Wessel et al., 2010) but there is no “generally accepted” definition. Instead, most definitions serve the particular needs of a discipline or a specific paper

Vailulu’u Seamount

Author Posting. © Oceanography Society, 2010. This article is posted here by permission of Oceanography Society for personal use, not for redistribution. The definitive version was published in Oceanography 23, 1 (2010): 164-165.Vailulu’u seamount is an active underwater volcano that marks the end of the Samoan hotspot trail

Seamount sciences : quo vadis?

Author Posting. © Oceanography Society, 2010. This article is posted here by permission of Oceanography Society for personal use, not for redistribution. The definitive version was published in Oceanography 23, 1 (2010): 212-213.Seamounts are fascinating natural ocean laboratories that inform us about fundamental planetary and ocean processes, ocean ecology and fisheries, and hazards and metal resources. The more than 100,000 large seamounts are a defining structure of global ocean topography and biogeography, and hundreds of thousands of smaller ones are distributed throughout every ocean on Earth

Rifting of the oceanic Azores Plateau with episodic volcanic activity

Extension of the Azores Plateau along the Terceira Rift exposes a lava sequence on the steep northern flank of the Hirondelle Basin. Unlike typical tholeiitic basalts of oceanic plateaus, the 1.2 km vertical submarine stratigraphic profile reveals two successive compositionally distinct basanitic to alkali basaltic eruptive units. The lower unit is volumetrically more extensive with similar to 1060 m of the crustal profile forming between similar to 2.02 and similar to 1.66 Ma, followed by a second unit erupting the uppermost similar to 30 m of lavas in similar to 100 kyrs. The age of similar to 1.56 Ma of the youngest in-situ sample at the top of the profile implies that the 35 km-wide Hirondelle Basin opened after this time along normal faults. This rifting phase was followed by alkaline volcanism at D. JoAo de Castro seamount in the basin center indicating episodic volcanic activity along the Terceira Rift. The mantle source compositions of the two lava units change towards less radiogenic Nd, Hf, and Pb isotope ratios. A change to less SiO2-undersaturated magmas may indicate increasing degrees of partial melting beneath D. JoAo de Castro seamount, possibly caused by lithospheric thinning within the past 1.5 million years. Our results suggest that rifting of oceanic lithosphere alternates between magmatically and tectonically dominated phases.Peer reviewe

High-flow nasal cannula oxygen therapy for admitted COPD-patients:A retrospective cohort study

BACKGROUND: The use of High-flow nasal cannula (HFNC) is increasing in admitted COPD-patients and could provide a step in between non-invasive ventilation (NIV) and standard oxygen supply. Recent studies demonstrated that HFNC is capable of facilitating secretion removal and reduce the work of breathing. Therefore, it might be of advantage in the treatment of acute exacerbations of COPD (AECOPD). No randomized trials have assessed this for admitted COPD-patients on a regular ward and only limited data from non-randomized studies is available. OBJECTIVES: The aim of our study was to identify the reasons to initiate treatment with HFNC in a group of COPD-patients during an exacerbation, further identify those most likely to benefit from HFNC treatment and to find factors associated with treatment success on the pulmonary ward. MATERIAL AND METHODS: This retrospective study included COPD-patients admitted to the pulmonary ward and treated with HFNC from April 2016 until April 2019. Only patients admitted with severe acute exacerbations were included. Patients who had an indication for NIV-treatment where treated with NIV and were included only if they subsequently needed HFNC, e.g. when they did not tolerate NIV. Known asthma patients were excluded. RESULTS: A total of 173 patients were included. Stasis of sputum was the indication most reported to initiate HFNC-treatment. Treatment was well tolerated in 83% of the patients. Cardiac and vascular co-morbidities were significantly associated with a smaller chance of successful treatment (Respectively OR = 0.435; p = 0.013 and OR = 0.493;p = 0.035). Clinical assessment judged HFNC-treatment to be successful in 61% of the patients. Furthermore, in-hospital treatment with NIV was associated with a higher chance of HFNC failure afterwards (OR = 0.439; p = 0.045). CONCLUSION: This large retrospective study showed that HFNC-treatment in patients with an AECOPD was initiated most often for sputum stasis as primary reason. Factors associated with improved outcomes of HFNC-treatment was the absence of vascular and/or cardiac co-morbidities and no need for in-hospital NIV-treatment