Transciptome Analysis Illuminates the Nature of the Intracellular Interaction in a Vertebrate-Algal Symbiosis

During embryonic development, cells of the green alga Oophila amblystomatis enter cells of the salamander Ambystoma maculatum forming an endosymbiosis. Here, using de novo dual-RNA seq, we compared the host salamander cells that harbored intracellular algae to those without algae and the algae inside the animal cells to those in the egg capsule. This two-by-two-way analysis revealed that intracellular algae exhibit hallmarks of cellular stress and undergo a striking metabolic shift from oxidative metabolism to fermentation. Culturing experiments with the alga showed that host glutamine may be utilized by the algal endosymbiont as a primary nitrogen source. Transcriptional changes in salamander cells suggest an innate immune response to the alga, with potential attenuation of NF-κB, and metabolic alterations indicative of modulation of insulin sensitivity. In stark contrast to its algal endosymbiont, the salamander cells did not exhibit major stress responses, suggesting that the host cell experience is neutral or beneficial

Co-Cultures of Oophila Amblystomatis Between Ambystoma Maculatum and Ambystoma Gracile Hosts Show Host-Symbiont Fidelity

A unique symbiosis occurs between embryos of the spotted salamander (Ambystoma maculatum) and a green alga (Oophila amblystomatis). Unlike most vertebrate host-symbiont relationships, which are ectosymbiotic, A. maculatum exhibits both an ecto- and an endo-symbiosis, where some of the green algal cells living inside egg capsules enter embryonic tissues as well as individual salamander cells. Past research has consistently categorized this symbiosis as a mutualism, making this the first example of a “beneficial” microbe entering vertebrate cells. Another closely related species of salamander, Ambystoma gracile, also harbors beneficial Oophila algae in its egg capsules. However, our sampling within the A. gracile range consistently shows this to be a strict ectosymbiotic interaction—with no sign of tissue or presumably cellular entry. In this study we swapped cultured algae derived from intracapsular fluid of different salamander hosts to test the fidelity of tissue entry in these symbioses. Both A. maculatum and A. gracile embryos were raised in cultures with their own algae or algae cultured from the other host. Under these in vitro culture conditions A. maculatum algae will enter embryonic A. maculatum tissues. Additionally, although at a much lower frequency, A. gracile derived algae will also enter A. maculatum host tissues. However, neither Oophila strain enters A. gracile hosts in these co-culture conditions. These data reveal a potential host-symbiont fidelity that allows the unique endosymbiosis to occur in A. maculatum, but not in A. gracile. However, preliminary trials in our study found that persistent endogenous A. maculatum algae, as opposed to the cultured algae used in subsequent trials, enters host tissues at a higher frequency. An analysis of previously published Oophila transcriptomes revealed dramatic differences in gene expression between cultured and intracapsular Oophila. These include a suite of genes in protein and cell wall synthesis, photosynthesis, central carbon metabolism suggesting the intracapsular algae are assimilating ammonia for nitrogen metabolism and may be undergoing a life-cycle transition. Further refinements of these co-culture conditions could help determine physiological differences between cultured and endogenous algae, as well as rate-limiting cues provided for the alga by the salamander

Germline Transgenic Methods for Tracking Cells and Testing Gene Function During Regeneration in the Axolotl

The salamander is the only tetrapod that regenerates complex body structures throughout life. Deciphering the underlying molecular processes of regeneration is fundamental for regenerative medicine and developmental biology, but the model organism had limited tools for molecular analysis. We describe a comprehensive set of germline transgenic strains in the laboratory-bred salamander Ambystoma mexicanum(axolotl) that open up the cellular and molecular genetic dissection of regeneration. We demonstrate tissue-dependent control of gene expression in nerve, Schwann cells, oligodendrocytes, muscle, epidermis, and cartilage. Furthermore, we demonstrate the use of tamoxifen-induced Cre/loxP-mediated recombination to indelibly mark different cell types. Finally, we inducibly overexpress the cell-cycle inhibitor p16INK4a, which negatively regulates spinal cord regeneration. These tissue-specific germline axolotl lines and tightly inducible Cre drivers and LoxP reporter lines render this classical regeneration model molecularly accessible

Effect of soil conditions and landscape factors on macro-snail communities in newly created grasslands of restored landfill sites in the UK

Though restored landfill sites provide habitat for a number of taxa, their potential for land snail remains unexplored. In this study, large-sized land snails (> 5 mm) were surveyed using transect sampling on nine restored landfill sites and nine corresponding nature sites in the East Midlands region of the UK during 2008. The effect of restoration was investigated by examining land snail species composition, richness, and diversity (Shannon Weiner index) in relation to habitat and landscape structure. Thirteen macro-snail species were found in total and rarefied species richness and diversity on restored landfill sites was not found to be statistically different to that of reference sites. One third of the snail species, comprising 30% of total abundance, found in the restored landfill sites were non-native species introduced to the UK. Soil electrical conductivity was the strongest predictor for richness and diversity of land snails. Road density was found to have a positive influence on snail species diversity. Given the high percentage of introduced species detected further research is needed in terms of the management implications of restored landfill sites and the dynamics of native versus non-native species

Using elemental chemostratigraphy on Mid-Late Frasnian platform-top successions from the Lennard Shelf outcrops, Canning Basin, Western Australia.

High-resolution chronostratigraphic correlation using elemental chemostratigraphy in platform carbonates is typically difficult to achieve. Here, elemental chemostratigraphy is used to correlate between two platform-top, carbonate-dominated field sections from the narrow Lennard Shelf that existed on the NE margin of the Canning Basin, Western Australia, during the mid–late Frasnian. The correlation, constrained by magnetic polarity reversals and physical ground truthing, is based on recognition of distinctive cyclical ‘‘stacking patterns’’ defined by changes in concentrations of the trace element zirconium (Zr). Zr concentrations are controlled by the amount of the heavy mineral zircon in the sediments, which is derived from a terrigenous source and is diagenetically very stable. The stacking patterns in the lower part of the study sections display gradually upward-increasing values of Zr to a maximum, followed by an almost immediate fall to a minimum. In the upper part of the study interval, the cycles are more symmetrical, with both gradually increasing and decreasing portions. The point at which the change in Zr stacking pattern occurs in the two sections is synchronous and occurs in association with a supersequence maximum flooding surface. The correlation based on maximum and minimum Zr values throughout the two sections is demonstrated to be chronostratigraphic by comparison with correlations based upon paleomagnetism and physical ground truthing. When element ratios commonly used as provenance and paleoclimate proxies are plotted, the variations between closely spaced samples are greater than any systematic variations throughout the study intervals. Therefore, no isochemical chemozones can be defined, implying that during deposition of the study intervals, there were no long-lived changes in sediment provenance or paleoclimate that the elemental chemistry can detect. The work presented here shows that the standard approach of defining isochemical chemozones for chemostratigraphic correlation is not always appropriate. However, an approach using cyclical changes in elemental variables for chemostratigraphic correlation between two closely spaced sections is chronostratigraphically valid. The greater challenge is in application of the same approach to more widely spaced sections, potentially in different facies of a carbonate setting

Electrochemical recovery of zinc from the spent pickling baths coming from the hot dip galvanizing industry. Potentiostatic operation

An electrochemical reactor was developed to recover zinc from the spent pickling solutions coming from the hot dip galvanizing industry. These solutions mainly contain ZnCl2 and FeCl2 in aqueous HCl media. The effect of the applied potential on the figures of merit (fractional conversion, current efficiency, space-time yield and specific energy consumption) of the electrochemical reactor was analysed. Voltammetric experiments were performed previously in order to select the optimum conditions to be applied in the electrolysis experiments. From the I-V curves it was inferred that bulk zinc deposition started from potential values more cathodic than -0.99 V. The hydrogen evolution reaction (HER) appeared from -0.45 V and masked the zinc cathodic peak C1, related to bulk zinc deposition, at high HCl concentrations. The presence of HCl inhibited iron deposition in synthetic samples. The additives present in the real baths, which diminish the massive hydrogen generation, allowed the observation of peak C1. The potential values to be applied in the electrolysis experiments were chosen from the voltammetric experiments and ranged between -1 V and -1.75 V. In the absence of iron in solution, as the electrode potential was shifted towards more negative values, the space-time yield of zinc and its fractional conversion increased because of the increase in the electrode roughness and the hydrogen turbulence-promoting action. Simultaneously, the specific energy consumption decreased initially due to the increase in the zinc conversion rate but decreased for the most cathodic potential value due to HER. The presence of iron in synthetic solutions led to a decrease in current efficiency associated with the reverse redox Fe 2+/Fe3+ system and to the enhancement of the HER, which also induced increments in the local pH and the subsequent zinc redissolution for the most cathodic potential values. On the contrary, the additives present in the real spent pickling baths avoided the adverse effects of iron, and zinc electrodeposition was possible even at high cathodic potential values. In fact, a potential value of -1.75 V was selected as the optimum since the conversion, the current efficiency and the space time yield obtained in the real baths were relatively high.Authors want to express their gratitude to the Universidad Politecnica de Valencia for the economical support in the project reference PAID-06-08, and to the Generalitat Valenciana for the financing of the project reference GV/2010/029.Carrillo Abad, J.; García Gabaldón, M.; Ortega Navarro, EM.; Pérez-Herranz, V. (2011). Electrochemical recovery of zinc from the spent pickling baths coming from the hot dip galvanizing industry. Potentiostatic operation. Separation and Purification Technology. 81(2):200-207. https://doi.org/10.1016/j.seppur.2011.07.029S20020781

The distribution of pond snail communities across a landscape: separating out the influence of spatial position from local habitat quality for ponds in south-east Northumberland, UK

Ponds support a rich biodiversity because the heterogeneity of individual ponds creates, at the landscape scale, a diversity of habitats for wildlife. The distribution of pond animals and plants will be influenced by both the local conditions within a pond and the spatial distribution of ponds across the landscape. Separating out the local from the spatial is difficult because the two are often linked. Pond snails are likely to be affected by both local conditions, e.g. water hardness, and spatial patterns, e.g. distance between ponds, but studies of snail communities struggle distinguishing between the two. In this study, communities of snails were recorded from 52 ponds in a biogeographically coherent landscape in north-east England. The distribution of snail communities was compared to local environments characterised by the macrophyte communities within each pond and to the spatial pattern of ponds throughout the landscape. Mantel tests were used to partial out the local versus the landscape respective influences. Snail communities became more similar in ponds that were closer together and in ponds with similar macrophyte communities as both the local and the landscape scale were important for this group of animals. Data were collected from several types of ponds, including those created on nature reserves specifically for wildlife, old field ponds (at least 150 years old) primarily created for watering livestock and subsidence ponds outside protected areas or amongst coastal dunes. No one pond type supported all the species. Larger, deeper ponds on nature reserves had the highest numbers of species within individual ponds but shallow, temporary sites on farm land supported a distinct temporary water fauna. The conservation of pond snails in this region requires a diversity of pond types rather than one idealised type and ponds scattered throughout the area at a variety of sites, not just concentrated on nature reserves

Recovery of zinc from spent pickling solutions using an electrochemical reactor in presence and absence of an anion-exchange membrane: Galvanostatic operation

The performance of a one- and two-compartment electrochemical reactor under galvanostatic control for zinc recovery present in the spent pickling solutions is studied in this paper. These solutions, which mainly contain ZnCl 2 and FeCl 2 in aqueous HCl media, come from the hot dip galvanizing industry. The effect of the anion-exchange membrane (AEM) on the figures of merit of the electrochemical reactor is analyzed. In the absence of iron in solution, as the current value was shifted towards more negative values, the zinc fractional conversion increased because of the increase in the zinc reduction rate. However, the increase in current values made current efficiency decrease due to the hydrogen-reduction side reaction, which caused an increment in the specific energy consumption. The presence of iron in synthetic solutions led to a decrease in current efficiency associated with the reverse redox Fe 2+/Fe 3+ system and to the enhancement of the HER, which also induced increments in the local pH and the subsequent zinc redissolution. These adverse effects related to the presence of iron could be minimized by the interposition of an AEM. In this case, the zinc redissolution was eliminated which enabled zinc conversion values close to 100% together with higher current efficiencies as the consumption of current by the system Fe 2+/Fe 3+ was diminished. © 2012 Elsevier B.V. All rights reserved.Authors want to express their gratitude to the Universidad Politecnica de Valencia for the economic support in the Project Reference PAID-06-08, and to the Generalitat Valenciana for the financing of the Project Reference GV/2010/029.Carrillo Abad, J.; García Gabaldón, M.; Ortega Navarro, EM.; Pérez-Herranz, V. (2012). Recovery of zinc from spent pickling solutions using an electrochemical reactor in presence and absence of an anion-exchange membrane: Galvanostatic operation. Separation and Purification Technology. 98:366-374. https://doi.org/10.1016/j.seppur.2012.08.006S3663749

Integrated stratigraphic correlation of Upper Devonian platform-to-basin carbonate sequences, Lennard Shelf, Canning Basin, Western Australia: advances in carbonate margin-to-slope sequence stratigraphy and stacking patterns

High-resolution, time-significant correlations are integral to meaningful stratigraphic frameworks in depositional systems, but may be difficult to achieve using traditional sequence stratigraphic or biostratigraphic approaches alone, particularly in geologically complex settings. In steep, reefal carbonate margin-to-slope systems, such correlations are essential to unravel shelf-to-basin transitions, characterize strike variability, and develop predictive sequence stratigraphic models – concepts which are currently poorly understood in these heterogeneous settings. The Canning Basin Chronostratigraphy Project (CBCP) integrates multiple independent datasets (including biostratigraphy, magnetostratigraphy, stable isotope chemostratigraphy, and sequence stratigraphy) extracted from Upper Devonian (Frasnian and Famennian) reefal platform exposures along the Lennard Shelf, Canning Basin, Western Australia. These were used to generate a well-constrained stratigraphic framework and shelf-to-basin composite reconstruction of the carbonate system. The resultant integrated framework allows for unprecedented analysis of carbonate margin-to-slope heterogeneity, depositional architecture, and sequence stratigraphy along the Lennard Shelf. Systems tract architecture, facies partitioning, and stacking patterns of margin to lower-slope environments were assessed for six composite-scale sequences that form part of a transgressive-to-regressive supersequence and span the Frasnian-Famennian (F-F) biotic crisis. Variations are apparent in margin styles, foreslope facies proportions, dominant resedimentation processes, downslope contributing sediment factories, and vertical rock successions, related to hierarchical accommodation signals and ecological changes associated with F-F boundary. We present these results in the form of carbonate margin-to-basin sequence stratigraphic models and associations that link seismic-scale architecture to fine-scale facies heterogeneity. These models provide a predictive foundation for characterization of steep-sided flanks of reefal carbonate platform systems that is useful for both industry and academia. This study emphasizes the utility of an integrated stratigraphic approach and the insights gained from better-constrained facies and stratal architecture analysis; insights that were not achievable with traditional sequence stratigraphic or biostratigraphic techniques alone

Treatment of spent pickling baths coming from hot dip galvanizing by means of an electrochemical membrane reactor

The performance of a one (OCR) and a two-compartment electrochemical reactor in the presence of a cation-exchange membrane (CEM) for the zinc recovery present in the spent pickling baths is analyzed in this paper under galvanostatic control. These solutions, which mainly contain ZnCl2 and FeCl2 in aqueous HCl media, come from the hot dip galvanizing industry. The effect of the applied current, the dilution factor of the baths and the presence or absence of initial cathodic zinc is also studied. For the 1:50 diluted spent bath, OCR experiments initially present higher values of the figures of merit than those obtained in the presence of the CEM since zinc is close to the cathode from the first electrolysis instants. However, at long electrolysis times, OCR presents zinc redissolution for all the current values tested due to the chlorine and iron presence close to the zinc deposits. In addition, the iron codeposition phenomenon is also observed in the OCR experiments when pH values are close to 2. On the other hand, CEM experiments become very similar to the OCR experiments at long time values since the CEM under these experimental conditions prevents zinc redissolution phenomenon and also iron codeposition. When the 1:50 diluted bath is concentred to 1:10, OCR experiments present the same tendency as that observed for the 1:50 dilution factor but the effect of zinc redissolution is increased due to the greater amount of chlorine generated in the anode. Under these experimental conditions, iron deposition has also been observed in the presence of the cation-exchange membrane as the rate of zinc deposition is greater than that of zinc transport through the membrane, and the zinc/iron ratio in the cathodic compartment is not high enough to prevent iron codeposition. In both cases, the pH values when iron codeposits with zinc are close to 2 and the zinc/iron ratio is below 0.6. The presence of initial zinc in the cathodic compartment of the electrochemical reactor enhances the reactor performance since it allows the zinc–iron separation in one single step and avoids the zinc redissolution phenomenon.The authors want to express their gratitude to the Generalitat Valenciana for a postgraduate grant (GV/2010/029) and to the Ministerio de Economia y Competitividad for financing the project number CTQ2012-37450-C02-01/PPQ.Carrillo Abad, J.; García Gabaldón, M.; Pérez Herranz, V. (2014). Treatment of spent pickling baths coming from hot dip galvanizing by means of an electrochemical membrane reactor. Desalination. 343:38-47. https://doi.org/10.1016/j.desal.2013.11.040S384734