A mouse protein that localizes to acrosome and sperm tail is regulated by Y-chromosome

BACKGROUND: Acrosomal proteins play crucial roles in the physiology of fertilization. Identification of proteins localizing to the acrosome is fundamental to the understanding of its contribution to fertilization. Novel proteins are still being reported from acrosome. In order to capture yet unreported proteins localizing to acrosome in particular and sperm in general, 2D-PAGE and mass spectrometry analysis of mouse sperm proteins was done. RESULTS: One of the protein spots identified in the above study was reported in the NCBI database as a hypothetical protein from Riken cDNA 1700026L06 that localizes to chromosome number 2. Immunofluorescence studies using the antibody raised in rabbit against the recombinant protein showed that it localized to mouse acrosome and sperm tail. Based on the localization of this protein, it has been named mouse acrosome and sperm tail protein (MAST, [Q7TPM5 (http://www.ncbi.nlm.nih.gov/protein/Q7TPM5)]). This protein shows 96% identity to the rat spermatid specific protein RSB66. Western blotting showed that MAST is expressed testis-specifically. Co-immunoprecipitation studies using the MAST antibody identified two calcium-binding proteins, caldendrin and calreticulin as interacting partners of MAST. Caldendrin and calreticulin genes localize to mouse chromosomes 5 and 8 respectively. In a Yq-deletion mutant mouse, that is subfertile and has a deletion of 2/3rd of the long arm of the Y chromosome, MAST failed to localize to the acrosome. Western blot analysis however, revealed equal expression of MAST in the testes of wild type and mutant mice. The acrosomal calcium-binding proteins present in the MAST IP-complex were upregulated in sperms of Yq-del mice. CONCLUSIONS: We have identified a mouse acrosomal protein, MAST, that is expressed testis specifically. MAST does not contain any known motifs for protein interactions; yet it complexes with calcium-binding proteins localizing to the acrosome. The misexpression of all the proteins identified in a complex in the Yq-del mice invokes the hypothesis of a putative pathway regulated by the Y chromosome. The role of Y chromosome in the regulation of this complex is however not clear from the current study

Penetration depth and tunneling studies in very thin epitaxial NbN films

We investigate evolution of the magnetic penetration depth and superconducting energy gap in epitaxial NbN films using a low frequency mutual inductance technique and tunneling spectroscopy using a low temperature scanning tunneling microscope (STM). The superconducting transition temperature (Tc) for films grown under optimal growth conditions decreases monotonically from 15.87K to 9.16K as the film thickness is decreased from 50nm to 3nm. With decrease in film thickness delta(0) monotonically decreases, whereas lambda(0) monotonically increases. We observe that Tc, lambda(o) and delta(0) are well described by Bardeen-Cooper-Schrieffer (BCS) theory in all films other than the two thinnest ones where we see evidence of the Kosterlitz-Thouless-Berezinski (KTB) transition close to Tc.Comment: Modified version with extensive analysis of the KTB transition. One new author adde

Phase diagram and upper critical field of homogenously disordered epitaxial 3-dimensional NbN films

We report the evolution of superconducting properties with disorder, in 3-dimensional homogeneously disordered epitaxial NbN thin films. The effective disorder in NbN is controlled from moderately clean limit down to Anderson metal-insulator transition by changing the deposition conditions. We propose a phase diagram for NbN in temperature-disorder plane. With increasing disorder we observe that as kFl-->1 the superconducting transition temperature (Tc) and minimum conductivity (sigma_0) go to zero. The phase diagram shows that in homogeneously disordered 3-D NbN films, the metal-insulator transition and the superconductor-insulator transition occur at a single quantum critical point at kFl~1.Comment: To appear in Journal of Superconductivity and Novel Magnetism (ICSM2010 proceedings

Tunneling studies in a homogeneously disordered s-wave superconductor: NbN

We report the evolution of superconducting properties as a function of disorder in homogeneously disordered epitaxial NbN thin films grown on (100) MgO substrates, studied through a combination of electrical transport, Hall Effect and tunneling measurements. The thickness of all our films are >50nm much larger than the coherence length ~5nm. The effective disorder in different films encompasses a large range, with the Ioffe-Regel parameter varying in the range kFl~1.38-8.77. Tunneling measurements on films with different disorder reveals that for films with large disorder the bulk superconducting transition temperature (Tc) is not associated with a vanishing of the superconducting energy gap, but rather a large broadening of the superconducting density of states. Our results provide strong evidence of the loss of superconductivity via phase-fluctuations in a disordered s-wave superconductor.Comment: pdf file including figure

Why shot noise does not generally detect pairing in mesoscopic superconducting tunnel junctions

The shot noise in tunneling experiments reflects the Poissonian nature of the tunneling process. The shot noise power is proportional to both the magnitude of the current and the effective charge of the carrier. Shot-noise spectroscopy thus enables - in principle - to determine the effective charge q of the charge carriers that tunnel. This can be used to detect electron pairing in superconductors: in the normal state, the noise corresponds to single electron tunneling (q = 1e), while in the paired state, the noise corresponds to q = 2e, because of Andreev reflections. Here, we use a newly developed amplifier to reveal that in typical mesoscopic superconducting junctions, the shot noise does not reflect the signatures of pairing and instead stays at a level corresponding to q = 1e. We show that transparency can control the shot noise and this q = 1e is due to the large number of tunneling channels with each having very low transparency. At such transparencies, the shot noise in the junction resembles that of a metallic instead of a superconducting tunnel junction. Our results indicate that in typical mesoscopic superconducting junctions one should expect q = 1e noise, and lead to design guidelines for junctions that allow the detection of electron pairing

Temperature dependence of resistivity and Hall-coefficient in a strongly disordered metal: NbN

We report the temperature dependence of resistivity (rho) and Hall coefficient (R_H) in the normal state of homogeneously disordered epitaxial NbN thin films with kFl~3.27-10.12. The superconducting transition temperature (Tc) of these films varies from 8.13K to 16.8K. While our least disordered film displays usual metallic behavior, for all the films with kFl<8.13, both and are negative up to 300K. We observe that R_H(T) varies linearly with rho(T) for all the films. Measurements performed on a 2nm thick Be film shows similar behavior >. This behavior is inconsistent with existing theories of localization and e-e interactions in a disordered metal.Comment: pdf file with figure

CAD-based shape optimisation of the NASA CRM wing-body intersection using differentiated CAD-kernel

In industrial design existence of a master CAD geometry of a product enables simultaneous multi-disciplinary collaboration. Adjoint CFD methods have become increasingly accepted for aerodynamic shape optimisations due to their low computational cost. However, use of CAD-based parametrisations for aerodynamic gradient-based shape optimisation is not widely used, one reason being that current CAD systems to do not compute derivatives. In this work, we present the automatically differentiated (AD) version of Open Cascade Technology (OCCT) CAD kernel which can provide derivatives with respect to CAD parameters. OCCT is differentiated in block-vector AD mode which significantly reduces the cost for computing the derivatives. This work contains further OCCT extension for NURBS-based optimisation with intersecting patches and a description of the surface mesh movement linked to the change of the intersection line. These techniques are applied to the drag reduction of the NASA Common Research Model via the modification of the intersection between the root fairing and the wing