Environmental Factors Linked to Harmful Algal Bloom Induced Shellfish Toxicity in Cobscook Bay, Maine

The Gulf of Maine experiences annual closures of shellfish harvesting due to the accumulation of toxins resulting from harmful algal blooms of the dinoflagellate Alexandrium spp. If ingested by humans, these toxins can cause paralytic shellfish poisoning. The factors affecting the timing, location, and magnitude of these events remain poorly understood. Previous work found no obvious correlations between Gulf of Maine oceanographic variability and interannual variability in toxicity in the strongly tidally mixed eastern Maine coastal region in the vicinity of Cobscook Bay. Using 21 years (1985-2005) of Maine Department of Marine Resources shellfish toxicity data, interannual variability in two metrics of annual toxicity, maximum magnitude and integrated total annual toxicity, are examined for relationships to a suite of environmental variables. Consistent with earlier work, no correlation was found between toxicity and oceanographic variables, even when individual station toxicity was compared to very proximate variables such as local sea surface temperature and river discharge. However, correlations between toxicity and two variables indicative of local weather, dew point and atmospheric pressure, both suggest a link between increased toxicity and clearer skies/ drier air. As no correlation was evident between toxicity and local precipitation, we hypothesize that the link is through light availability in this persistently foggy section of coast

Ty1 integrase overexpression leads to integration of non-Ty1 DNA fragments into the genome of Saccharomyces cerevisiae

The integrase of the Saccharomyces cerevisiae retrotransposon Ty1 integrates Ty1 cDNA into genomic DNA likely via a transesterification reaction. Little is known about the mechanisms ensuring that integrase does not integrate non-Ty DNA fragments. In an effort to elucidate the conditions under which Ty1 integrase accepts non-Ty DNA as substrate, PCR fragments encompassing a selectable marker gene were transformed into yeast strains overexpressing Ty1 integrase. These fragments do not exhibit similarity to Ty1 cDNA except for the presence of the conserved terminal dinucleotide 5′-TG-CA-3′. The frequency of fragment insertion events increased upon integrase overexpression. Characterization of insertion events by genomic sequencing revealed that most insertion events exhibited clear hallmarks of integrase-mediated reactions, such as 5 bp target site duplication and target site preferences. Alteration of the terminal dinucleotide abolished the suitability of the PCR fragments to serve as substrates. We hypothesize that substrate specificity under normal conditions is mainly due to compartmentalization of integrase and Ty cDNA, which meet in virus-like particles. In contrast, recombinant integrase, which is not confined to virus-like particles, is able to accept non-Ty DNA, provided that it terminates in the proper dinucleotide sequence

Environmental and Genetic Determinants of Colony Morphology in Yeast

Nutrient stresses trigger a variety of developmental switches in the budding yeast Saccharomyces cerevisiae. One of the least understood of such responses is the development of complex colony morphology, characterized by intricate, organized, and strain-specific patterns of colony growth and architecture. The genetic bases of this phenotype and the key environmental signals involved in its induction have heretofore remained poorly understood. By surveying multiple strain backgrounds and a large number of growth conditions, we show that limitation for fermentable carbon sources coupled with a rich nitrogen source is the primary trigger for the colony morphology response in budding yeast. Using knockout mutants and transposon-mediated mutagenesis, we demonstrate that two key signaling networks regulating this response are the filamentous growth MAP kinase cascade and the Ras-cAMP-PKA pathway. We further show synergistic epistasis between Rim15, a kinase involved in integration of nutrient signals, and other genes in these pathways. Ploidy, mating-type, and genotype-by-environment interactions also appear to play a role in the controlling colony morphology. Our study highlights the high degree of network reuse in this model eukaryote; yeast use the same core signaling pathways in multiple contexts to integrate information about environmental and physiological states and generate diverse developmental outputs

Sudden and gradual responses of phytoplankton to global climate change: case studies from two large, shallow lakes (Balaton, Hungary and the Neusiedlersee Austria/Hungary)

This paper analyses two phytoplankton long-term datasets; both are from large, temperate shallow lakes. The main difference between them is that phytoplankton growth in Lake Balaton remained severely P-limited despite P-driven eutrophication during the last 30 years, whereas extremely high turbidity causes a permanent light limitation in Neusiedlersee and therefore an increase in P-loadings did not result in a similar increase in phytoplankton biomass. Neusiedlersee is a (slightly) saline inland lake. In Lake Balaton, the blue-green alga Cylindrospermopsis raciborskii blooms invariably if the July-august temperature deviates positively from a 30-year average by ca. 2 °C. A supposed global warming is predicted to cause a higher frequency (but not intensity!) of these blooms. Neusiedlersee is very shallow and therefore regulation techniques cannot prevent water levels sinking in successive dry years. Annual averages of phytoplankton seem to follow quite a regular, wave-like cyclicity. Such cycles can be recognised in the population records of the characteristic species. Similar changes were seen in changes of water level, conductivity, inorganic-P, inorganic N-forms and nutrient ratios. How phytoplankton species can follow a climatic cycle that covers 200 to 500 generations has not yet become clear. Because of reasons discussed in the paper, neither of the two cases can be generalised; each is quite individual

Molecular interactions between Hel2 and RNA supporting ribosome-associated quality control

Ribosome-associated quality control (RQC) pathways monitor and respond to stalling of the translating ribosome. Here the authors show that the ribosome associated RQC factor Hel2/ZNF598, an E3 ubiquitin ligase, generally interacts with mRNAs in the vicinity of stop codons

FAR1 LINKS THE SIGNAL-TRANSDUCTION PATHWAY TO THE CELL-CYCLE MACHINERY IN YEAST

Alpha factor induces arrest of yeast a cells in G1 and transcription of genes involved in mating. Prior work indicates that FUS3, a member of the MAP kinase family, and FAR1, whose molecular activity is unknown, contribute to cell cycle arrest by inhibiting G1 cyclins. Here we show that FAR1 is a substrate for FUS3 and that this phosphorylation regulates association of FAR1 with CDC28-CLN2 kinase. We show also that FAR1 is phosphorylated in vitro by the CDC28-CLN2 complex and in vivo in a CDC28-dependent manner. Mutational analysis of FAR1 reveals a correlation between its ability to associate with CDC28-CLN2 and to arrest the cell cycle. These results suggest that FAR1 protein is the link between the signaling pathway and the cell cycle machinery