Modeling and Analysis Generic Interface for eXternal numerical codes (MAGIX)

The modeling and analysis generic interface for external numerical codes (MAGIX) is a model optimizer developed under the framework of the coherent set of astrophysical tools for spectroscopy (CATS) project. The MAGIX package provides a framework of an easy interface between existing codes and an iterating engine that attempts to minimize deviations of the model results from available observational data, constraining the values of the model parameters and providing corresponding error estimates. Many models (and, in principle, not only astrophysical models) can be plugged into MAGIX to explore their parameter space and find the set of parameter values that best fits observational/experimental data. MAGIX complies with the data structures and reduction tools of ALMA (Atacama Large Millimeter Array), but can be used with other astronomical and with non-astronomical data.Comment: 12 pages, 15 figures, 2 tables, paper is also available at http://www.aanda.org/articles/aa/pdf/forth/aa20063-12.pd

Bound, virtual and resonance SS-matrix poles from the Schr\"odinger equation

A general method, which we call the potential $S$-matrix pole method, is developed for obtaining the $S$-matrix pole parameters for bound, virtual and resonant states based on numerical solutions of the Schr\"odinger equation. This method is well-known for bound states. In this work we generalize it for resonant and virtual states, although the corresponding solutions increase exponentially when $r\to\infty$. Concrete calculations are performed for the $1^+$ ground and the $0^+$ first excited states of $^{14}\rm{N}$, the resonance $^{15}\rm{F}$ states ($1/2^+$, $5/2^+$), low-lying states of $^{11}\rm{Be}$ and $^{11}\rm{N}$, and the subthreshold resonances in the proton-proton system. We also demonstrate that in the case the broad resonances their energy and width can be found from the fitting of the experimental phase shifts using the analytical expression for the elastic scattering $S$-matrix. We compare the $S$-matrix pole and the $R$-matrix for broad $s_{1/2}$ resonance in ${}^{15}{\rm F}$Comment: 14 pages, 5 figures (figures 3 and 4 consist of two figures each) and 4 table

Inelastic Processes in the Collision of Relativistic Highly Charged Ions with Atoms

A general expression for the cross sections of inelastic collisions of fast (including relativistic) multicharged ions with atoms which is based on the genelazition of the eikonal approximation is derived. This expression is applicable for wide range of collision energy and has the standard nonrelativistic limit and in the ultrarelativistic limit coincides with the Baltz's exact solution ~\cite{art13} of the Dirac equation. As an application of the obtained result the following processes are calculated: the excitation and ionization cross sections of hydrogenlike atom; the single and double excitation and ionization of heliumlike atom; the multiply ionization of neon and argon atoms; the probability and cross section of K-vacancy production in the relativistic $U^{92+} - U^{91+}$ collision. The simple analytic formulae for the cross sections of inelastic collisions and the recurrence relations between the ionization cross sections of different multiplicities are also obtained. Comparison of our results with the experimental data and the results of other calculations are given.Comment: 25 pages, latex, 7 figures avialable upon request,submitted to PR

Genetic diversity in soybean germplasm identified by SSR and EST-SSR markers.

Os objetivos deste trabalho foram avaliar a diversidade genética de 79 acessos de soja de diferentes regiões do mundo, agrupá-los de acordo com a similaridade e testar a correlação entre os dois tipos de marcadores utilizados. Foram utilizados marcadores microssatélites genômicos (SSR) e funcionais (EST-SSR). Trinta pares de primers SSR foram selecionados (20 genômicos e 10 EST-SSR) de acordo com sua distribuição nos 20 grupos de ligação da soja, com sua unidade de repetição trinucleotídica e com seu conteúdo de informação polimórfica. Todos os lócus analisados foram polimórficos, e 259 alelos foram encontrados. O número de alelos por lócus variou entre 2?21, com média de 8,63. Os acessos possuem uma quantidade significativa de alelos raros, sendo os acessos 19, 35, 63 e 65 os que apresentaram maior número de alelos exclusivos. Os acessos 75 e 79 são os mais similares e os acessos 31 e 35, e 40 e 78 são os mais divergentes. Foi observada baixa correlação entre resultados de SSR e EST-SSR. Portanto, uma análise adequada de diversidade em soja deve ser feita utilizando-se tanto marcadores microssatélites genômicos como funcionais. A diversidade genética dos acessos selecionados é alta, tendo sido encontrados cinco grupos e vários subgrupos. Observou-se moderada relação entre divergência genética e origem geográfica dos acessos

Cotunneling thermopower of single electron transistors

We study the thermopower of a quantum dot weakly coupled to two reservoirs by tunnel junctions. At low temperatures the transport through the dot is suppressed by charging effects (Coulomb blockade). As a result the thermopower shows an oscillatory dependence on the gate voltage. We study this dependence in the limit of low temperatures where the transport through the dot is dominated by the processes of inelastic cotunneling. We also obtain a crossover formula for intermediate temperatures which connects our cotunneling results to the known sawtooth behavior in the sequential tunneling regime. As the temperature is lowered, the amplitude of thermopower oscillations increases, and their shape changes qualitatively.Comment: 9 pages, including 4 figure

Neutron-induced astrophysical reaction rates for translead nuclei

Neutron-induced reaction rates, including fission, are calculated in the temperature range 1.d8 <T (K) < 1.d10 within the framework of the statistical model for targets with atomic number 83 < Z < 119 (from Po to Uuo) from the neutron to the proton drip-line. Four sets of rates have been calculated, utilizing - where possible - consistent nuclear data for neutron separation energies and fission barriers from Thomas-Fermi (TF), Extended Thomas-Fermi plus Strutinsky Integral (ETFSI), Finite-Range Droplet Model (FRDM) and Hartree-Fock-Bogolyubov (HFB) predictions. Tables of calculated values as well as analytic seven parameter fits in the standard REACLIB format are supplied. We also discuss the sensitivity of the rates to the input, aiming at a better understanding of the uncertainties introduced by the nuclear input.Comment: 14 pages, 10 figures, 2 tables in paper, 2 in Annex and online tables example

Motion and twisting of magnetic particles ingested by alveolar macrophages in the human lung: effect of smoking and disease

BACKGROUND: Magnetic microparticles being ingested by alveolar macrophages can be used as a monitor for intracellular phagosome motions and cytoskeletal mechanical properties. These studies can be performed in the human lung after voluntary inhalation. The influence of cigarette smoking and lung diseases on cytoskeleton dependent functions was studied. METHODS: Spherical 1.3 μm diameter ferrimagnetic iron oxide particles were inhaled by 17 healthy volunteers (40 – 65 years), 15 patients with sarcoidosis (SAR), 12 patients with idiopathic pulmonary fibrosis (IPF), and 18 patients with chronic obstructive bronchitis (COB). The retained particles were magnetized and aligned in an external 100 mT magnetic field. All magnetized particles induce a weak magnetic field of the lung, which was detected by a sensitive SQUID (superconducting quantum interference device) sensor. Cytoskeletal reorganizations within macrophages and intracellular transport cause stochastic magnetic dipole rotations, which are reflected in a decay of the magnetic lung field, called relaxation. Directed phagosome motion was induced in a weak magnetic twisting field. The resistance of the cytoplasm to particle twisting was characterized by the viscosity and the stiffness (ratio between stress to strain) of the cytoskeleton. RESULTS: One week after particle inhalation and later macrophage motility (relaxation) and cytoskeletal stiffness was not influenced by cigarette smoking, neither in healthy subjects, nor in the patients. Patients with IPF showed in tendency a faster relaxation (p = 0.06). Particle twisting revealed a non-Newtonian viscosity with a pure viscous and a viscoelastic compartment. The viscous shear was dominant, and only 27% of the shear recoiled and reflected viscoelastic properties. In patients with IPF, the stiffness was reduced by 60% (p < 0.02). An analysis of the shear rate and stress dependence of particle twisting allows correlating the rheological compartments to cytoskeletal subunits, in which microtubules mediate the pure viscous (non-recoverable) shear and microfilaments mediate the viscoelastic (recoverable) behavior. The missing correlation between relaxation and particle twisting shows that both stochastic and directed phagosome motion reflect different cytoskeletal mechanisms. CONCLUSION: Faster relaxation and a soft cytoskeleton in patients with IPF indicate alterations in cytoskeleton dependent functions of alveolar macrophages, which may cause dysfunction's in the alveolar defense, like a slower migration, a retarded phagocytosis, a disturbed phagosome lysosome fusion and an impaired clearance

Coulomb Blockade Oscillations in the Thermopower of Open Quantum Dots

We consider Coulomb blockade oscillations of thermoelectric coefficients of a single electron transistor based on a quantum dot strongly coupled to one of the leads. Analytic expression for the thermopower as a function of temperature $T$ and the reflection amplitude $r$ in the quantum point contact is obtained. Two regimes can be identified: $T \ll E_C|r|^2$ and $T \gg E_C |r|^2$, where $E_C$ is the charging energy of the dot. The former regime is characterized by weak logarithmic dependence of the thermopower on the reflection coefficient, in the latter the thermopower is linear in the reflection coefficient $|r|^2$ but depends on temperature only logarithmically.Comment: 4 pages, 1 figur

Closed shells at drip-line nuclei

The shell structure of magic nuclei far from stability is discussed in terms of the self-consistent spherical Hartree-Fock-Bogoliubov theory. In particular, the sensitivity of the shell-gap sizes and the two-neutron separation energies to the choice of particle-hole and particle-particle components of the effective interaction is investigated.Comment: 19 pages, LaTeX, 8 uuencoded figures available upon reques

Sub-threshold resonances in few-neutron systems

Three- and four-neutron systems are studied within the framework of the hyperspherical approach with a local S-wave nn-potential. Possible bound and resonant states of these systems are sought as zeros of three- and four-body Jost functions in the complex momentum plane. It is found that zeros closest to the origin correspond to sub-threshold (nnn) (1/2-) and (nnnn) (0+) resonant states. The positions of these zeros turned out to be sensitive to the choice of the $nn$--potential. For the Malfliet- Tjon potential they are E(nnn)=-4.9-i6.9 (MeV) and E(nnnn)=-2.6-i9.0 (MeV). Movement of the zeros with an artificial increase of the potential strength also shows an extreme sensitivity to the choice of potential. Thus, to generate ^3n and ^4n bound states, the Yukawa potential needs to be multiplied by 2.67 and 2.32 respectively, while for the Malfliet-Tjon potential the required multiplicative factors are 4.04 and 3.59.Comment: Latex, 22 pages, no PS-figures, submitted to J.Phys.