Introduction to an evaluation of the protection status of South Africa's vertebrates

During the Zoological Society of Southern Africa's 1994 Symposium in Pietermaritzburg, a theme session was convened to evaluate the protection status of selected groups of South African vertebrates (viz. freshwater fish, frogs, tortoises and terrapins, snakes, birds, and various mammal orders). The research papers presented during that session are reported in this number of the South African Journal of Zoology. The rationale behind the research, and the data and methods used, are described in this introductory paper. South Africa's national and international contractual obligations to conserve its biodiversity, and the urgent need for a national conservation strategy and national conservation information networks and databases, are also discussed

The problems with multi-species conservation: do hotspots, ideal reserves and existing reserves coincide?

South Africa urgently requires a national strategic plan for the conservation of the country's biodiversity. The formulation of such a plan would be relatively easy if centres (hotspots) of richness, endemism and rarity were congruent, both within and among many different taxa, if these hotspots captured a large proportion of the total species, and if hotspots fell within existing reserves. The investigation of six vertebrate taxa (viz freshwater fish, frogs, tortoises and terrapins, snakes, birds, and various mammal orders) at a national scale reveals that hotspots are not coincident within taxa. Centres of richness are concentrated in the north-eastern areas of the country, whereas endemism is concentrated in the south-west, and centres of rare and threatened (Red Data Book) species can be in either area. Paired comparisons among taxa reveal greatly varying proportional overlaps of species richness hotspots (0-72%). The proportion of total species falling in hotspots ranges from low (66% for fish) to high (92% for birds). Hotspots are thus not an efficient method of siting representative (ideal) reserves. In order to design a more representative reserve system to protect all vertebrate species, a complementarity algorithm was applied to all taxa separately, and then to all taxa combined. The combined analysis yielded more efficient results {66 reserves are required to represent all 1074 species at least once) than the separate analyses (97 reserves). Many of these representative reserves coincide with both hotspots and existing reserves, and over 85% of the hotspots of most taxa coincide with existing reserves, thus South Africa's vertebrate fauna could be more effectively protected with only moderate acquisition of new, well-sited reserves. A biome analysis reveals that these reserves will also have to incorporate areas of those biomes that are currently inadequately protected, vizgrassland, Succulent Karoo and Nama-Karoo. The methods outlined in this paper should be applied to as many other taxa as possible, in order to aid the formulation of a national strategic plan for biodiversity conservation

A systematic evaluation of the incremental protection of broad-scale habitats at Ningaloo Reef, Western Australia

Incremental increases to marine conservation areas in response to changing goals, policy, threats or new information are common practice worldwide. Ningaloo Reef, in north-western Australia, is protected by the Ningaloo Marine Park (state waters), which was expanded incrementally in 2004 so that 34% of the park now comprises 'no-take' sanctuary zones. To test the hypothesis that all habitats (benthic cover types) at Ningaloo are actually protected at this 34% level, a systematic conservation planning exercise was conducted using existing broad-scale habitat data (as a surrogate for marine biodiversity) and C-Plan decision-support software. Although subtidal and intertidal coral communities were found to be adequately protected, other habitats, particularly those in deeper waters seaward of the reef, did not attain the 34% target. Efficient incremental additions to the sanctuary zones to allow increased representation of these under-represented habitats were explored with C-Plan. It is recommended that systematic conservation planning incorporating new biodiversity and social information (now becoming available) be undertaken for the next iteration of the Ningaloo Marine Park management plan. This analysis at Ningaloo Reef serves as a useful example of a post hoc systematic approach to guide incremental expansion of existing marine protected areas in other parts of the world

The tortoises (Testudinidae) and terrapins (Pelomedusidae) of southern Africa: their diversity, distribution and conservation

Southern Africa has the richest diversity of land tortoises in the world, as well as an important radiation of pelomedusid terrapins. Total species richness has two epicentres, including the Transvaal lowveld and adjacent KwaZulu/Natal (owing to the prevalence of pelomedusid terrapins) and the Eastern and south-western Cape (owing to small testudinids). The area encompassing Lesotho, Transkei and adjacent regions, lacks testudinids for unknown reasons. Archaeological data indicates that this gap is natural, and not the result of man-induced extinctions. Endemic species are clustered in the Cape, whilst the few threatened species are more widely distributed. The majority of species is well protected in existing reserves. The small number of chelonian species in southern Africa and their relatively well-known distributions, test the efficacy of an iterative reserve selection algorithm. The presence of many allopatric (or nearly so) congeneric species leads to the selection of iterative reserves that protect peripheral populations. To avoid this, marginal records and isolated, peripheral populations should be excluded from the analysis

Patterns of distribution and current protection status of the Carnivora, Chiroptera and Insectivora in South Africa

Geographic patterns of species richness and endemism in three mammalian orders (Chiroptera, Insectivora and Carnivora) were studied in relation to the biomes and existing protected areas of greater South Africa (including Lesotho and Swaziland). Locality data for 21500 specimens representing 124 species were analysed with a geographical information system. Species richness of Chiroptera is high in the savanna biome, particularly in the north-east of the country, owing to the marginal intrusion of 14 tropical species. Endemism in Chiroptera is low, however, with only two endemic species in the fynbos and Karoo biomes. The Carnivora display less biome specificity and endemism than the Chiroptera. Whereas the north-eastern savannas have the highest species richness, the transition between the Nama-Karoo and grassland biomes is an important southern African centre of endemism for the Carnivora, particularly the smaller species. In addition to being an important centre for species richness in the Carnivora and Chiroptera, the Kruger National Park is also particularly important for Red Dala Book species in both orders. The Insectivora display both high species richness and endemism. Species richness of the Insectivora is greatest in the mesic south-east of the country, whereas endemism is most pronounced in the forest and grassland biomes. Differences in biome specificity and endemism between these orders reflect not only phylogenetic divergence, but also variation in body size, vagility and life-history strategies. Most of South Africa's endemics are small mammals and many of them are listed in the Red Data Book. Distributions, life-history strategies and trends in man-induced habitat degradation were used to re-evaluale the protection status of the 124 species. We conclude that at least 11 endemic species are not adequately protected by existing publicly owned protected areas and consequently identify several areas which need to be added to the existing protected area system

Distribution and protection of endemic or threatened rodents, lagomorphs and macrosceledids in South Africa

Distribution patterns and protection status of endemic or threatened Lagomorpha, Macroscelidea, and Rodentia were analysed using museum point locality data and a geographic information system (GIS). The study area comprised the greater South Africa (including Lesotho and Swaziland). Species richness of the target species is highest in the south-western parts of the country, and hotspots of endemism coincide with those of species richness. However, Red Data Book species hotspots are confined to the north-eastern parts of the country. One species richness hotspol in the Succulent Karoo contains no existing reserves, whereas all Red Data Book species hotspots are protected. In general, all target species are well protected within existing reserves, but those found in the Succulent and Nama-Karoo, especially the Namaqua dune molerat (Bathyergus janetta), the riverine rabbit (Bunolagus monticularis), Brants whistling rat (Parotomys brantsii), and the pygmy rock mouse (Petromyscus collinus), are threatened by a paucity of reserves in these biomes. A heuristic reserve selection algorithm was used to identify a more representative reserve system for the protection of all target species. Ten representative reserves were identified, six of which already contain existing reserves. An analysis of biome specificity of all species revealed that Myomyscus verreauxii is endemic to the fynbos, Bathyergus janetta to the Succulent Karoo, Zelotomys woosnami to the arid savanna, and Steatomys parvus to the savanna woodlands. No species are endemic to the Nama-Karoo or grasslands, although several species do show strong preferences for these habitats. It is recommended that hotspots, representative reserves, and species that are currently not protected, be awarded more protection, and that existing reserves which coincide with hotspots and representative reserves be managed for their mammal fauna. It is also recommended that the Red Data Book status of tour species, and six subspecies, should be changed

The genome of the white-rot fungus Pycnoporus cinnabarinus : a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown

Background: Saprophytic filamentous fungi are ubiquitous micro-organisms that play an essential role in photosynthetic carbon recycling. The wood-decayer Pycnoporus cinnabarinus is a model fungus for the study of plant cell wall decomposition and is used for a number of applications in green and white biotechnology.Results: The 33.6 megabase genome of P. cinnabarinus was sequenced and assembled, and the 10,442predicted genes were functionally annotated using a phylogenomic procedure. In-depth analyses were carried out for the numerous enzyme families involved in lignocellulosic biomass breakdown, for protein secretion and glycosylation pathways, and for mating type. The P. cinnabarinus genome sequence revealed a consistent repertoire of genes shared with wood-decaying basidiomycetes. P. cinnabarinus is thus fully equipped with the classical families involved in cellulose and hemicellulose degradation, whereas its pectinolytic repertoire appears relatively limited. In addition, P. cinnabarinus possesses a complete versatile enzymatic arsenal for lignin breakdown. We identified several genes encoding members of the three ligninolytic peroxidase types, namely lignin peroxidase, manganese peroxidase and versatile peroxidase. Comparative genome analyses were performed in fungi displaying different nutritional strategies (white-rot and brown-rot modes of decay). P. cinnabarinus presents a typical distribution of all thespecific families found in the white-rot life style. Growth profiling of P. cinnabarinus was performed on 35 carbon sources including simple and complex substrates to study substrate utilization and preferences. P. cinnabarinus grew faster on crude plant substrates than on pure, mono- or polysaccharide substrates. Finally, proteomic analyses were conducted from liquid and solid-state fermentation to analyze the composition of the secretomes corresponding to growth on different substrates. The distribution of lignocellulolytic enzymes in the secretomes was strongly dependent on growth conditions, especially for lytic polysaccharide mono-oxygenases.Conclusions: With its available genome sequence, P. cinnabarinus is now an outstanding model system for the study of the enzyme machinery involved in the degradation or transformation of lignocellulosic biomass.Microbial Biotechnolog

On the moments of the ground and first excited states

PTHStarting from the minoring procedure of sum rules proposed by Bertlmann and Martin, we establish relationships for the average values of x2 and x4 for the ground and first excited states in D=1. These relations require only the knowledge of the energy spectrum. Thus, for a given potential, extension to its supersymmetric partner is immediate