Combining Physical galaxy models with radio observations to constrain the SFRs of high-z dusty star forming galaxies

We complement our previous analysis of a sample of z~1-2 luminous and ultra-luminous infrared galaxies ((U)LIRGs), by adding deep VLA radio observations at 1.4 GHz to a large data-set from the far-UV to the sub-mm, including Spitzer and Herschel data. Given the relatively small number of (U)LIRGs in our sample with high S/N radio data, and to extend our study to a different family of galaxies, we also include 6 well sampled near IR-selected BzK galaxies at z~1.5. From our analysis based on the radiative transfer spectral synthesis code GRASIL, we find that, while the IR luminosity may be a biased tracer of the star formation rate (SFR) depending on the age of stars dominating the dust heating, the inclusion of the radio flux offers significantly tighter constraints on SFR. Our predicted SFRs are in good agreement with the estimates based on rest-frame radio luminosity and the Bell (2003) calibration. The extensive spectro-photometric coverage of our sample allows us to set important constraints on the SF history of individual objects. For essentially all galaxies we find evidence for a rather continuous SFR and a peak epoch of SF preceding that of the observation by a few Gyrs. This seems to correspond to a formation redshift of z~5-6. We finally show that our physical analysis may affect the interpretation of the SFR-M* diagram, by possibly shifting, with respect to previous works, the position of the most dust obscured objects to higher M* and lower SFRs.Comment: 26 pages, 15 figures, 3 tables, accepted for publication in MNRAS on Dec. 4th, 201

Fluorescent biosensors based on silicon nanowires

Nanostructures are arising as novel biosensing platforms promising to surpass current performance in terms of sensitivity, selectivity, and affordability of standard approaches. However, for several nanosensors, the material and synthesis used make the industrial transfer of such technologies complex. Silicon nanowires (NWs) are compatible with Si-based flat architecture fabrication and arise as a hopeful solution to couple their interesting physical properties and surface-to-volume ratio to an easy commercial transfer. Among all the transduction methods, fluorescent probes and sensors emerge as some of the most used approaches thanks to their easy data interpretation, measure affordability, and real-time in situ analysis. In fluorescent sensors, Si NWs are employed as substrate and coupled with several fluorophores, NWs can be used as quenchers in stem-loop configuration, and have recently been used for direct fluorescent sensing. In this review, an overview on fluorescent sensors based on Si NWs is presented, analyzing the literature of the field and highlighting the advantages and drawbacks for each strategy

Genome-wide CNV investigation suggests a role for cadherin, Wnt, and p53 pathways in primary open-angle glaucoma

BACKGROUND: To investigate whether copy number variations (CNVs) are implicated in molecular mechanisms underlying primary open-angle glaucoma (POAG), we used genotype data of POAG individuals and healthy controls from two case-control studies, AGS (n = 278) and GLGS-UGLI (n = 1292). PennCNV, QuantiSNP, and cnvPartition programs were used to detect CNV. Stringent quality controls at both sample and marker levels were applied. The identified CNVs were intersected in CNV region (CNVR). After, we performed burden analysis, CNV-genome-wide association analysis, gene set overrepresentation and pathway analysis. In addition, in human eye tissues we assessed the expression of the genes lying within significant CNVRs. RESULTS: We reported a statistically significant greater burden of CNVs in POAG cases compared to controls (p-value = 0,007). In common between the two cohorts, CNV-association analysis identified statistically significant CNVRs associated with POAG that span 11 genes (APC, BRCA2, COL3A1, HLA-DRB1, HLA-DRB5, HLA-DRB6, MFSD8, NIPBL, SCN1A, SDHB, and ZDHHC11). Functional annotation and pathway analysis suggested the involvement of cadherin, Wnt signalling, and p53 pathways. CONCLUSIONS: Our data suggest that CNVs may have a role in the susceptibility of POAG and they can reveal more information on the mechanism behind this disease. Additional genetic and functional studies are warranted to ascertain the contribution of CNVs in POAG. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12864-021-07846-1

Mitochondrial Genome Study Identifies Association Between Primary Open-Angle Glaucoma and Variants in MT-CYB, MT-ND4 Genes and Haplogroups

Background and purpose: Primary open-angle glaucoma (POAG) is an optic neuropathy characterized by death of retinal ganglion cells and atrophy of the optic nerve head. The susceptibility of the optic nerve to damage has been shown to be mediated by mitochondrial dysfunction. In this study, we aimed to determine a possible association between mitochondrial SNPs or haplogroups and POAG. Methods: Mitochondrial DNA single nucleotide polymorphisms (mtSNPs) were genotyped using the Illumina Infinium Global Screening Array-24 (GSA) 700K array set. Genetic analyses were performed in a POAG case-control study involving the cohorts, Groningen Longitudinal Glaucoma Study-Lifelines Cohort Study and Amsterdam Glaucoma Study, including 721 patients and 1951 controls in total. We excluded samples not passing quality control for nuclear genotypes and samples with low call rate for mitochondrial variation. The mitochondrial variants were analyzed both as SNPs and haplogroups. These were determined with the bioinformatics software HaploGrep, and logistic regression analysis was used for the association, as well as for SNPs. Results: Meta-analysis of the results from both cohorts revealed a significant association between POAG and the allele A of rs2853496 [odds ratio (OR) = 0.64; p = 0.006] within the MT-ND4 gene, and for the T allele of rs35788393 (OR = 0.75; p = 0.041) located in the MT-CYB gene. In the mitochondrial haplogroup analysis, the most significant p-value was reached by haplogroup K (p = 1.2 × 10(−05)), which increases the risk of POAG with an OR of 5.8 (95% CI 2.7–13.1). Conclusion: We identified an association between POAG and polymorphisms in the mitochondrial genes MT-ND4 (rs2853496) and MT-CYB (rs35788393), and with haplogroup K. The present study provides further evidence that mitochondrial genome variations are implicated in POAG. Further genetic and functional studies are required to substantiate the association between mitochondrial gene polymorphisms and POAG and to define the pathophysiological mechanisms of mitochondrial dysfunction in glaucoma

Visualization of Directional Beaming of Weakly Localized Raman from a Random Network of Silicon Nanowires

Disordered optical media are an emerging class of materials that can strongly scatter light. These materials are useful to investigate light transport phenomena and for applications in imaging, sensing and energy storage. While coherent light can be generated using such materials, its directional emission is typically hampered by their strong scattering nature. Here, the authors directly image Rayleigh scattering, photoluminescence and weakly localized Raman light from a random network of silicon nanowires via real-space microscopy and Fourier imaging. Direct imaging enables us to gain insight on the light transport mechanisms in the random material, to visualize its weak localization length and to demonstrate out-of-plane beaming of the scattered coherent Raman light. The direct visualization of coherent light beaming in such random networks of silicon nanowires offers novel opportunities for fundamental studies of light propagation in disordered media. It also opens venues for the development of next generation optical devices based on disordered structures, such as sensors, light sources, and optical switches

Ultrathin silicon nanowires for optical and electrical nitrogen dioxide detection

The ever-stronger attention paid to enhancing safety in the workplace has led to novel sensor development and improvement. Despite the technological progress, nanostructured sensors are not being commercially transferred due to expensive and non-microelectronic compatible materials and processing approaches. In this paper, the realization of a cost-effective sensor based on ultrathin silicon nanowires (Si NWs) for the detection of nitrogen dioxide (NO2 ) is reported. A modification of the metal-assisted chemical etching method allows light-emitting silicon nanowires to be obtained through a fast, low-cost, and industrially compatible approach. NO2 is a well-known dangerous gas that, even with a small concentration of 3 ppm, represents a serious hazard for human health. We exploit the particular optical and electrical properties of these Si NWs to reveal low NO2 concentrations through their photoluminescence (PL) and resistance variations reaching 2 ppm of NO2 . Indeed, these Si NWs offer a fast response and reversibility with both electrical and optical transductions. Despite the macro contacts affecting the electrical transduction, the sensing performances are of high interest for further developments. These promising performances coupled with the scalable Si NW synthesis could unfold opportunities for smaller sized and better performing sensors reaching the market for environmental monitoring

Novel mutations in the PITX2 gene in Pakistani and Mexican families with Axenfeld-Rieger syndrome

Purpose Axenfeld-Rieger syndrome (ARS) is a rare autosomal dominant disorder that affects the anterior segment of the eye. The aim of this study was to examine the PITX2 gene to identify possible novel mutations in Pakistani and Mexican families affected by the ARS phenotype. Methods Three unrelated probands with a diagnosis of ARS were recruited for this study. Genomic DNA was isolated from the peripheral blood of the probands and their family members. Polymerase chain reaction and Sanger sequencing were used for the analysis of coding exons and the flanking intronic regions of the PITX2 gene. Bioinformatics tools and database (VarSome, Provean, and MutationTaster, SIFT, PolyPhen-2, and HOPE) were evaluated to explore missense variants. Results We identified novel heterozygous variations in the PITX2 gene that segregated with the ARS phenotype within the families. The variant NM_153426.2(PITX2):c.226G > T or p.(Ala76Ser) and the mutation NM_153426.2(PITX2):c.455G > A or p.(Cys152Tyr) were identified in two Pakistani pedigrees, and the mutation NM_153426.2(PITX2):c.242_265del or p.(Lys81_Gln88del), segregated in a Mexican family. Conclusion Our study extends the spectrum of PITX2 mutations in individuals with ARS, enabling an improved diagnosis of this rare but serious syndrome

Dust properties of Lyman break galaxies at z∼3z\sim3

We explore from a statistical point of view the far-infrared (far-IR) and sub-millimeter (sub-mm) properties of a large sample of LBGs (22,000) at z~3 in the COSMOS field. The large number of galaxies allows us to split it in several bins as a function of UV luminosity, UV slope, and stellar mass to better sample their variety. We perform stacking analysis in PACS (100 and 160 um), SPIRE (250, 350 and 500 um) and AzTEC (1.1 mm) images. Our stacking procedure corrects the biases induced by galaxy clustering and incompleteness of our input catalogue in dense regions. We obtain the full IR spectral energy distributions (SED) of subsamples of LBGs and derive the mean IR luminosity as a function of UV luminosity, UV slope, and stellar mass. The average IRX is roughly constant over the UV luminosity range, with a mean of 7.9 (1.8 mag). However, it is correlated with UV slope, and stellar mass. We investigate using a statistically-controlled stacking analysis as a function of (stellar mass, UV slope) the dispersion of the IRX-UVslope and IRX-M* plane. Our results enable us to study the average relation between star-formation rate (SFR) and stellar mass, and we show that our LBG sample lies on the main sequence of star formation at z~3.Comment: Accepted to A&A, 17 Pages, 14 Figures, 2 Table

Il contributo dei batteri lattici per la presenza di melatonina nel vino rosso

La melatonina (MEL) e un\u2019indolammina implicata nella regolazione dei cicli circadiani e che ` possiede attivita antiossidante. La presenza di MEL ` e stata dimostrata nelle piante e negli alimenti con ` particolare attenzione agli alimenti e bevande fermentati, tra cui il vino. L\u2019uva e una fonte di MEL e nel ` vino l\u2019attivita metabolica del lievito svolge un ruolo cruciale per la produzione di MEL. ` E stato recentemente ` suggerito che anche i batteri lattici (LAB) posseggano tale abilita. In questo studio ` e stata indagata la sintesi ` di MEL da parte dei LAB in condizioni enologiche e di laboratorio. Sono stati analizzati 8 vini rossi prodotti su scala industriale in 4 cantine. Inoltre, 11 ceppi di LAB sono stati inoculati in terreno sintetico simil-vino. Dai risultati ottenuti e emerso che nei vini prodotti in due delle quattro cantine ` e stato osservato un aumento ` di MEL al termine della fermentazione malolattica. Tutti i ceppi oggetto dello studio hanno prodotto MEL in condizioni di laboratorio in quantita variabile a seconda del ceppo. I risultati mettono in evidenza per la ` prima volta che i LAB sono capaci di rilasciare MEL sia in condizioni di laboratorio che nel vino prodotto industrialmente.Melatonin (MEL) is an indolamine regulating the circadian rhythms and acting as antioxidant. The presence of MEL has been evidenced in plants and foods with particular attention to fermented foods and beverages, such as wine. Grape is a source of MEL and in wine the metabolic activity of yeast is crucial for MEL production. It has been recently suggested that the lactic acid bacteria (LAB) have also this ability. In this study, the LAB-mediated production of MEL was investigated in both oenological and laboratory conditions. For this purpose, 8 red wines produced in industrial scale in 4 wineries were analysed. Moreover, 11 LAB strains were inoculated in synthetic-wine, a synthetic medium. The results showed that the concentrations of MEL increased in the wines produced in two out of four wineries at the end of the malolactic fermentation. All the investigated strains produced MEL in laboratory conditions at different levels depending to the strain itself. Our results highlighted for the first time the LABs are able to synthetize MEL in both oenological and laboratory conditions