A molecular method for the identification of resting eggs of acartiid copepods in the Thau lagoon, France

Acartia and Paracartia species, often known to co-occur, can exhibit complex life cycles, including the production of resting eggs. Studying and understanding their population dynamics is hindered by the inability to identify eggs and early developmental stages using morphological techniques. We have developed a simple molecular technique to distinguish between the three species of the Acartiidae family (Acartia clausi, A. discaudata and Paracartia grani) that co-occur in the Thau lagoon (43�250N; 03�400E) in southern France. Direct amplification of a partial region of the mitochondrial cytochrome oxidase I gene by polymerase chain reaction and subsequent restriction fragment length polymorphism results in a unique restriction profile for each species. The technique is capable of determining the identity of individual eggs, including resting eggs retrieved from sediment samples, illustrating its application in facilitating population dynamic studies of this ubiquitous and important member of the zooplankton community

Reduced up-regulation of gene expression in response to elevated temperatures in the mid-Atlantic population of Calanus finmarchicus

Abstract Climate change is affecting numerous species worldwide, including dominant and important copepods of the genus Calanus. Despite the growing body of studies that examine effects of climate change stressors on Calanus species, comparative intraspecific studies are lacking. Importantly, acclimatization and genetic adaptation can modify the stress response, thus leading to a differential response of separated populations to the same stressor. The molecular and physiological responses of a C. finmarchicus population from the mid-Atlantic, with an in situ temperature of 8.5 °C, were investigated under experimental thermal conditions of 0 °C, 5 °C, 10 °C, 15 °C, and 20 °C for durations of 3 h and 6 days. This experimental set-up mirrored previously published experiments conducted on C. finmarchicus at the northern limit of its distribution allowing a comparison between two populations. The greatest physiological response, assessed as fecal pellet production, was seen after 3 h exposure at 10 °C and 15 °C, and after 6 days exposure at 5 °C, 10 °C and 15 °C. Molecular response was assessed by the change in expression of 5 selected genes: hsp70_2, dnaja1, nap 1l1, rps11, and gdh. Only two out of the five genes (gdh and nap1l1) showed significant up-regulation with increased temperature and duration of exposure. These findings differ from the results obtained in the northern population where all 5 genes were differently expressed. Overall, the results suggest population-specific response to temperature in C. finmarchicus, however determining the source of such variation (genetic adaptation or acclimatization) requires more detailed studies

Microplastics as contaminants in the marine environment: a review

Since the mass production of plastics began in the 1940s, microplastic contamination of the marine environment has been a growing problem. Here, a review of the literature has been conducted with the following objectives: (1) to summarise the properties, nomenclature and sources of microplastics; (2) to discuss the routes by which microplastics enter the marine environment; (3) to evaluate the methods by which microplastics are detected in the marine environment; (4) to assess spatial and temporal trends of microplastic abundance; and (5) to discuss the environmental impact of microplastics. Microplastics are both abundant and widespread within the marine environment, found in their highest concentrations along coastlines and within mid-ocean gyres. Ingestion of microplastics has been demonstrated in a range of marine organisms, a process which may facilitate the transfer of chemical additives or hydrophobic waterborne pollutants to biota. We conclude by highlighting key future research areas for scientists and policymakers.NERCDepartment of the Environment, Fisheries and Rural Affair

A small-scale, portable method for extracting microplastics from marine sediments

• Cheap, effective method for microplastic extraction from sediments. • High, reproducible recovery rates - 95.8%. • Comparison of three commonly used floatation media. • Zinc chloride (1.5 g cm−3) deemed an effective floatation medium. • Method applied to environmental samples across a range of sediment types

Investigating microplastic trophic transfer in marine top predators

Microplastics are highly bioavailable to marine organisms, either through direct ingestion, or indirectly by trophic transfer from contaminated prey. The latter has been observed for low-trophic level organisms in laboratory conditions, yet empirical evidence in high trophic-level taxa is lacking. In natura studies face difficulties when dealing with contamination and differentiating between directly and indirectly ingested microplastics. The ethical constraints of subjecting large organisms, such as marine mammals, to laboratory investigations hinder the resolution of these limitations. Here, these issues were resolved by analysing sub-samples of scat from captive grey seals (Halichoerus grypus) and whole digestive tracts of the wild-caught Atlantic mackerel (Scomber scombrus) they are fed upon. An enzymatic digestion protocol was employed to remove excess organic material and facilitate visual detection of synthetic particles without damaging them. Polymer type was confirmed using Fourier-Transform Infrared (FTIR) spectroscopy. Extensive contamination control measures were implemented throughout. Approximately half of scat subsamples (48%; n ¼ 15) and a third of fish (32%; n ¼ 10) contained 1e4 microplastics. Particles were mainly black, clear, red and blue in colour. Mean lengths were 1.5mm and 2mm in scats and fish respectively. Ethylene propylene was the most frequently detected polymer type in both. Our findings suggest trophic transfer represents an indirect, yet potentially major, pathway of microplastic ingestion for any species whose feeding ecology involves the consumption of whole prey, including humans

Metabarcoding of marine zooplankton: prospects, progress and pitfalls

Metabarcoding (large-scale taxonomic identification of complex samples via analysis of one or few orthologous DNA regions, called barcodes) is revolutionizing analysis of biodiversity of marine zooplankton assemblages. Metabarcoding relies on high-throughput DNA sequencing (HTS) technologies, which yield millions of DNA sequences in parallel and allow large-scale analysis of environmental samples. Metabarcoding studies of marine zooplankton have used various regions of nuclear small- (18S) and large-subunit (28S) rRNA, which allow accurate classification of novel sequences and reliable amplification with consensus primers, but- due to their relatively conserved nature- may underestimate species diversity in a community. To discriminate species, more variable genes are needed. A limited number of metabarcoding studies have used mitochondrial cytochrome oxidase I (COI), which ensures detection of species-level diversity, but may require group-specific primers and thus result in inconsistent amplification success rates. Reference databases with sequences for accurately-identified species are critically needed to allow taxonomic designation of molecular operational taxonomic units (MOTU) and comparison with previous studies of zooplankton diversity. Potential and promising applications of metabarcoding include rapid detection of impacts of climate change, monitoring and assessment of ecosystem health, calculation of biotic indices, characterization of food webs and detection of introduced, non-indigenous species

Microplastics alter feeding selectivity and faecal density in the copepod, Calanus helgolandicus

Microplastics (1 μm–5 mm) are a ubiquitous marine contaminant of global concern, ingested by a wide range of marine taxa. Copepods are a key component of marine food webs, providing a source of food for higher trophic levels, and playing an important role in marine nutrient cycling. Microplastic ingestion has been documented in copepods, but knowledge gaps remain over how this affects feeding preference and faecal density. Here, we use exposure studies incorporating algal prey and microplastics of varying sizes and shapes at a concentration of 100 microplastics mL−1 to show: (1) prey selection by the copepod Calanus helgolandicus was affected by the size and shape of microplastics and algae they were exposed to; Exposure to nylon fibres resulted in a 6% decrease in ingestion of similar shaped chain-forming algae, whilst exposure to nylon fragments led to an 8% decrease in ingestion of a unicellular algae that were similar in shape and size. (2) Ingestion of microplastics with different densities altered the sinking rates of faecal pellets. Faeces containing low-density polyethylene sank significantly more slowly than controls, whilst sinking rates increased when faeces contained high-density polyethylene terephthalate. These results suggest that C. helgolandicus avoid ingesting algae that are similar in size and/or shape to the microplastic particles they are exposed to, potentially in a bid to avoid consuming the plastic

A global review of marine turtle entanglement in anthropogenic debris: a baseline for further action

Entanglement in anthropogenic debris poses a threat to marine wildlife. Although this is recognised as a cause of marine turtle mortality, there remain quantitative knowledge gaps on entanglement rates and population implications. We provide a global summary of this issue in this taxon using a mixed methods approach, including a literature review and expert opinions from conservation scientists and practitioners worldwide. The literature review yielded 23 reports of marine turtle entanglement in anthropogenic debris, which included records for 6 species, in all ocean basins. Our experts reported the occurrence of marine turtles found entangled across all species, life stages and ocean basins, with suggestions of particular vulnerability in pelagic juvenile life stages. Numbers of stranded turtles encountered by our 106 respondents were in the thousands per year, with 5.5% of turtles encountered entangled; 90.6% of these dead. Of our experts questioned, 84% consider that this issue could be causing population level effects in some areas. Lost or discarded fishing materials, known as ‘ghost gear’, contributed to the majority of reported entanglements with debris from land-based sources in the distinct minority. Surveyed experts rated entanglement a greater threat to marine turtles than oil pollution, climate change and direct exploitation but less of a threat than plastic ingestion and fisheries bycatch. The challenges, research needs and priority actions facing marine turtle entanglement are discussed as pathways to begin to resolve and further understand the issue. Collaboration among stakeholder groups such as strandings networks, the fisheries sector and the scientific community will facilitate the development of mitigating actions

Smells good enough to eat: Dimethyl sulfide (DMS) enhances copepod ingestion of microplastics

Marine copepods have been shown to readily ingest microplastics - a crucial first step in the transfer of plastics into the marine food chain. Copepods have also been shown to elicit a foraging behavioural response to the presence of olfactory stimuli, such as dimethyl sulfide (DMS) – a volatile compound produced by their algal prey. Here, we show that the temperate Calanoid copepod Calanus helgolandicus displays enhanced grazing rates of between 0.7 and 3-fold (72%–292%) on microplastics that have been infused in a DMS solution, compared to DMS-free controls. Environmental exposure of microplastics may result in the development of an olfactory signature that includes algal-derived compounds such as DMS. Our study provides evidence that copepods, which are known to use chemosensory mechanisms to identify and locate dense sources of palatable prey, may be at an increased risk of plastic ingestion if it mimics the scent of their prey

Microplastic Ingestion by Zooplankton

Small plastic detritus, termed “microplastics”, are a widespread and ubiquitous contaminant of marine ecosystems across the globe. Ingestion of microplastics by marine biota, including mussels, worms, fish, and seabirds, has been widely reported, but despite their vital ecological role in marine food-webs, the impact of microplastics on zooplankton remains under-researched. Here, we show that microplastics are ingested by, and may impact upon, zooplankton. We used bioimaging techniques to document ingestion, egestion, and adherence of microplastics in a range of zooplankton common to the northeast Atlantic, and employed feeding rate studies to determine the impact of plastic detritus on algal ingestion rates in copepods. Using fluorescence and coherent anti-Stokes Raman scattering (CARS) microscopy we identified that thirteen zooplankton taxa had the capacity to ingest 1.7–30.6 μm polystyrene beads, with uptake varying by taxa, life-stage and bead-size. Post-ingestion, copepods egested faecal pellets laden with microplastics. We further observed microplastics adhered to the external carapace and appendages of exposed zooplankton. Exposure of the copepod Centropages typicus to natural assemblages of algae with and without microplastics showed that 7.3 μm microplastics (>4000 mL–1) significantly decreased algal feeding. Our findings imply that marine microplastic debris can negatively impact upon zooplankton function and health