NTMG (N-terminal Truncated Mutants Generator for cDNA): an automatic multiplex PCR assays design for generating various N-terminal truncated cDNA mutants

The sequential deletion method is generally used to locate the functional domain of a protein. With this method, in order to find the various N-terminal truncated mutants, researchers have to investigate the ATG-like codons, to design various multiplex polymerase chain reaction (PCR) forward primers and to do several PCR experiments. This web server (N-terminal Truncated Mutants Generator for cDNA) will automatically generate groups of forward PCR primers and the corresponding reverse PCR primers that can be used in a single batch of a multiplex PCR experiment to extract the various N-terminal truncated mutants. This saves much time and money for those who use the sequential deletion method in their research. This server is available at http://oblab.cs.nchu.edu.tw:8080/WebSDL/

Persistence Probabilities of the German DAX and Shanghai Index

We present a relatively detailed analysis of the persistence probability distributions in financial dynamics. Compared with the auto-correlation function, the persistence probability distributions describe dynamic correlations non-local in time. Universal and non-universal behaviors of the German DAX and Shanghai Index are analyzed, and numerical simulations of some microscopic models are also performed. Around the fixed point $z_0=0$, the interacting herding model produces the scaling behavior of the real markets

ac Josephson effect in the resonant tunneling through mesoscopic superconducting junctions

We investigate ac Josephson effect in the resonant tunneling through mesoscopic superconducting junctions. In the presence of microwave irradiation, we show that the trajectory of multiple Andreev reflections can be closed by emitting or absorbing photons. Consequently, photon-assisted Andreev states are formed and play the role of carrying supercurrent. On the Shapiro steps, dc component appears when the resonant level is near a series of positions with spacing of half of the microwave frequency. Analytical result is derived in the limit of infinite superconducting gap, based on which new features of ac Josephson effect are revealed.Comment: 11 pages, 3 figure

Regeneration of soybean (Glycine max L. Merrill) through direct somatic embryogenesis from the immature embryonic shoot tip

We describe here a simple and efficient system of soybean (Glycine max L. Merrill) regeneration through direct somatic embryogenesis by using immature embryonic shoot tips (IEST) as explants. The cultivar Kaohsiung 10 (cv. K10) used in this study did not show embryogenic response either from mature seed-derived explants (cotyledon, embryonic tip, leaf, shoot and root) or immature cotyledons. However, it showed a high percentage (55.8%) of somatic embryo (SEm) formation from the IEST excised 2-3 wk after flowering, thus indicating the crucial roles of type and age of explants. The IEST put forth primary SEm after 2 mo of culturing on Murashige and Skoog (MS) medium supplemented with 6% sucrose, 164.8 A mu M 2,4-dichlorophenoxyacetic acid (2,4-D), 5 mM asparagine and 684 A mu M glutamine. Subsequently, secondary SEm were developed 1 mo after culturing on MS medium containing 123.6 A mu M 2,4-D and 3% sucrose. Cotyledonary embryos were induced on MS medium supplemented with 0.5% activated charcoal after 1 mo. The embryos were desiccated for 72-96 h on sterile Petri dishes and regenerated on hormone-free MS medium. Plantlets with well-developed shoots and roots were obtained within 5-6 mo of culturing of IEST. The SEm-derived plants were morphologically normal and fertile. Various parameters thought to be responsible for efficient regeneration of soybean through somatic embryogenesis are discussed. To our knowledge, this is the first report to employ IEST as explants for successful direct somatic embryogenesis in soybean

Alternative splicing and genetic diversity of the white collar-1 (wc-1) gene in cereal Phaeosphaeria pathogens

The white collar-1 (wc-1) gene encodes an important light-responsive protein (wc-1) that maintains circadian clocks and controls numerous light-dependent reactions including sporulation in ascomycete fungi. The structure and expression of the wc-1 gene in wheat-biotype Phaeosphaeria nodorum (PN-w) was studied. It was shown that the full-size (3,353 bp in length) wc-1 gene in PN-w contained 4 introns in which introns 1 and 2 were flanked by GC-AG splice borders and were spliced constitutively. However, introns 3 and 4 of the wc-1 gene were alternatively spliced. As the result of alternative splicing (AS), six transcript variants were identified, encoding different lengths of deduced polypeptides (from 1,044 to 1,065aa). Ratios of the wc-1 gene transcript variants in the RNA population were the same in the sporulated and non-sporulated PN-w isolate Sn37-1 and the sporulated PN-w isolate S-79-1, grown under light/dark conditions. The AS of the wc-1 gene may control various light-dependent reactions in PN-w, which leads to diverse morphological, physiological and pathological characters for pathogen infection and spread. Based on the nucleotide and deduced amino acid sequences, the wc-1 gene in cereal Phaeosphaeria pathogens was diverse. It appeared that the deduced wc-1 polypeptide sequences of P. avenaria f. sp. avenaria (Paa), P. avenaria f. sp. triticea (Pat1 and Pat3) and barley biotype P. nodorum (PN-b) were more closely related than PN-w and Phaeosphaeeria sp. (P-rye) from Poland. Based on the wc-1 deduced polypeptide sequences, P. avenaria f. sp. triticea (Pat2) from foxtail barley (Hordeum jubatum L.) was evolutionary well separated from the other cereal Phaeosphaeria pathogens

Forced flowering of pineapple (Ananas comosus cv. Tainon 17) in response to cold stress, ethephon and calcium carbide with or without activated charcoal

Ethylene, a gaseous plant hormone, is responsible for the initiation of reproductive development in pineapple. Reproductive development can be forced in pineapple (Ananas comosus var. comosus) throughout the year with ethylene. Inhibition of natural flowering initiation with aviglycine [(S)-trans-2-amino-4-(2-aminoethoxy)-3-butenoic acid hydrochloride], an inhibitor of ethylene biosynthesis, provides evidence that reproductive development in response to cold stress and short daylength is also in response to ethylene production. We studied the effect of cold treatment of pineapple on ethylene production and flower induction by applying a short-term cold stress to stem apices. Shoot apices of pineapple treated with ice crystals also produced twice as much ethylene as did those of control plants and significantly more than was produced by "D" leaf basal tissue. Moreover, pineapple plants treated four times with ice crystals or ice water were induced to flower under field conditions and the forcing efficiency, as evaluated by the percentages of inflorescence emergence and fruit harvest, was comparable to forcing with calcium carbide (CaC(2)) and ethephon. In another field experiment two applications of a 1.0% solution of CaC(2) or 0.15% ethephon applied at 48 h intervals was sufficient to force reproductive development of 'Tainon 17'. Furthermore, 0.5 or 1.0% solutions of CaC(2) supplemented with 0.5% activated charcoal (AC) significantly improved the forcing effectiveness of CaC(2). This could/would make it possible to reduce the number or concentration, or both, of CaC(2) required to effect forcing in pineapple

Anomalous structural evolution and glassy lattice in mixed-halide hybrid perovskites

Hybrid halide perovskites have emerged as highly promising photovoltaic materials because of their exceptional optoelectronic properties, which are often optimized via compositional engineering like mixing halides. It is well established that hybrid perovskites undergo a series of structural phase transitions as temperature varies. In this work, the authors find that phase transitions are substantially suppressed in mixed-halide hybrid perovskite single crystals of MAPbI3-xBrx (MA = CH3NH3+ and x = 1 or 2) using a complementary suite of diffraction and spectroscopic techniques. Furthermore, as a general behavior, multiple crystallographic phases coexist in mixed-halide perovskites over a wide temperature range, and a slightly distorted monoclinic phase, hitherto unreported for hybrid perovskites, is dominant at temperatures above 100 K. The anomalous structural evolution is correlated with the glassy behavior of organic cations and optical phonons in mixed-halide perovskites. This work demonstrates the complex interplay between composition engineering and lattice dynamics in hybrid perovskites, shedding new light on their unique properties.Peer ReviewedPostprint (published version

Measurement of K^+K^- production in two-photon collisions in the resonant-mass region

K^+K^- production in two-photon collisions has been studied using a large data sample of 67 fb^{-1} accumulated with the Belle detector at the KEKB asymmetric e^+e^- collider. We have measured the cross section for the process gamma gamma -> K^+ K^- for center-of-mass energies between 1.4 and 2.4 GeV, and found three new resonant structures in the energy region between 1.6 and 2.4 GeV. The angular differential cross sections have also been measured.Comment: 24 pages, 8 figures, to appear in Euro. Phys. Jour.

Search for neutrinoless decays tau -> 3l

We have searched for neutrinoless tau lepton decays into three charged leptons using an 87.1 fb^{-1} data sample collected with the Belle detector at the KEKB e^+e^- collider. Since the number of signal candidate events is compatible with that expected from the background, we set 90% confidence level upper limits on the branching fractions in the range (1.9-3.5) x 10^{-7} for various decay modes tau -> l l l where l represents e or mu.Comment: 12 pages, 4figure

Sequential LASER ART and CRISPR treatments eliminate HIV-1 in a subset of infected humanized mice

Elimination of HIV-1 requires clearance and removal of integrated proviral DNA from infected cells and tissues. Here, sequential long-acting slow-effective release antiviral therapy (LASER ART) and CRISPR-Cas9 demonstrate viral clearance in latent infectious reservoirs in HIV-1 infected humanized mice. HIV-1 subgenomic DNA fragments, spanning the long terminal repeats and the Gag gene, are excised in vivo, resulting in elimination of integrated proviral DNA; virus is not detected in blood, lymphoid tissue, bone marrow and brain by nested and digital-droplet PCR as well as RNAscope tests. No CRISPR-Cas9 mediated off-target effects are detected. Adoptive transfer of human immunocytes from dual treated, virus-free animals to uninfected humanized mice fails to produce infectious progeny virus. In contrast, HIV-1 is readily detected following sole LASER ART or CRISPR-Cas9 treatment. These data provide proof-of-concept that permanent viral elimination is possible