Genetic characterization of Porcine Circovirus 2 found in Malaysia

Background: Porcine circovirus type 2 is the primary etiological agent associated with a group of complex multi-factorial diseases classified as Porcine Circovirus Associated Diseases (PCVAD). Sporadic cases reported in Malaysia in 2007 caused major economic losses to the 2.2 billion Malaysian ringgit (MYR) (approximately 0.7 billion US dollar) swine industry. The objective of the present study was to determine the association between the presence of PCV2 and occurrences of PCVAD. Results: This study showed that 37 out of 42 farms sampled were positive for PCV2 using PCR screening. Thirteen whole genome of PCV2 isolates from pigs with typical PCVAD symptoms were successfully sequenced. These isolates shared 98.3-99.2% similarities with sequences of isolates from the Netherlands. All thirteen isolates fell into the same clade as PCV2b isolates from other countries. Amino acid sequence analysis of the putative capsid protein (ORF2) of the PCV2 revealed that there are three clusters found in Malaysia, namely cluster 1C and 1A/1B. Of interest, three of the isolates (isolates Mal 005, Mal 006 and Mal 010) had a proline substitution for arginine or isoleucine encoded at nt. position 88-89. Eight of the isolates had mutations at the C terminus of the putative capsid protein suggestive of higher pathogenicity which may account for the high reports of PCVAD clinical symptoms in 2007. Conclusion: Phylogenetic study suggests that there may be a link between movements of animals by import of breeders into the country being the route of entry of the virus. While it is not possible to eradicate the virus from commercial pigs, the swine industry in Malaysia can be safeguarded by control measures implemented throughout the country. These measures should include improved biosecurity, disease surveillance; vaccination as well as enforcement of regulations formulated to control and prevent the spread of this disease on a national scale

Non-Maxwellian Proton Velocity Distributions in Nonradiative Shocks

The Balmer line profiles of nonradiative supernova remnant shocks provide the means to measure the post-shock proton velocity distribution. While most analyses assume a Maxwellian velocity distribution, this is unlikely to be correct. In particular, neutral atoms that pass through the shock and become ionized downstream form a nonthermal distribution similar to that of pickup ions in the solar wind. We predict the H alpha line profiles from the combination of pickup protons and the ordinary shocked protons, and we consider the extent to which this distribution could affect the shock parameters derived from H alpha profiles. The Maxwellian assumption could lead to an underestimate of shock speed by up to about 15%. The isotropization of the pickup ion population generates wave energy, and we find that for the most favorable parameters this energy could significantly heat the thermal particles. Sufficiently accurate profiles could constrain the strength and direction of the magnetic field in the shocked plasma, and we discuss the distortions from a Gaussian profile to be expected in Tycho's supernova remnant.Comment: 13 pages, 6 figure

Characterization of the noise effect on weak synchronization

We investigate the noise effect on weak synchronization in two coupled identical one-dimensional ͑1D͒ maps. Due to the existence of positive local transverse Lyapunov exponents, the weakly stable synchronous chaotic attractor ͑SCA͒ becomes sensitive with respect to the variation of noise intensity. To quantitatively characterize such noise sensitivity, we introduce a quantifier, called the noise sensitivity exponent ͑NSE͒. For the case of bounded noise, the values of the NSE are found to be the same as those of the exponent characterizing a parameter sensitivity of the weakly stable SCA in presence of a parameter mismatch between the two 1D maps. Furthermore, it is found that the scaling exponent for the average time spent near the diagonal for both the bubbling and riddling cases occurring in the regime of weak synchronization is given by the reciprocal of the NSE, as in the parameter-mismatching case. Consequently, both the noise and parameter mismatch have the same effect on the scaling behavior of the average characteristic time

Statistical-Mechanical Measure of Stochastic Spiking Coherence in A Population of Inhibitory Subthreshold Neurons

By varying the noise intensity, we study stochastic spiking coherence (i.e., collective coherence between noise-induced neural spikings) in an inhibitory population of subthreshold neurons (which cannot fire spontaneously without noise). This stochastic spiking coherence may be well visualized in the raster plot of neural spikes. For a coherent case, partially-occupied "stripes" (composed of spikes and indicating collective coherence) are formed in the raster plot. This partial occupation occurs due to "stochastic spike skipping" which is well shown in the multi-peaked interspike interval histogram. The main purpose of our work is to quantitatively measure the degree of stochastic spiking coherence seen in the raster plot. We introduce a new spike-based coherence measure $M_s$ by considering the occupation pattern and the pacing pattern of spikes in the stripes. In particular, the pacing degree between spikes is determined in a statistical-mechanical way by quantifying the average contribution of (microscopic) individual spikes to the (macroscopic) ensemble-averaged global potential. This "statistical-mechanical" measure $M_s$ is in contrast to the conventional measures such as the "thermodynamic" order parameter (which concerns the time-averaged fluctuations of the macroscopic global potential), the "microscopic" correlation-based measure (based on the cross-correlation between the microscopic individual potentials), and the measures of precise spike timing (based on the peri-stimulus time histogram). In terms of $M_s$, we quantitatively characterize the stochastic spiking coherence, and find that $M_s$ reflects the degree of collective spiking coherence seen in the raster plot very well. Hence, the "statistical-mechanical" spike-based measure $M_s$ may be used usefully to quantify the degree of stochastic spiking coherence in a statistical-mechanical way.Comment: 16 pages, 5 figures, to appear in the J. Comput. Neurosc

Scheme for directly observing the non-commutativity of the position and the momentum operators with interference

Although non-commutativity of a certain set of quantum operators (e.g., creation/annihilation operators and Pauli spin operators) has been shown experimentally in recent years, the commu- tation relation for the position and the momentum operators has not been directly demonstrated to date. In this paper, we propose and analyze an experimental scheme for directly observing the non-commutativity of the position and the momentum operators using single-photon quantum in- terference. While the scheme is studied for the single-photon state as the input quantum state, the analysis applies equally to matter-wave interference, allowing a direct test of the position-momentum commutation relation with a massive particle.Comment: 4 pages, 5 figure

Design and Characterization of a Centrifugal Compressor Surge Test Rig

A detailed description of a new centrifugal compressor surge test rig is presented. The objective of the design and development of the rig is to study the surge phenomenon in centrifugal compression systems and to investigate a novel method of surge control by active magnetic bearing servo actuation of the impeller axial tip clearance. In this paper, we focus on the design, initial setup, and testing of the rig. The latter two include the commissioning of the rig and the experimental characterization of the compressor performance. The behavior of the compressor during surge is analyzed by driving the experimental setup into surge. Two fundamental frequencies, 21 Hz and 7 Hz, connected to the surge oscillation in the test rig are identified, and the observed instability is categorized according to the intensity of pressure fluctuations. Based on the test results, the excited pressure waves are clearly the result of surge and not stall. Also, they exhibit the characteristics of mild and classic surge instead of deep surge. Finally, the change in the compressor performance due to variation in the impeller tip clearance is experimentally examined, and the results support the potential of the tip clearance modulation for the control of compressor surge. This is the first such demonstration of the feasibility of surge control of a compressor using active magnetic bearings

Mitochondria-targeted antioxidant MitoQ ameliorates experimental mouse colitis by suppressing NLRP3 inflammasome-mediated inflammatory cytokines

BACKGROUND: MitoQ is a mitochondria-targeted derivative of the antioxidant ubiquinone, with antioxidant and anti-apoptotic functions. Reactive oxygen species are involved in many inflammatory diseases including inflammatory bowel disease. In this study, we assessed the therapeutic effects of MitoQ in a mouse model of experimental colitis and investigated the possible mechanisms underlying its effects on intestinal inflammation. METHODS: Reactive oxygen species levels and mitochondrial function were measured in blood mononuclear cells of patients with inflammatory bowel disease. The effects of MitoQ were evaluated in a dextran sulfate sodium-induced colitis mouse model. Clinical and pathological markers of disease severity and oxidative injury, and levels of inflammatory cytokines in mouse colonic tissue were measured. The effect of MitoQ on inflammatory cytokines released in the human macrophage-like cell line THP-1 was also analyzed. RESULTS: Cellular and mitochondrial reactive oxygen species levels in mononuclear cells were significantly higher in patients with inflammatory bowel disease (P <0.003, cellular reactive oxygen species; P <0.001, mitochondrial reactive oxygen species). MitoQ significantly ameliorated colitis in the dextran sulfate sodium-induced mouse model in vivo, reduced the increased oxidative stress response (malondialdehyde and 3-nitrotyrosine formation), and suppressed mitochondrial and histopathological injury by decreasing levels of inflammatory cytokines IL-1 beta and IL-18 (P <0.001 and P <0.01 respectively). By decreasing mitochondrial reactive oxygen species, MitoQ also suppressed activation of the NLRP3 inflammasome that was responsible for maturation of IL-1 beta and IL-18. In vitro studies demonstrated that MitoQ decreases IL-1 beta and IL-18 production in human THP-1 cells. CONCLUSION: Taken together, our results suggest that MitoQ may have potential as a novel therapeutic agent for the treatment of acute phases of inflammatory bowel disease

The Early Light Curve of a Type Ia Supernova 2021hpr in NGC 3147: Progenitor Constraints with the Companion Interaction Model

The progenitor system of Type Ia supernovae (SNe Ia) is expected to be a close binary system of a carbon/oxygen white dwarf (WD) and a non-degenerate star or another WD. Here, we present results from a high-cadence monitoring observation of SN 2021hpr in a spiral galaxy, NGC 3147, and constraints on the progenitor system based on its early multi-color light curve data. First, we classify SN 2021hpr as a normal SN Ia from its long-term photometric and spectroscopic data. More interestingly, we found a significant "early excess" in the light curve over a simple power-law $\sim t^{2}$ evolution. The early light curve evolves from blue to red and blue during the first week. To explain this, we fitted the early part of $BVRI$-band light curves with a two-component model of the ejecta-companion interaction and a simple power-law model. The early excess and its color can be explained by shock cooling emission due to a companion star having a radius of $8.84\pm0.58$$R_{\odot}$. We also examined HST pre-explosion images with no detection of a progenitor candidate, consistent with the above result. However, we could not detect signs of a significant amount of the stripped mass from a non-degenerate companion star ($\lesssim0.003\,M_{\odot}$ for H$\alpha$ emission). The early excess light in the multi-band light curve supports a non-degenerate companion in the progenitor system of SN 2021hpr. At the same time, the non-detection of emission lines opens a door for other methods to explain this event.Comment: 26 pages, 13 figures + appendix, Accepted for publication in Ap