Species-specific Real Time-PCR primers/probe systems to identify fish parasites of the genera Anisakis, Pseudoterranova and Hysterothylacium (Nematoda: Ascaridoidea)

Ascaridoid nematodes belonging to the genera Anisakis and Pseudoterranova are heteroxenous parasites, involving marine mammals as definitive hosts in their life-cycles, whereas crustaceans (krill), fish and squids acting as intermediate/paratenic hosts. These parasites are considered among the most important biological hazards present in “seafood” products. Indeed, larval stages of the Anisakis and Pseudoterranova have been reported as etiological agents of human infections (anisakidosis). We developed a primers/probe system for the identification of five species of anisakid nematodes belonging to the genera Anisakis (i.e. A. pegreffii and A. simplex (s. s.)), and Pseudoterranova (i.e. P. decipiens (s. s.), P. krabbei and P. bulbosa) to be used in a real time polymerase chain reaction (RT-PCR) with specific primers based on the mtDNA cox2 gene. Because those anisakid species could be also found in co-infection in some fish species with the raphidascarid nematode Hysterothylacium aduncum, a species-specific primer probe system to be used in RT-PCR for this nematode species was also developed. The detection limit and specificity of the primer/probe systems were evaluated for each of the six nematode species. Singleplex and multiplex RT-PCR protocols were defined and tested. The detection limit of the nematode species tissue was lower than 0.0006 ng/μl. Efficiency (E) of primers/probe systems developed was carried out by standard curve; E value varied between 2.015 and 2.11, with respect to a perfect reaction efficiency value of E = 2. Considering the sensibility and quantitative nature of the assays, the new primers/probe system may represent a useful tool for future basic and applied research that focuses on the identification of Anisakis spp., Pseudoterranova spp. and H. aduncum larvae in fish, even in co-infections, with a potential for application in fish farming, fish processing industries, fish markets, and food producers

Resurrection of genus Phocanema Myers, 1959, as a genus independent from Pseudoterranova Mozgovoĭ, 1953, for nematode species (Anisakidae) parasitic in pinnipeds and cetaceans, respectively

Species of the genus Pseudoterranova, infect kogiid cetaceans and pinnipeds. However, there is mounting molecular evidence that those from cetaceans and pinnipeds are not congeneric. Here, we provide further evidence of the non-monophyly of members of Pseudoterranova from phylogenetic analyses of the conserved nuclear LSU rDNA gene, entire ITS rDNA region and mtDNA cox2 gene, and identify morphological characters that may be used to distinguish the members of the two clades. We propose the resurrection of the genus Phocanema, with Ph. decipiens (sensu stricto) as the type species, to encompass Ph. decipiens, Ph. azarasi, Ph. bulbosa, Ph. cattani and Ph. krabbei, all parasites of pinnipeds. We propose to restrict the conception of genus Pseudoterranova, which now harbours two species infecting kogiid whales; Ps. kogiae (type species) and Ps. ceticola. Members of the genera Phocanema and Pseudoterranova differ by the shape and orientation of the lips, relative tail lengths, adult size, type of final host (pinniped vs. cetacean) and phylogenetic placement based on nuclear rDNA and mtDNA cox2 sequences.publishedVersio

Differences in Gene Expression Profiles of Seven Target Proteins in Third-Stage Larvae of Anisakis simplex (Sensu Stricto) by Sites of Infection in Blue Whiting (Micromesistius poutassou)

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Anisakid parasites (Nematoda: Anisakidae) in three commercially important gadid fish species from the southern Barents Sea, with emphasis on key infection drivers and spatial distribution within the hosts

Northeast Arctic cod, saithe and haddock are among the most important fisheries resources in Europe, largely shipped to various continental markets. The present study aimed to map the presence and distribution of larvae of parasitic nematodes in the Anisakidae family which are of socioeconomic and public health concern. Fishes were sourced from commercial catches during winter or spring in the southern Barents Sea. Samples of fish were inspected for nematodes using the UV-press method while anisakid species identification relied on sequencing of the mtDNA cox2 gene. Anisakis simplex (s.s.) was the most prevalent and abundant anisakid recorded, occurring at high infection levels in the viscera and flesh of cod and saithe, while being less abundant in haddock. Contracaecum osculatum (s.l.) larvae, not found in the fish flesh, showed moderate-to-high prevalence in saithe, haddock and cod, respectively. Most Pseudoterranova spp. larvae occurred at low-to-moderate prevalence, and low abundance, in the viscera (Pseudoterranova bulbosa) and flesh (Pseudoterranova decipiens (s.s.) and Pseudoterranova krabbei) of cod, only 2 P. decipiens (s.s.) appeared in the flesh of saithe. Body length was the single most important host-related factor to predict overall abundance of anisakid larvae in the fish species. The spatial distribution of Anisakis larvae in the fish flesh showed much higher abundances in the belly flaps than in the dorsal fillet parts. Trimming of the flesh by removing the belly flaps would reduce larval presence in the fillets of these gadid fish species by 86–91%.publishedVersio

Anisakis simplex (s.s.) larvae (Nematoda: Anisakidae) hidden in the mantle of European flying squid Todarodes sagittatus (Cephalopoda: Ommastrephidae) in NE Atlantic Ocean: Food safety implications

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Population genetic structure of the parasite Anisakis simplex (s. s.) collected in Clupea harengus L. from North East Atlantic fishing grounds

The Atlantic herring is a schooling, pelagic species that inhabits both sides of the North Atlantic Ocean. Herring stock identification is usually based on several approaches, including fish meristic characters, population genetic analysis and the use of parasite species composition. A total of 654 Anisakis spp. larvae collected from herring of four fishing grounds in the Norwegian Sea, Baltic Sea, North Sea, and the English Channel off the French coast, was identified to species level using diagnostic allozymes and sequence analysis of EF1 α−1 nDNA and the mtDNA cox2 genes. Population genetic differentiation of Anisakis simplex (s. s.) among the different fishing areas was estimated, at the intraspecific level, on the basis of mtDNA cox2 sequences analysis. Spatial comparison based on molecular variance analysis and Fst values was performed for the collected specimens (among regions). Haplotype network construction showed relevant differences in haplotype frequencies between samples of A. simplex (s. s.) from the different geographical areas. Results indicate a genetic sub-structuring of A. simplex (s. s.) obtained from herring in different areas, with the population from the Norwegian Sea being the most differentiated one, and with North Sea and Baltic Sea populations being most similar. The population genetic structure of A. simplex (s. s.) was in accordance with the herring population genetic structure throughout the host’s geographical range in the NE Atlantic. Results suggest that mtDNA cox2 is a suitable genetic marker for A. simplex (s. s.) population genetic structure analysis and a valuable tool to elucidate the herring stock structure in the NE Atlantic Ocean

Molecular characterization of the myoliquefactive fish parasite kudoa mirabilis (Cnidaria, kudoidae) from se Indian Ocean and its phylogenetic relationship with the kudoa thyrsites species complex

Myxosporean parasites of the genus Kudoa are fish parasites of great economic importance, as some species can affect the fish fillet quality by producing macroscopic cysts or generating post mortem myoliquefaction, commonly referred to as ‘soft flesh’. Kudoa mirabilis is a ‘soft flesh’-inducing species originally described based on morphology in the musculature of Trichiurus lepturus from the Indian Ocean. An integrative morphological and genetic characterization of K. mirabilis from the type host caught off the coast of Tanzania is here provided. The spores were stellate with four unequal polar capsules, showing similarities to Kudoa thyrsites. For comparative and validation purpose, K. mirabilis was compared morphologically and genetically with K. thyrsites reference isolates, including new obtained samples from the type host Thyrsites atun caught in the SE Atlantic Ocean. Morphological analyses of spores revealed key diagnostic characters clearly distinguishing the two Kudoa species. Phylogenetic analyses based on SSU and LSU rRNA genes demonstrated that K. mirabilis is a distinct and valid species, representing a sister group to a K. thyrsites subclade that comprises several isolates from Japan and one single isolate from South Africa. This finding raises questions about the true diversity likely hidden in the K. thyrsites complex.publishedVersio

Air-dried stockfish of Northeast Arctic cod do not carry viable anisakid nematodes

A total of 80 stockfish fillets of Northeast Arctic cod (Gadus morhua), traditionally open-air-dried in northern Norway, was examined for the presence and viability of larval parasitic nematodes of the family Anisakidae. Anisakids (particularly those belonging to genera Anisakis and Pseudoterranova) are of public health and economic concern globally, since they are responsible for an underestimated fish-borne zoonotic disease called anisakidosis (anisakiasis when caused by members of the Anisakis genus). Stockfish fillets were inspected for anisakids by candling and artificial (pepsin) digestion methodologies. The recovered nematodes (n = 342) were morphologically identified to genus level and their viability assessed. Subsamples of anisakid larvae (n = 31) were identified by molecular/genetic markers inferred from sequences analyses and real time polymerase chain reaction (RT-PCR) of the mtDNA cox2 gene, as Anisakis simplex sensu stricto (s.s.) (n = 29) and as Pseudoterranova decipiens (s.s.) (n = 2). This is the first time a RT-PCR primer/probe system was used to identify anisakids in a processed fishery product. Anisakis simplex (s.s.) larvae were found in 81% of the fillets, with average (range) 4 (0–35). In total, 338 A. simplex (s.s.) and 4 P. decipiens (s.s.) larvae, all dead, were recovered from the fillets. Anisakids were devitalised by the air-dried stockfish production process in 7.5 months (common stockfish production time from sea to plate). The results suggest that there is a negligible risk of acquiring anisakidosis from consumption of air-dried stockfish. Further research is recommended to evaluate if anisakids can be devitalised in five months (i.e. minimum stockfish production time). The health risk for sensitized consumers posed by the potential presence of anisakid allergens in stockfish needs to be assessed. This is the first report on the viability of anisakid larvae in an unsalted, naturally dried fishery product. Drying could represent an alternative and efficient treatment for the inactivation of anisakids in fishery products. Trimming of the belly flaps of highly parasitized cod may reduce the number of anisakids in stockfish by 74%.publishedVersio

Ascaridoid nematodes infecting commercially important marine fish and squid species from Bangladesh waters in the Bay of Bengal

Parasitic ascaridoid nematodes occur in a wide range of marine organisms across the globe. Some species of the anisakid family (Ascaridoidea: Anisakidae) can cause gastrointestinal disease in humans (i. e. anisakidosis). Despite their importance as potentially hazardous parasites, the occurrence and infection characteristics of ascaridoids are still poorly known from many host species and geographical areas. This study investigated the diversity and infection levels of ascaridoid parasites in various commercial fish and squid host species off Bangladesh. Fish and squid specimens were visually inspected for nematodes using the UV-press method. Nematodes were assigned to genus level based on morphology and identified by sequence analyses of the entire ITS region and partial 28S rDNA and mtDNA cox2 genes. Third-stage larvae (L3) of Anisakis typica occurred at low prevalence (P = 10% and 8%, respectively) in the viscera of Selar crumenophthalmus and Trichiurus lepturus, while Hysterothylacium amoyense occurred in the viscera of Sardinella fimbriata (P = 1%) and the viscera and muscle of Harpadon nehereus (P = 32%) and T. lepturus (P = 76%). Lappetascaris sp. Type A L3 occurred in the mantle of the squid Uroteuthis duvaucelii (P = 11%). Anisakis and Lappetascaris species, and H. amoyense were firstly identified in the Bay of Bengal. The potentially zoonotic A. typica was only found in fish viscera. Hysterothylacium amoyense and Lappetascaris sp., both generally regarded as non-zoonotic, occurred at low prevalence in the muscle or mantle of fish or squid, respectively. Since consumption of raw or lightly processed seafood seems to be rare in Bangladesh, the risk of acquiring anisakidosis from consuming fishery products from off Bangladesh appears to be low. Due to its reddish appearance, the visual presence of H. amoyense larvae in fish flesh may represent a food quality issue.publishedVersio

Long-term investigation of the ‘soft flesh’ condition in Northeast Atlantic mackerel induced by the myxosporean parasite Kudoa thyrsites (Cnidaria, Myxozoa): Temporal trends and new molecular epidemiological observations

Northeast Atlantic (NEA) mackerel (Scomber scombrus, Scombridae) represents an economically important target for the Norwegian pelagic fishing industry. Despite the commercial significance of NEA mackerel, little is known about the infections with the myxosporean parasite Kudoa thyrsites (Kudoidae). The parasite may cause post-mortem myoliquefaction of the fish skeletal muscle and therefore reduce the quality of the fish product. In this study, we examined ‘soft flesh’ occurrence in commercial size groups of NEA ‘autumn mackerel’ caught between 2007 and 2020, and investigated the prevalence and density of K. thyrsites (qPCR) and how they related to the occurrence of ‘soft flesh’. The present study is the first long-term investigation of the occurrence of K. thyrsites-induced ‘soft flesh’ in NEA mackerel. After appearing stable for over a decade, the ‘soft flesh’ occurrence increased three- to six-fold in 2019 and 2020. This increase, together with the findings that ‘soft flesh’ seems primarily to affect the commercially most valuable mackerel size group (>400 g), may have important implications for the fishing industry and the fishery management. Molecular analysis (qPCR) suggests that the prevalence of K. thyrsites is substantially higher than ‘soft flesh’ occurrence. The majority (87.4%, n = 76/87) of infected mackerel did not develop ‘soft flesh’ and only individuals with high parasite density in the musculature (12.6%, n = 11/87) showed the condition. Therefore, qPCR analyses should be used for estimating the prevalence of K. thyrsites in fish. The method may also be used to assess the risk of NEA mackerel to develop post-mortem ‘soft flesh’.publishedVersio