Phylogeographic Structure of the Fossorial Long-Clawed Mouse Chelemys macronyx (Cricetidae: Sigmodontinae)

We present a phylogeographic study of the fossorial sigmodontine mouse Chelemys macronyx. Analyses were based on mitochondrial DNA sequences of specimens collected over most of distributional range of the species. Results showed that C. macronyx has a shallow genealogy that is geographically structured into 2 main clades: one in the northern part of the species distribution, at high-Andean localities in the Argentinean provinces of Mendoza and northern Neuquén, and the other covering the majority of its distributional range at medium- to low-elevation localities from northwestern Neuquén to the south. The northern clade appears to have been demographically stable, while the southern clade presents signals of demographic expansion. These results suggest that current genetic variation of C. macronyx may have originated from 2 refugia.Fil: Alarcón, Oriet. Universidad de Concepción; ChileFil: D'elía, Guillermo. Universidad Austral de Chile; Chile. Centro de Investigación en Ecosistemas de la Patagonia; ChileFil: Lessa, Enrique P.. Universidad de la República. Facultad de Ciencias; UruguayFil: Pardiñas, Ulises Francisco J.. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico; Argentin

Dispersal and population structure at different spatial scales in the subterranean rodent Ctenomys australis

This study was funded by grants from Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET, PIP5838), Agencia de Promoción Científica y Tecnológica de la Argentina (PICTO1-423, BID-1728/OC-AR), and the programme ECOS-Sud France/Argentina (A05B01).Background: The population genetic structure of subterranean rodent species is strongly affected by demographic (e.g. rates of dispersal and social structure) and stochastic factors (e.g. random genetic drift among subpopulations and habitat fragmentation). In particular, gene flow estimates at different spatial scales are essential to understand genetic differentiation among populations of a species living in a highly fragmented landscape. Ctenomys australis (the sand dune tuco-tuco) is a territorial subterranean rodent that inhabits a relatively secure, permanently sealed burrow system, occurring in sand dune habitats on the coastal landscape in the south-east of Buenos Aires province, Argentina. Currently, this habitat is threatened by urban development and forestry and, therefore, the survival of this endemic species is at risk. Here, we assess population genetic structure and patterns of dispersal among individuals of this species at different spatial scales using 8 polymorphic microsatellite loci. Furthermore, we evaluate the relative importance of sex and habitat configuration in modulating the dispersal patterns at these geographical scales. Results: Our results show that dispersal in C. australis is not restricted at regional spatial scales (similar to 4 km). Assignment tests revealed significant population substructure within the study area, providing support for the presence of two subpopulations from three original sampling sites. Finally, male-biased dispersal was found in the Western side of our study area, but in the Eastern side no apparent philopatric pattern was found, suggesting that in a more continuous habitat males might move longer distances than females. Conclusions: Overall, the assignment-based approaches were able to detect population substructure at fine geographical scales. Additionally, the maintenance of a significant genetic structure at regional (similar to 4 km) and small (less than 1 km) spatial scales despite apparently moderate to high levels of gene flow between local sampling sites could not be explained simply by the linear distance among them. On the whole, our results support the hypothesis that males disperse more frequently than females; however they do not provide support for strict philopatry within females.Publisher PDFPeer reviewe

Evolution of morphological adaptations for digging in living and extinct ctenomyid and octodontid rodents

To examine the evolution of burrowing specializations in the sister families Octodontidae and Ctenomyidae (Rodentia: Caviomorpha), we produced a synthetic phylogeny (supertree), combining both molecular and morphological phylogenies, and including both fossil and extant genera. We mapped morphological specializations of the digging apparatus onto our phylogenetic hypothesis and attempted to match morphological diversity with information on the ecology and behaviour of octodontoid taxa. Burrowing for sheltering and rearing is the rule among octodontids and ctenomyids, and adaptations for digging have been known from the Early Pliocene onward. However, only a few taxa have evolved fully subterranean habits. Scratch-digging is widespread among both semifossorial and fully subterranean lineages, and morphological changes associated with scratch-digging are not restricted to subterranean lineages. By contrast, various adaptations for chisel-tooth digging are restricted to some subterranean lineages and are combined differently in the octodontid Spalacopus, the fossil ctenomyid Eucelophorus, and some living Ctenomys. Some octodontid taxa are able to dig complex burrows in spite of having no substantial changes in musculoskeletal attributes. Hence, we suggest that, during the early evolution of those branches giving rise to fully subterranean ctenomyids and octodontids, a change in behaviour probably preceded the origin of structural adaptations.Facultad de Ciencias Naturales y Muse

Evolution of morphological adaptations for digging in living and extinct ctenomyid and octodontid rodents

To examine the evolution of burrowing specializations in the sister families Octodontidae and Ctenomyidae (Rodentia: Caviomorpha), we produced a synthetic phylogeny (supertree), combining both molecular and morphological phylogenies, and including both fossil and extant genera. We mapped morphological specializations of the digging apparatus onto our phylogenetic hypothesis and attempted to match morphological diversity with information on the ecology and behaviour of octodontoid taxa. Burrowing for sheltering and rearing is the rule among octodontids and ctenomyids, and adaptations for digging have been known from the Early Pliocene onward. However, only a few taxa have evolved fully subterranean habits. Scratch-digging is widespread among both semifossorial and fully subterranean lineages, and morphological changes associated with scratch-digging are not restricted to subterranean lineages. By contrast, various adaptations for chisel-tooth digging are restricted to some subterranean lineages and are combined differently in the octodontid Spalacopus, the fossil ctenomyid Eucelophorus, and some living Ctenomys. Some octodontid taxa are able to dig complex burrows in spite of having no substantial changes in musculoskeletal attributes. Hence, we suggest that, during the early evolution of those branches giving rise to fully subterranean ctenomyids and octodontids, a change in behaviour probably preceded the origin of structural adaptations.Facultad de Ciencias Naturales y Muse

Evolution of morphological adaptations for digging in living and extinct ctenomyid and octodontid rodents

To examine the evolution of burrowing specializations in the sister families Octodontidae and Ctenomyidae (Rodentia: Caviomorpha), we produced a synthetic phylogeny (supertree), combining both molecular and morphological phylogenies, and including both fossil and extant genera. We mapped morphological specializations of the digging apparatus onto our phylogenetic hypothesis and attempted to match morphological diversity with information on the ecology and behaviour of octodontoid taxa. Burrowing for sheltering and rearing is the rule among octodontids and ctenomyids, and adaptations for digging have been known from the Early Pliocene onward. However, only a few taxa have evolved fully subterranean habits. Scratch-digging is widespread among both semifossorial and fully subterranean lineages, and morphological changes associated with scratch-digging are not restricted to subterranean lineages. By contrast, various adaptations for chisel-tooth digging are restricted to some subterranean lineages and are combined differently in the octodontid Spalacopus, the fossil ctenomyid Eucelophorus, and some living Ctenomys. Some octodontid taxa are able to dig complex burrows in spite of having no substantial changes in musculoskeletal attributes. Hence, we suggest that, during the early evolution of those branches giving rise to fully subterranean ctenomyids and octodontids, a change in behaviour probably preceded the origin of structural adaptations.Facultad de Ciencias Naturales y Muse

Leveraging natural history biorepositories as a global, decentralized, pathogen surveillance network

The Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) pandemic reveals a major gap in global biosecurity infrastructure: a lack of publicly available biological samples representative across space, time, and taxonomic diversity. The shortfall, in this case for vertebrates, prevents accurate and rapid identification and monitoring of emerging pathogens and their reservoir host(s) and precludes extended investigation of ecological, evolutionary, and environmental associations that lead to human infection or spillover. Natural history museum biorepositories form the backbone of a critically needed, decentralized, global network for zoonotic pathogen surveillance, yet this infrastructure remains marginally developed, underutilized, underfunded, and disconnected from public health initiatives. Proactive detection and mitigation for emerging infectious diseases (EIDs) requires expanded biodiversity infrastructure and training (particularly in biodiverse and lower income countries) and new communication pipelines that connect biorepositories and biomedical communities. To this end, we highlight a novel adaptation of Project ECHO’s virtual community of practice model: Museums and Emerging Pathogens in the Americas (MEPA). MEPA is a virtual network aimed at fostering communication, coordination, and collaborative problem-solving among pathogen researchers, public health officials, and biorepositories in the Americas. MEPA now acts as a model of effective international, interdisciplinary collaboration that can and should be replicated in other biodiversity hotspots. We encourage deposition of wildlife specimens and associated data with public biorepositories, regardless of original collection purpose, and urge biorepositories to embrace new specimen sources, types, and uses to maximize strategic growth and utility for EID research. Taxonomically, geographically, and temporally deep biorepository archives serve as the foundation of a proactive and increasingly predictive approach to zoonotic spillover, risk assessment, and threat mitigation

Dispersal and population structure at different spatial scales in the subterranean rodent Ctenomys australis

<p>Abstract</p> <p><b>Background</b></p> <p>The population genetic structure of subterranean rodent species is strongly affected by demographic (e.g. rates of dispersal and social structure) and stochastic factors (e.g. random genetic drift among subpopulations and habitat fragmentation). In particular, gene flow estimates at different spatial scales are essential to understand genetic differentiation among populations of a species living in a highly fragmented landscape. <it>Ctenomys australis </it>(the sand dune tuco-tuco) is a territorial subterranean rodent that inhabits a relatively secure, permanently sealed burrow system, occurring in sand dune habitats on the coastal landscape in the south-east of Buenos Aires province, Argentina. Currently, this habitat is threatened by urban development and forestry and, therefore, the survival of this endemic species is at risk. Here, we assess population genetic structure and patterns of dispersal among individuals of this species at different spatial scales using 8 polymorphic microsatellite loci. Furthermore, we evaluate the relative importance of sex and habitat configuration in modulating the dispersal patterns at these geographical scales.</p> <p>Results</p> <p>Our results show that dispersal in <it>C. australis </it>is not restricted at regional spatial scales (~ 4 km). Assignment tests revealed significant population substructure within the study area, providing support for the presence of two subpopulations from three original sampling sites. Finally, male-biased dispersal was found in the Western side of our study area, but in the Eastern side no apparent philopatric pattern was found, suggesting that in a more continuous habitat males might move longer distances than females.</p> <p>Conclusions</p> <p>Overall, the assignment-based approaches were able to detect population substructure at fine geographical scales. Additionally, the maintenance of a significant genetic structure at regional (~ 4 km) and small (less than 1 km) spatial scales despite apparently moderate to high levels of gene flow between local sampling sites could not be explained simply by the linear distance among them. On the whole, our results support the hypothesis that males disperse more frequently than females; however they do not provide support for strict philopatry within females.</p

Vigencia del Darwinismo Cogency of Darwinism

En este ensayo se presenta una revisión histórica del signifcado y legado del darwinismo, con énfasis en el último siglo. La principal conclusión es que la visión darwiniana de la evolución, con las modifcaciones requeridas para dar cuenta de los grandes desarrollos de la disciplina, se ha impuesto y mantiene vigencia en nuestros días. En particular, el papel del azar, la evolución como proceso de “descendencia con modifcación” a lo largo de diversas ramas del árbol de la vida, el pensamiento poblacional, el gradualismo y la selección natural son los principales legados de la obra de Darwin. En el caso de la selección, entendida como proceso poblacional de naturaleza estocástica, se propone que la visión de su papel ha sufrido dos procesos de expansión a partir del énfasis de Darwin en la selección direccional positiva. Una primera ampliación se consolidó en la primera mitad del siglo XX con el reconocimiento del importante papel que cumple la selección purifcadora, así como la selección positiva débil. Una segunda ampliación se debió al reconocimiento de la variación neutral y de la selección contra variantes ligeramente deletéreas. En suma, la teoría de la selección actual contempla todo el espectro de efectos posible de la variación genética sobre la efcacia darwiniana. En el contencioso campo de la macroevolución, tanto los procesos de especiación como las explicaciones de los patrones macroevolutivos han sido dominados de modo creciente por la microevolución, con un reconocimiento creciente del papel de la selección positiva. Sin embargo, la elaboración de una visión jerárquica de la individualidad biológica ha sido uno de los legados importantes de las últimas décadas. El “pensar en base a árboles”, tan dominante en el evolucionismo actual, representa una realización moderna de la visión darwiniana de la evolución.<br>This essay presents a review of the historical signifcance and legacy of Darwinism, with emphasis on the last 100 years. The main conclusion is that the Darwinian view of evolution has prevailed and maintains its validity, with the changes required to account for the substantial developments of the discipline. In particular, the role of chance, evolution as a process of “descent with modifcation” along many branches of the tree of life, populational thinking, gradualism, and natural selection constitute the main legacy of Darwin’s work. In the case of selection, understood as a stochastic process, I propose that views about its role have suffered two processes of expansion from Darwin’s emphasis on positive, directional selection. A frst expansion took place during the frst half of the 20th century, with the recognition of the important role played by purifying, as well as weak positive selection. A second expansion was due to the recognition of neutral variation and of selection against weakly deleterious variants. In sum, selection theory contemplates the entire spectrum of effects of genetic variation on Darwinian ftness. In the contentious feld of macroevolution, both the processes of speciation and the explanations of macroevolutionary patterns have been increasingly dominated by microevolution, with a growing recognition of the role of positive selection. However, the development of a hierarchical view of biological individuality has been one of the important legacies of the last decades. “Tree thinking”, so dominant in modern evolutionism, represents a modern realization of the Darwinian view of evolution