Dynamics of Alpha-Helix Formation in the CSAW Model

We study the folding dynamics of polyalanine (Ala$_{20}$), a protein fragment with 20 residues whose native state is a single alpha helix. We use the CSAW model (conditioned self-avoiding walk), which treats the protein molecule as a chain in Brownian motion, with interactions that include hydrophobic forces and internal hydrogen bonding. We find that large scale structures form before small scale structures, and obtain the relevant relaxation times. We find that helix nucleation occurs at two separate points on the protein chain. The evolution of small and large scale structures involve different mechanisms. While the former can be describe by rate equations governing the growth of helical content, the latter is akin to the relaxation of an elastic solid.Comment: 18 pages, 10 figure

A learning approach to 3d object representation for classification

Abstract. In this paper we describe our 3D object signature for 3D object classification. The signature is based on a learning approach that finds salient points on a 3D object and represent these points in a 2D spatial map based on a longitude-latitude transformation. Experimental results show high classification rates on both pose-normalized and rotated objects and include a study on classification accuracy as a function of number of rotations in the training set

Neutron beam test of CsI crystal for dark matter search

We have studied the response of Tl-doped and Na-doped CsI crystals to nuclear recoils and $\gamma$'s below 10 keV. The response of CsI crystals to nuclear recoil was studied with mono-energetic neutrons produced by the $^3$H(p,n)$^3$He reaction. This was compared to the response to Compton electrons scattered by 662 keV $\gamma$-ray. Pulse shape discrimination between the response to these $\gamma$'s and nuclear recoils was studied, and quality factors were estimated. The quenching factors for nuclear recoils were derived for both CsI(Na) and CsI(Tl) crystals.Comment: 21pages, 14figures, submitted to NIM

Effects of various additives to enhance growth performance, blood profiles, and reduce malodour emissions in growing pigs

Experiment 1 was a feeding trial in which 75 (Landrace ⅹ Yorkshire) ⅹ Duroc pigs with average initial bodyweight (BW) of 26 ± 1 kg were used. It was assigned to three pigs/pen and five pens/treatment. Experiment 2 was a metabolic trial in which 25 (LandraceⅹYorkshire)ⅹDuroc pigs with average initial bodyweight (BW) of 36 ± 1 kg were used. The basal diet consisted of maize (57.71 %), soybean meal (32.45 %), and wheat bran (5 %). Treatments consisted of i) CON (control diet); ii) OE (organic acid + essential oils) (Aviplus-S®), that is, CON + 0.05 % OE; iii) OC (organic charcoal) (Olga Black®), that is, CON + 0.1 % OC; iv) AE (anise extracts) (RESQ®), that is, CON + 0.015 % AE; and v) PB (probiotics) (Bonvital®), that is, CON + 0.1 % PB. Average daily gain (ADG) and gain/feed ratio (G : F) were significantly higher in the OE and AE groups than in the others. Average daily feed intake (ADFI) for OE, OC, and AE treatments was significantly higher than that for CON and PB treatments. Dry matter (DM) digestibility was significantly higher in AE than CON. Crude protein (CP) was significantly higher in OE, AE, and PB than CON. CON and other treatments did not cause significant differences in blood l-density lipoprotein (LDL), and glucose. NH3 emissions were significantly lower in all treated groups than in CON. Among the treatments, NH3 emissions were lowest in OE and AE. H2S emissions were significantly lower in OE, AE, and PB than in CON. Among the treatments, OE and AE were most effective at reducing H2S emissions. The emissions of volatile fatty acids (VFAs) showed no significant difference between treatments and CON. In conclusion, this experiment was shown to be more effective on growth performance, malodour emission, blood profiles, and nutrient digestibility in OE and AE than other additives.Keywords: Digestibility, feed, influence, odour, supplementation, swin

Illuminating interfaces between phases of a U(1) x U(1) gauge theory

We study reflection and transmission of light at the interface between different phases of a U(1) x U(1) gauge theory. On each side of the interface, one can choose a basis so that one generator is free (allowing propagation of light), and the orthogonal one may be free, Higgsed, or confined. However, the basis on one side will in general be rotated relative to the basis on the other by some angle alpha. We calculate reflection and transmission coefficients for both polarizations of light and all 8 types of boundary, for arbitrary alpha. We find that an observer measuring the behavior of light beams at the boundary would be able to distinguish 4 different types of boundary, and we show how the remaining ambiguity arises from the principle of complementarity (indistinguishability of confined and Higgs phases) which leaves observables invariant under a global electric/magnetic duality transformation. We also explain the seemingly paradoxical behavior of Higgs/Higgs and confined/confined boundaries, and clarify some previous arguments that confinement must involve magnetic monopole condensation.Comment: RevTeX, 12 page

Orbital effect of in-plane magnetic field on quantum transport in chaotic lateral dots

We show how the in-plane magnetic field, which breaks time-reversal and rotational symmetries of the orbital motion of electrons in a heterostructure due to the momentum-dependent inter-subband mixing, affects weak localisation correction to conductance of a large-area chaotic lateral quantum dot and parameteric dependences of universal conductance fluctuations in it.Comment: 4 pages with a figur

Towards an Asymptotic-Safety Scenario for Chiral Yukawa Systems

We search for asymptotic safety in a Yukawa system with a chiral $U(N_L)_L\otimes U(1)_R$ symmetry, serving as a toy model for the standard-model Higgs sector. Using the functional RG as a nonperturbative tool, the leading-order derivative expansion exhibits admissible non-Ga\ssian fixed-points for $1 \leq N_L \leq 57$ which arise from a conformal threshold behavior induced by self-balanced boson-fermion fluctuations. If present in the full theory, the fixed-point would solve the triviality problem. Moreover, as one fixed point has only one relevant direction even with a reduced hierarchy problem, the Higgs mass as well as the top mass are a prediction of the theory in terms of the Higgs vacuum expectation value. In our toy model, the fixed point is destabilized at higher order due to massless Goldstone and fermion fluctuations, which are particular to our model and have no analogue in the standard model.Comment: 16 pages, 8 figure

Strong nonradiative energy transfer from the nanopillars of quantum wells to quantum dots: Efficient excitonic color conversion for light emitting diodes

Efficient nonradiative energy transfer is observed from nanopillars of InGaN/GaN quantum wells to colloidal CdSe/ZnS quantum dots up to 83% efficiency. Nanostructured architecture is shown to promote excitonic color conversion for LED applications. © OSA 2012