BioWord: A sequence manipulation suite for Microsoft Word

Abstract Background The ability to manipulate, edit and process DNA and protein sequences has rapidly become a necessary skill for practicing biologists across a wide swath of disciplines. In spite of this, most everyday sequence manipulation tools are distributed across several programs and web servers, sometimes requiring installation and typically involving frequent switching between applications. To address this problem, here we have developed BioWord, a macro-enabled self-installing template for Microsoft Word documents that integrates an extensive suite of DNA and protein sequence manipulation tools. Results BioWord is distributed as a single macro-enabled template that self-installs with a single click. After installation, BioWord will open as a tab in the Office ribbon. Biologists can then easily manipulate DNA and protein sequences using a familiar interface and minimize the need to switch between applications. Beyond simple sequence manipulation, BioWord integrates functionality ranging from dyad search and consensus logos to motif discovery and pair-wise alignment. Written in Visual Basic for Applications (VBA) as an open source, object-oriented project, BioWord allows users with varying programming experience to expand and customize the program to better meet their own needs. Conclusions BioWord integrates a powerful set of tools for biological sequence manipulation within a handy, user-friendly tab in a widely used word processing software package. The use of a simple scripting language and an object-oriented scheme facilitates customization by users and provides a very accessible educational platform for introducing students to basic bioinformatics algorithms.</p

Comparing clinician descriptions of frailty and geriatric syndromes using electronic health records: a retrospective cohort study

Abstract Background Geriatric syndromes, including frailty, are common in older adults and associated with adverse outcomes. We compared patients described in clinical notes as “frail” to other older adults with respect to geriatric syndrome burden and healthcare utilization. Methods We conducted a retrospective cohort study on 18,341 Medicare Advantage enrollees aged 65+ (members of a large nonprofit medical group in Massachusetts), analyzing up to three years of administrative claims and structured and unstructured electronic health record (EHR) data. We determined the presence of ten geriatric syndromes (falls, malnutrition, dementia, severe urinary control issues, absence of fecal control, visual impairment, walking difficulty, pressure ulcers, lack of social support, and weight loss) from claims and EHR data, and the presence of frailty descriptions in clinical notes with a pattern-matching natural language processing (NLP) algorithm. Results Of the 18,341 patients, we found that 2202 (12%) were described as “frail” in clinical notes. “Frail” patients were older (82.3 ± 6.8 vs 75.9 ± 5.9, p < .001) and had higher rates of healthcare utilization, including number of inpatient hospitalizations and emergency department visits, than the rest of the population (p < .001). “Frail” patients had on average 4.85 ± 1.72 of the ten geriatric syndromes studied, while non-frail patients had 2.35 ± 1.71 (p = .013). Falls, walking difficulty, malnutrition, weight loss, lack of social support and dementia were more highly correlated with frailty descriptions. The most common geriatric syndrome pattern among “frail” patients was a combination of walking difficulty, lack of social support, falls, and weight loss. Conclusions Patients identified as “frail” by providers in clinical notes have higher rates of healthcare utilization and more geriatric syndromes than other patients. Certain geriatric syndromes were more highly correlated with descriptions of frailty than others

RIvaroxaban and VAscular Surgery (RIVAS): insights from a multicenter, worldwide web-based survey

no abstract availabl

Correction to: Major adverse cardiovascular events in non-valvular atrial fibrillation with chronic obstructive pulmonary disease: the ARAPACIS study

none372In the original publication, one of the ARAPACIS collaborators Dr. “Leonardo Di Gennaro” name has been erroneously mentioned as “Leonardo De Gennaro”.noneRaparelli V.; Pastori D.; Pignataro S.F.; Vestri A.R.; Pignatelli P.; Cangemi R.; Proietti M.; Davi G.; Hiatt W.R.; Lip G.Y.H.; Corazza G.R.; Perticone F.; Violi F.; Basili S.; Alessandri C.; Serviddio G.; Palange P.; Greco E.; Bruno G.; Averna M.; Giammanco A.; Sposito P.; DeCristofaro R.; Carulli L.; DiGennaro L.; Pellegrini E.; Cominacini L.; Mozzini C.; Pasini A.F.; Sprovieri M.; Spagnuolo V.; Cerqua G.; Cerasola G.; Mule G.; Barbagallo M.; Lo Sciuto S.; Monteverde A.; Saitta A.; Lo Gullo A.; Malatino L.; Cilia C.; Terranova V.; Pisano M.; Pinto A.; DiRaimondo D.; Tuttolomondo A.; Conigliaro R.; Signorelli S.; DePalma D.; Galderisi M.; Cudemo G.; Galletti F.; Fazio V.; DeLuca N.; Meccariello A.; Caputo D.; DeDonato M.T.; Iannuzi A.; Bresciani A.; Giunta R.; Utili R.; Iorio V.; Adinolfi L.E.; Sellitto C.; Iuliano N.; Bellis P.; Tirelli P.; Sacerdoti D.; Vanni D.; Iuliano L.; Ciacciarelli M.; Pacelli A.; Palazzuoli A.; Cacciafesta M.; Gueli N.; Lo Iacono C.; Brusco S.; Verrusio W.; Nobili L.; Tarquinio N.; Pellegrini F.; Vincentelli G.M.; Ravallese F.; Santini C.; Letizia C.; Petramala L.; Zinnamosca L.; Minisola S.; Cilli M.; Colangelo L.; Falaschi P.; Martocchia A.; Pastore F.; Bertazzoni G.; Attalla El Halabieh E.; Paradiso M.; Lizzi E.M.; Timmi S.; Battisti P.; Cerci S.; Ciavolella M.; DiVeroli C.; Malci F.; DeCiocchis A.; Abate D.; Castellino P.; Zanoli L.; Fidone F.; Mannarino E.; Pasqualini L.; Oliverio G.; Pende A.; Artom N.; Ricchio R.; Fimognari F.L.; Alletto M.; Messina S.; Sesti G.; Arturi F.; Succurro E.; Fiorentino T.V.; Pedace E.; Scarpino P.E.; Carullo G.; Maio R.; Sciacqua A.; Frugiuele P.; Battaglia G.; Atzori S.; Delitala G.; Angelucci E.; Sestili S.; Traisci G.; DeFeudis L.; DiMichele D.; Fava A.; Balsano C.; DeCiantis P.; Desideri G.; Camerota A.; Mezzetti M.; Gresele P.; Vedovati C.; Fierro T.; Puccetti L.; Bertolotti M.; Mussi C.; Boddi M.; Savino A.; Contri S.; Degl'Innocenti G.; Saller A.; Fabris F.; Pesavento R.; Filippi L.; Vedovetto V.; Puato M.; Treleani M.; DeLuca E.; DeZaiacomo F.; Giantin V.; Semplicini A.; Minuz P.; Romano S.; Fantin F.; Manica A.; Stockner I.; Pattis P.; Gutmann B.; Catena C.; Colussi G.; Sechi L.A.; Annoni G.; Bruni A.A.; Castagna A.; Spinelli D.; Miceli E.; Padula D.; Schinco G.; Spreafico S.; Secchi B.; Vanoli M.; Casella G.; Pulixi E.A.; Sansone L.; Serra M.G.; Longo S.; Antonaci S.; Belfiore A.; Frualdo M.; Palasciano G.; Ricci L.; Ventrella F.; Bianco C.; Santovito D.; Cipollone F.; Nicolai S.; Salvati F.; Rini G.B.; Scozzari F.; Muiesan M.L.; Salvetti M.; Bazza A.; Picardi A.; Vespasiani-Gentilucci U.; DeVincentis A.; Cosio P.; Terzolo M.; Madaffari B.; Parasporo B.; Fenoglio L.; Bracco C.; Melchio R.; Gentili T.; Salvi A.; Nitti C.; Gabrielli A.; Martino G.P.; Capucci A.; Brambatti M.; Sparagna A.; Tirotta D.; Andreozzi P.; Ettorre E.; Viscogliosi G.; Servello A.; Musumeci M.; Delfino M.; Giorgi A.; Glorioso N.; Melis G.; Marras G.; Matta M.; Sacco A.; Stellitano E.; Scordo A.; Russo F.; Caruso A.A.; Porreca E.; Tana M.; Ferri C.; Cheli P.; Portincasa P.; Muscianisi G.; Giordani S.; Stanghellini V.; Sabba C.; Mancuso G.; Bartone M.; Calipari D.; Arcidiacono G.; Bellanuova I.; Ferraro M.; Marigliano G.; Cozzolino D.; Lampitella A.; Acri V.; Galasso D.; Mazzei F.; Buratti A.; Galasso S.; Porta M.; Brizzi M.F.; Fattorini A.; Sampietro F.; D'Angelo A.; Manfredini R.; Pala M.; Fabbian F.; Moroni C.; Valente L.; Lopreiato F.; Parente F.; Granata M.; Moia M.; Braham S.; Rossi M.; Pesce M.; Gentile A.; Catozzo V.; Baciarello G.; Cosimati A.; Ageno W.; Rancan E.; Guasti L.; Ciccaglioni A.; Negri S.; Polselli M.; Prisco D.; Marcucci R.; Ferro D.; Perri L.; Saliola M.; DelBen M.; Angelico F.; Baratta F.; Migliacci R.; Porciello G.; Corrao S.; Napoleone L.; Talerico G.; Amoroso D.; Romiti G.F.; Ruscio E.; Toriello F.; Sperduti N.; Todisco T.; DiTanna G.; Sacchetti M.L.; Puddu P.E.; Farcomeni A.; Anzaldi M.; Bazzini C.; Bianchi P.I.; Boari B.; Buonauro A.; Butta C.; Buzzetti E.; Calabria S.; Capeci W.; Caradio F.; Carleo P.; Carrabba M.D.; Castorani L.; Cecchetto L.; Cicco S.; Cimini C.; Colombo B.M.; De Giorgi A.; DeVuono S.; DelCorso L.; Denegri A.; DiGiosia P.; Durante Mangoni E.; Falsetti L.; Forgione A.; Giorgini P.; Grassi D.; Grembiale A.; Hijazi D.; Iamele L.; Lorusso G.; Marchese A.; Marra A.M.; Masala M.; Miceli G.; Montebianco Abenavoli L.; Murgia G.; Naccarato P.; Pattoneri P.; Perego F.; Pesce P.; Piano S.; Pinna M.; Pinto D.; Pretti V.; Pucci G.; Salinaro F.; Salzano A.; Santilli F.; Scarpini F.; Scicali R.; Sirico D.; Suppressa P.; Talia M.; Tassone E.J.; Torres D.; Vazzana N.; Vecchio C.R.; Vidili G.; Vitale F.; Zaccone V.Raparelli, V.; Pastori, D.; Pignataro, S. F.; Vestri, A. R.; Pignatelli, P.; Cangemi, R.; Proietti, M.; Davi, G.; Hiatt, W. R.; Lip, G. Y. H.; Corazza, G. R.; Perticone, F.; Violi, F.; Basili, S.; Alessandri, C.; Serviddio, G.; Palange, P.; Greco, E.; Bruno, G.; Averna, M.; Giammanco, A.; Sposito, P.; Decristofaro, R.; Carulli, L.; Digennaro, L.; Pellegrini, E.; Cominacini, L.; Mozzini, C.; Pasini, A. F.; Sprovieri, M.; Spagnuolo, V.; Cerqua, G.; Cerasola, G.; Mule, G.; Barbagallo, M.; Lo Sciuto, S.; Monteverde, A.; Saitta, A.; Lo Gullo, A.; Malatino, L.; Cilia, C.; Terranova, V.; Pisano, M.; Pinto, A.; Diraimondo, D.; Tuttolomondo, A.; Conigliaro, R.; Signorelli, S.; Depalma, D.; Galderisi, M.; Cudemo, G.; Galletti, F.; Fazio, V.; Deluca, N.; Meccariello, A.; Caputo, D.; Dedonato, M. T.; Iannuzi, A.; Bresciani, A.; Giunta, R.; Utili, R.; Iorio, V.; Adinolfi, L. E.; Sellitto, C.; Iuliano, N.; Bellis, P.; Tirelli, P.; Sacerdoti, D.; Vanni, D.; Iuliano, L.; Ciacciarelli, M.; Pacelli, A.; Palazzuoli, A.; Cacciafesta, M.; Gueli, N.; Lo Iacono, C.; Brusco, S.; Verrusio, W.; Nobili, L.; Tarquinio, N.; Pellegrini, F.; Vincentelli, G. M.; Ravallese, F.; Santini, C.; Letizia, C.; Petramala, L.; Zinnamosca, L.; Minisola, S.; Cilli, M.; Colangelo, L.; Falaschi, P.; Martocchia, A.; Pastore, F.; Bertazzoni, G.; Attalla El Halabieh, E.; Paradiso, M.; Lizzi, E. M.; Timmi, S.; Battisti, P.; Cerci, S.; Ciavolella, M.; Diveroli, C.; Malci, F.; Deciocchis, A.; Abate, D.; Castellino, P.; Zanoli, L.; Fidone, F.; Mannarino, E.; Pasqualini, L.; Oliverio, G.; Pende, A.; Artom, N.; Ricchio, R.; Fimognari, F. L.; Alletto, M.; Messina, S.; Sesti, G.; Arturi, F.; Succurro, E.; Fiorentino, T. V.; Pedace, E.; Scarpino, P. E.; Carullo, G.; Maio, R.; Sciacqua, A.; Frugiuele, P.; Battaglia, G.; Atzori, S.; Delitala, G.; Angelucci, E.; Sestili, S.; Traisci, G.; Defeudis, L.; Dimichele, D.; Fava, A.; Balsano, C.; Deciantis, P.; Desideri, G.; Camerota, A.; Mezzetti, M.; Gresele, P.; Vedovati, C.; Fierro, T.; Puccetti, L.; Bertolotti, M.; Mussi, C.; Boddi, M.; Savino, A.; Contri, S.; Degl'Innocenti, G.; Saller, A.; Fabris, F.; Pesavento, R.; Filippi, L.; Vedovetto, V.; Puato, M.; Treleani, M.; Deluca, E.; Dezaiacomo, F.; Giantin, V.; Semplicini, A.; Minuz, P.; Romano, S.; Fantin, F.; Manica, A.; Stockner, I.; Pattis, P.; Gutmann, B.; Catena, C.; Colussi, G.; Sechi, L. A.; Annoni, G.; Bruni, A. A.; Castagna, A.; Spinelli, D.; Miceli, E.; Padula, D.; Schinco, G.; Spreafico, S.; Secchi, B.; Vanoli, M.; Casella, G.; Pulixi, E. A.; Sansone, L.; Serra, M. G.; Longo, S.; Antonaci, S.; Belfiore, A.; Frualdo, M.; Palasciano, G.; Ricci, L.; Ventrella, F.; Bianco, C.; Santovito, D.; Cipollone, F.; Nicolai, S.; Salvati, F.; Rini, G. B.; Scozzari, F.; Muiesan, M. L.; Salvetti, M.; Bazza, A.; Picardi, A.; Vespasiani-Gentilucci, U.; Devincentis, A.; Cosio, P.; Terzolo, M.; Madaffari, B.; Parasporo, B.; Fenoglio, L.; Bracco, C.; Melchio, R.; Gentili, T.; Salvi, A.; Nitti, C.; Gabrielli, A.; Martino, G. P.; Capucci, A.; Brambatti, M.; Sparagna, A.; Tirotta, D.; Andreozzi, P.; Ettorre, E.; Viscogliosi, G.; Servello, A.; Musumeci, M.; Delfino, M.; Giorgi, A.; Glorioso, N.; Melis, G.; Marras, G.; Matta, M.; Sacco, A.; Stellitano, E.; Scordo, A.; Russo, F.; Caruso, A. A.; Porreca, E.; Tana, M.; Ferri, C.; Cheli, P.; Portincasa, P.; Muscianisi, G.; Giordani, S.; Stanghellini, V.; Sabba, C.; Mancuso, G.; Bartone, M.; Calipari, D.; Arcidiacono, G.; Bellanuova, I.; Ferraro, M.; Marigliano, G.; Cozzolino, D.; Lampitella, A.; Acri, V.; Galasso, D.; Mazzei, F.; Buratti, A.; Galasso, S.; Porta, M.; Brizzi, M. F.; Fattorini, A.; Sampietro, F.; D'Angelo, A.; Manfredini, R.; Pala, M.; Fabbian, F.; Moroni, C.; Valente, L.; Lopreiato, F.; Parente, F.; Granata, M.; Moia, M.; Braham, S.; Rossi, M.; Pesce, M.; Gentile, A.; Catozzo, V.; Baciarello, G.; Cosimati, A.; Ageno, W.; Rancan, E.; Guasti, L.; Ciccaglioni, A.; Negri, S.; Polselli, M.; Prisco, D.; Marcucci, R.; Ferro, D.; Perri, L.; Saliola, M.; Delben, M.; Angelico, F.; Baratta, F.; Migliacci, R.; Porciello, G.; Corrao, S.; Napoleone, L.; Talerico, G.; Amoroso, D.; Romiti, G. F.; Ruscio, E.; Toriello, F.; Sperduti, N.; Todisco, T.; Ditanna, G.; Sacchetti, M. L.; Puddu, P. E.; Farcomeni, A.; Anzaldi, M.; Bazzini, C.; Bianchi, P. I.; Boari, B.; Buonauro, A.; Butta, C.; Buzzetti, E.; Calabria, S.; Capeci, W.; Caradio, F.; Carleo, P.; Carrabba, M. D.; Castorani, L.; Cecchetto, L.; Cicco, S.; Cimini, C.; Colombo, B. M.; De Giorgi, A.; Devuono, S.; Delcorso, L.; Denegri, A.; Digiosia, P.; Durante Mangoni, E.; Falsetti, L.; Forgione, A.; Giorgini, P.; Grassi, D.; Grembiale, A.; Hijazi, D.; Iamele, L.; Lorusso, G.; Marchese, A.; Marra, A. M.; Masala, M.; Miceli, G.; Montebianco Abenavoli, L.; Murgia, G.; Naccarato, P.; Pattoneri, P.; Perego, F.; Pesce, P.; Piano, S.; Pinna, M.; Pinto, D.; Pretti, V.; Pucci, G.; Salinaro, F.; Salzano, A.; Santilli, F.; Scarpini, F.; Scicali, R.; Sirico, D.; Suppressa, P.; Talia, M.; Tassone, E. J.; Torres, D.; Vazzana, N.; Vecchio, C. R.; Vidili, G.; Vitale, F.; Zaccone, V

Correction to: Major adverse cardiovascular events in non-valvular atrial fibrillation with chronic obstructive pulmonary disease: the ARAPACIS study (Internal and Emergency Medicine, (2018), 13, 5, (651-660), 10.1007/s11739-018-1835-9)

In the original publication, one of the ARAPACIS collaborators Dr. “Leonardo Di Gennaro” name has been erroneously mentioned as “Leonardo De Gennaro”

Understanding Factors Associated With Psychomotor Subtypes of Delirium in Older Inpatients With Dementia

Objectives: Few studies have analyzed factors associated with delirium subtypes. In this study, we investigate factors associated with subtypes of delirium only in patients with dementia to provide insights on the possible prevention and treatments. Design: This is a cross-sectional study nested in the \u201cDelirium Day\u201d study, a nationwide Italian point-prevalence study. Setting and Participants: Older patients admitted to 205 acute and 92 rehabilitation hospital wards. Measures: Delirium was evaluated with the 4-AT and the motor subtypes with the Delirium Motor Subtype Scale. Dementia was defined by the presence of a documented diagnosis in the medical records and/or prescription of acetylcholinesterase inhibitors or memantine prior to admission. Results: Of the 1057 patients with dementia, 35% had delirium, with 25.6% hyperactive, 33.1% hypoactive, 34.5% mixed, and 6.7% nonmotor subtype. There were higher odds of having venous catheters in the hypoactive (OR 1.82, 95% CI 1.18-2.81) and mixed type of delirium (OR 2.23, CI 1.43-3.46), whereas higher odds of urinary catheters in the hypoactive (OR 2.91, CI 1.92-4.39), hyperactive (OR 1.99, CI 1.23-3.21), and mixed types of delirium (OR 2.05, CI 1.36-3.07). We found higher odds of antipsychotics both in the hyperactive (OR 2.87, CI 1.81-4.54) and mixed subtype (OR 1.84, CI 1.24-2.75), whereas higher odds of antibiotics was present only in the mixed subtype (OR 1.91, CI 1.26-2.87). Conclusions and Implications: In patients with dementia, the mixed delirium subtype is the most prevalent followed by the hypoactive, hyperactive, and nonmotor subtype. Motor subtypes of delirium may be triggered by clinical factors, including the use of venous and urinary catheters, and the use of antipsychotics. Future studies are necessary to provide further insights on the possible pathophysiology of delirium in patients with dementia and to address the optimization of the management of potential risk factors