Monitoring the Variable Interstellar Absorption toward HD 219188 with HST/STIS

We discuss the results of continued spectroscopic monitoring of the variable intermediate-velocity (IV) absorption at v = -38 km/s toward HD 219188. After reaching maxima in mid-2000, the column densities of both Na I and Ca II in that IV component declined by factors >= 2 by the end of 2006. Comparisons between HST/STIS echelle spectra obtained in 2001, 2003, and 2004 and HST/GHRS echelle spectra obtained in 1994--1995 indicate the following: (1) The absorption from the dominant species S II, O I, Si II, and Fe II is roughly constant in all four sets of spectra -- suggesting that the total N(H) and the (mild) depletions have not changed significantly over a period of nearly ten years. (2) The column densities of the trace species C I (both ground and excited fine-structure states) and of the excited state C II* all increased by factors of 2--5 between 1995 and 2001 -- implying increases in the hydrogen density n_H (from about 20 cm^{-3} to about 45 cm^{-3}) and in the electron density n_e (by a factor >= 3) over that 6-year period. (3) The column densities of C I and C II* -- and the corresponding inferred n_H and n_e -- then decreased slightly between 2001 and 2004. (4) The changes in C I and C II* are very similar to those seen for Na I and Ca II. The relatively low total N(H) and the modest n_H suggest that the -38 km/s cloud toward HD 219188 is not a very dense knot or filament. Partial ionization of hydrogen appears to be responsible for the enhanced abundances of Na I, C I, Ca II, and C II*. In this case, the variations in those species appear to reflect differences in density and ionization [and not N(H)] over scales of tens of AU.Comment: 33 pages, 6 figures, aastex, accepted to Ap

A model for atomic and molecular interstellar gas: The Meudon PDR code

We present the revised ``Meudon'' model of Photon Dominated Region (PDR code), presently available on the web under the Gnu Public Licence at: http://aristote.obspm.fr/MIS. General organisation of the code is described down to a level that should allow most observers to use it as an interpretation tool with minimal help from our part. Two grids of models, one for low excitation diffuse clouds and one for dense highly illuminated clouds, are discussed, and some new results on PDR modelisation highlighted.Comment: accepted in ApJ sup

Spatially explicit estimates of N2O emissions from croplands suggest climate mitigation opportunities from improved fertilizer management

With increasing nitrogen (N) application to croplands required to support growing food demand, mitigating N2O emissions from agricultural soils is a global challenge. National greenhouse gas emissions accounting typically estimates N2O emissions at the country scale by aggregating all crops, under the assumption that N2O emissions are linearly related to N application. However, field studies and meta-analyses indicate a nonlinear relationship, in which N2O emissions are relatively greater at higher N application rates. Here we apply a super-linear emissions response model to crop-specific, spatially-explicit synthetic N fertilizer and manure N inputs to provide subnational accounting of global N2O emissions from croplands. We estimate 0.66 Tg of N2O-N direct global emissions circa 2000, with 50% of emissions concentrated in 13% of harvested area. Compared to estimates from the IPCC Tier 1 linear model, our updated N2O emissions range from 20-40% lower throughout Sub-Saharan Africa and Eastern Europe, to >120% greater in some Western European countries. At low N application rates, the weak non-linear response of N2O emissions suggests that relatively large increases in N fertilizer application would generate relatively small increases in N2O emissions. Since aggregated fertilizer data generate underestimation bias in nonlinear models, high-resolution N application data are critical to support accurate N2O emissions estimates

Probing the dynamic stalk region of the ribosome using solution NMR

Abstract: We describe an NMR approach based on the measurement of residual dipolar couplings (RDCs) to probe the structural and motional properties of the dynamic regions of the ribosome. Alignment of intact 70S ribosomes in filamentous bacteriophage enabled measurement of RDCs in the mobile C-terminal domain (CTD) of the stalk protein bL12. A structural refinement of this domain using the observed RDCs did not show large changes relative to the isolated protein in the absence of the ribosome, and we also found that alignment of the CTD was almost independent of the presence of the core ribosome particle, indicating that the inter-domain linker has significant flexibility. The nature of this linker was subsequently probed in more detail using a paramagnetic alignment strategy, which revealed partial propagation of alignment between neighbouring domains, providing direct experimental validation of a structural ensemble previously derived from SAXS and NMR relaxation measurements. Our results demonstrate the prospect of better characterising dynamical and functional regions of more challenging macromolecular machines and systems, for example ribosome–nascent chain complexes

Polarons with a twist

We consider a polaron model where molecular \emph{rotations} are important. Here, the usual hopping between neighboring sites is affected directly by the electron-phonon interaction via a {\em twist-dependent} hopping amplitude. This model may be of relevance for electronic transport in complex molecules and polymers with torsional degrees of freedom, such as DNA, as well as in molecular electronics experiments where molecular twist motion is significant. We use a tight-binding representation and find that very different polaronic properties are already exhibited by a two-site model -- these are due to the nonlinearity of the restoring force of the twist excitations, and of the electron-phonon interaction in the model. In the adiabatic regime, where electrons move in a {\em low}-frequency field of twisting-phonons, the effective splitting of the energy levels increases with coupling strength. The bandwidth in a long chain shows a power-law suppression with coupling, unlike the typical exponential dependence due to linear phonons.Comment: revtex4 source and one eps figur

Cooling Rates of Molecular Clouds Based on Numerical MHD Turbulence and non-LTE Radiative Transfer

We have computed line emission cooling rates for the main cooling species in models of interstellar molecular clouds. The models are based on numerical simulations of super-sonic magneto-hydrodynamic (MHD) turbulence. Non-LTE radiative transfer calculations have been performed to properly account for the complex density and velocity structures in the MHD simulations. Three models are used. Two of the models are based on MHD simulations with different magnetic field strength and the third includes the computation of self-gravity (in the super-Alfvenic regime of turbulence). The density and velocity fields in the simulations are determined self-consistently by the dynamics of super-sonic turbulence. The models are intended to represent molecular clouds with linear size L~6 pc and mean density ~300 cm^-3, with the density exceeding 10^4 cm^-3 in the densest cores. We present 12CO, 13CO, C18O, O2, OI, CI and H2O cooling rates in isothermal clouds with kinetic temperatures 10-80K. Analytical approximations are derived for the cooling rates. The inhomogeneity of the models reduces photon trapping and enhances the cooling in the densest parts of the clouds. Compared with earlier models the cooling rates are less affected by optical depth effects and are therefore higher. The main effects comes, however, from the density variation since cooling efficiency increases with density. This is very important for the cooling of the clouds as a whole since most cooling is provided by gas with density above the average.Comment: AASTeX, 19 pages, 15 figures; final, revised version; accepted to Ap

Molecular hydrogen, deuterium and metal abundances in the damped Ly-alpha system at z = 3.025 toward QSO 0347-3819

We have detected in high resolution spectra of the quasar Q0347--3819 obtained with the UVES spectrograph at the VLT/Kueyen telescope over 80 absorption features in the Lyman and Werner H2 bands at the redshift of a damped Ly-alpha system at z = 3.025. The z = 3.025 system spans over 80 km/s and exhibits a multicomponent velocity structure in the metal lines. The main component at z = 3.024855 shows a total H2 column density N(H2) = (4.10\pm0.21)*10^{14} cm^{-2} and a fractional molecular abundance f(H2) = (1.94\pm0.10)*10^{-6} derived from the H2 lines arising from J=0 to 5 rotational levels of the ground electronic-vibrational state. For the first time we unambiguously reveal a pronounced [alpha-element/iron-peak] enhancement of [O,Si/Zn] = 0.6\pm0.1 (6 sigma c.l.) at high redshift. The simultaneous analysis of metal and hydrogen lines leads to D/H = (3.75\pm0.25)*10^{-5}. This value is consistent with standard big bang nucleosynthesis if the baryon-to-photon ratio, eta, lies within the range 4.37*10^{-10} <= eta <= 5.32*10^{-10}, implying 0.016 <= Omega_b h^2_100 <= 0.020.Comment: 32 pages, 16 ps figures, accepted to Ap