The shaping of human diversity: filters, boundaries and transitions.

The evolution of modern humans was a complex process, involving major changes in levels of diversity through time. The fossils and stone tools that record the spatial distribution of our species in the past form the backbone of our evolutionary history, and one that allows us to explore the different processes-cultural and biological-that acted to shape the evolution of different populations in the face of major climate change. Those processes created a complex palimpsest of similarities and differences, with outcomes that were at times accelerated by sharp demographic and geographical fluctuations. The result is that the population ancestral to all modern humans did not look or behave like people alive today. This has generated questions regarding the evolution of human universal characters, as well as the nature and timing of major evolutionary events in the history of Homo sapiens The paucity of African fossils remains a serious stumbling block for exploring some of these issues. However, fossil and archaeological discoveries increasingly clarify important aspects of our past, while breakthroughs from genomics and palaeogenomics have revealed aspects of the demography of Late Quaternary Eurasian hominin groups and their interactions, as well as those between foragers and farmers. This paper explores the nature and timing of key moments in the evolution of human diversity, moments in which population collapse followed by differential expansion of groups set the conditions for transitional periods. Five transitions are identified (i) at the origins of the species, 240-200 ka; (ii) at the time of the first major expansions, 130-100 ka; (iii) during a period of dispersals, 70-50 ka; (iv) across a phase of local/regional structuring of diversity, 45-25 ka; and (v) during a phase of significant extinction of hunter-gatherer diversity and expansion of particular groups, such as farmers and later societies (the Holocene Filter), 15-0 ka.This article is part of the themed issue 'Major transitions in human evolution'.European Research Council (Grant ID: 295907 (Advanced Investigator Award))This is the final version of the article. It first appeared from Royal Society Publishing via http://dx.doi.org/10.1098/rstb.2015.022

Deciphering African late middle Pleistocene hominin diversity and the origin of our species

Abstract: The origin of Homo sapiens remains a matter of debate. The extent and geographic patterning of morphological diversity among Late Middle Pleistocene (LMP) African hominins is largely unknown, thus precluding the definition of boundaries of variability in early H. sapiens and the interpretation of individual fossils. Here we use a phylogenetic modelling method to predict possible morphologies of a last common ancestor of all modern humans, which we compare to LMP African fossils (KNM-ES 11693, Florisbad, Irhoud 1, Omo II, and LH18). Our results support a complex process for the evolution of H. sapiens, with the recognition of different, geographically localised, populations and lineages in Africa – not all of which contributed to our species’ origin. Based on the available fossils, H. sapiens appears to have originated from the coalescence of South and, possibly, East-African source populations, while North-African fossils may represent a population which introgressed into Neandertals during the LMP

Virtual ancestor reconstruction: Revealing the ancestor of modern humans and Neandertals.

The timing and geographic origin of the common ancestor of modern humans and Neandertals remain controversial. A poor Pleistocene hominin fossil record and the evolutionary complexities introduced by dispersals and regionalisation of lineages have fuelled taxonomic uncertainty, while new ancient genomic data have raised completely new questions. Here, we use maximum likelihood and 3D geometric morphometric methods to predict possible morphologies of the last common ancestor of modern humans and Neandertals from a simplified, fully resolved phylogeny. We describe the fully rendered 3D shapes of the predicted ancestors of humans and Neandertals, and assess their similarity to individual fossils or populations of fossils of Pleistocene age. Our results support models of an Afro-European ancestral population in the Middle Pleistocene (Homo heidelbergensis sensu lato) and further predict an African origin for this ancestral population.This study was partially funded by the Fyssen Foundation, and an Advanced ERC Award (IN-AFRICA Project). For permission to study specimens in their care we thank directors and curators of the following institutions: Musée de l’Homme (Paris, France); Institut de Paléontologie Humaine (Paris, France); Staatliches Museum für Naturkunde (Stuttgart, Germany); Aristotle University of Thessaloniki (Thessaloniki, Greece); Soprintendenza Archeologia del Lazio, Servizio di Antropologia (Rome, Italy); Museo di Antropologia G. Sergi (Sapienza Università di Roma, Italy); Museo preistorico-etonografico ‘L. Pigorini’ (Rome, Italy); National Museums of Kenya (Nairobi, Kenya); National Museum (Bloemfontein, Republic of South Africa); Natural History Museum (London, UK); Duckworth Collection (Cambridge, UK). We thank F. Lahr and F. Rivera for assistance with CT-scanning and E. Delson, R. Foley, L. Puymerail and A. Froment for help and ideas. Finally, we thank M. Plavcan, D. Polly, the Associate Editor and two anonymous reviewers for valuable comments and criticisms of earlier drafts which contributed to the improvement of this study.This is the author accepted manuscript. The final version is available from Elsevier via http://dx.doi.org/10.1016/j.jhevol.2015.11.00

Major transitions in human evolution.

Evolutionary problems are often considered in terms of 'origins', and research in human evolution seen as a search for human origins. However, evolution, including human evolution, is a process of transitions from one state to another, and so questions are best put in terms of understanding the nature of those transitions. This paper discusses how the contributions to the themed issue 'Major transitions in human evolution' throw light on the pattern of change in hominin evolution. Four questions are addressed: (1) Is there a major divide between early (australopithecine) and later (Homo) evolution? (2) Does the pattern of change fit a model of short transformations, or gradual evolution? (3) Why is the role of Africa so prominent? (4) How are different aspects of adaptation-genes, phenotypes and behaviour-integrated across the transitions? The importance of developing technologies and approaches and the enduring role of fieldwork are emphasized.This article is part of the themed issue 'Major transitions in human evolution'

P relim in ary p a laeo p ath o lo g y study in the Jaboticabeira II shellmound population: Jaguaruna, SC.

O presente trabalho é um estudo preliminar em paleopatologia da amostra de esqueletos humanos recuperada durante a primeira campanha de pesquisas no sambaqui Jaboticabeira II (SC), em 1997. Padrões metodológicos internacionalmente aceitos foram utilizados para a obtenção de parâmetros de composição demográfica, aspectos de saúde e modo de vida. A ausência de cáries, a grande ocorrência de infecções e a baixa prevalência de artrite foram alguns dos resultados obtidos.This is a preliminary palaeopathology study of a sample of human skeletal remains from the first research field season at the Jaboticabeira II shellmound, in Santa Catarina, Brazil. Internationally accepted methods were used to obtain information about their demography, health status, and way of life. The absence of caries, high infection rates and low arthritis prevalence were some of our findings

Carbon and Nitrogen Isotopic Signatures of Hair, Nail, and Breath from tropical African Human Populations

RATIONALE: Stable isotopic analyses are increasingly used to study the diets of past and present human populations. Yet, the carbon and nitrogen isotopic data of modern human diets collected so far are biased towards Europe and North America. Here, we address this gap by reporting on the dietary isotopic signatures of six tropical African communities: El Molo, Turkana (Kerio), Luhya (Webuye), Luhya (Port Victoria), and Luo (Port Victoria) from Kenya, and Baka from Cameroon; representing four subsistence strategies: fishing, pastoralism, agriculturalism, and hunter-gatherer. METHODS: We used EA-CF-IRMS to measure the carbon and nitrogen isotopic ratios of hair (n = 134) and nail (n = 80), and the carbon isotopic ratios of breath (n = 184) from these communities, as well as the carbon and nitrogen isotopic ratios of some food samples from the Kenyan communities. RESULTS: We expand on the known range of δ13 C values in human hair through the hunter-gatherer Baka, with a diet based on C3 plants, and through the agriculturalist Luhya (Webuye), with a diet based on C4 plants. In addition, we found that the consumption of fish from East African lakes is difficult to detect isotopically due to the combined effects of high nitrogen isotopic ratios of plants and the low nitrogen isotopic ratios of fish. Finally, we found that some of the communities studied are markedly changing their diets through increasing sedentism and urbanization. CONCLUSION: Our findings contribute substantially to the understanding of the environmental, demographic and economic dynamics that affect the dietary landscape of different tropical populations of Africa. These results highlight the importance of studying a broader sample of human populations and their diet, with a focus on their precise context - both from an isotopic and more general anthropological perspectives.This study was funded by a European Research Council Advanced Award to MML (In-Africa Project, ERC 295907), and carried out with permission from the National Commission for Science, Technology and Innovation, Kenya, No. NACOSTI/P/15/2669/4758

Estimating mobility using sparse data: Application to human genetic variation.

Mobility is one of the most important processes shaping spatiotemporal patterns of variation in genetic, morphological, and cultural traits. However, current approaches for inferring past migration episodes in the fields of archaeology and population genetics lack either temporal resolution or formal quantification of the underlying mobility, are poorly suited to spatially and temporally sparsely sampled data, and permit only limited systematic comparison between different time periods or geographic regions. Here we present an estimator of past mobility that addresses these issues by explicitly linking trait differentiation in space and time. We demonstrate the efficacy of this estimator using spatiotemporally explicit simulations and apply it to a large set of ancient genomic data from Western Eurasia. We identify a sequence of changes in human mobility from the Late Pleistocene to the Iron Age. We find that mobility among European Holocene farmers was significantly higher than among European hunter-gatherers both pre- and postdating the Last Glacial Maximum. We also infer that this Holocene rise in mobility occurred in at least three distinct stages: the first centering on the well-known population expansion at the beginning of the Neolithic, and the second and third centering on the beginning of the Bronze Age and the late Iron Age, respectively. These findings suggest a strong link between technological change and human mobility in Holocene Western Eurasia and demonstrate the utility of this framework for exploring changes in mobility through space and time.L.L. was supported by Natural Environment Research Council, UK Grants NE/K005243/1 and NE/K003259/1 and European Research Council Grant 339941-ADAPT. M.G.T. was supported by Wellcome Trust Senior Investigator Award Grant 100719/Z/12/Z and Leverhulme Trust Grant RP2011-R-045. A.M. and A.E. were supported by European Research Council Consolidator Grant 647787-LocalAdaptation. M.M.L. was supported by European Research Council Advanced Grant 295907, In-Africa. M.K. was funded by the Engineering and Physical Sciences Research Council through the Centre for Mathematics and Physics in the Life Sciences and Experimental Biology

Who were the Nataruk people? Mandibular morphology among late Pleistocene and early Holocene fisher-forager populations of West Turkana (Kenya).

Africa is the birthplace of the species Homo sapiens, and Africans today are genetically more diverse than other populations of the world. However, the processes that underpinned the evolution of African populations remain largely obscure. Only a handful of late Pleistocene African fossils (∼50-12 Ka) are known, while the more numerous sites with human fossils of early Holocene age are patchily distributed. In particular, late Pleistocene and early Holocene human diversity in Eastern Africa remains little studied, precluding any analysis of the potential factors that shaped human diversity in the region, and more broadly throughout the continent. These periods include the Last Glacial Maximum (LGM), a moment of extreme aridity in Africa that caused the fragmentation of population ranges and localised extinctions, as well as the 'African Humid Period', a moment of abrupt climate change and enhanced connectivity throughout Africa. East Africa, with its range of environments, may have acted as a refugium during the LGM, and may have played a critical biogeographic role during the heterogene`ous environmental recovery that followed. This environmental context raises a number of questions about the relationships among early Holocene African populations, and about the role played by East Africa in shaping late hunter-gatherer biological diversity. Here, we describe eight mandibles from Nataruk, an early Holocene site (∼10 Ka) in West Turkana, offering the opportunity of exploring population diversity in Africa at the height of the 'African Humid Period'. We use 3D geometric morphometric techniques to analyze the phenotypic variation of a large mandibular sample. Our results show that (i) the Nataruk mandibles are most similar to other African hunter-fisher-gatherer populations, especially to the fossils from Lothagam, another West Turkana locality, and to other early Holocene fossils from the Central Rift Valley (Kenya); and (ii) a phylogenetic connection may have existed between these Eastern African populations and some Nile Valley and Maghrebian groups, who lived at a time when a Green Sahara may have allowed substantial contact, and potential gene flow, across a vast expanse of Northern and Eastern Africa