Evaluation of the Ozone Fields in NASA's MERRA-2 Reanalysis

The assimilated ozone product from the Modern-Era Retrospective Analysis for Research and Applications, Version 2 (MERRA-2), produced at NASAs Global Modeling and Assimilation Office (GMAO) is summarized. The reanalysis begins in 1980 with the use of retrieved partial-column ozone concentrations from a series of Solar Backscatter Ultraviolet Radiometer (SBUV) instruments on NASA and NOAA spacecraft. Beginning in October 2004, retrieved ozone profiles from the Microwave Limb Sounder (MLS) and total column ozone from the Ozone Monitoring Instrument (OMI) on NASAs EOS Aura satellite are assimilated. While this change in data streams does lead to a discontinuity in the assimilated ozone fields in MERRA-2, making it not useful for studies in decadal (secular) trends in ozone, this choice was made to prioritize demonstrating the value NASAs high-quality research data in the reanalysis context. The MERRA-2 ozone is compared with independent satellite and ozonesonde data, focusing on the representation of the spatial and temporal variability of stratospheric and upper-tropospheric ozone. The comparisons show agreement within 10 (standard deviation of the difference) between MERRA-2 profiles and independent satellite data in most of the stratosphere. The agreement improves after 2004, when EOS Aura data are assimilated. The standard deviation of the differences between the lower-stratospheric and upper-tropospheric MERRA-2 ozone and ozonesondes is 11.2 and 24.5, respectively, with correlations of 0.8 and above. This is indicative of a realistic representation of the UTLS ozone variability in MERRA-2. After 2004, the upper tropospheric ozone in MERRA-2 shows a low bias compared to the sondes, but the covariance with independent observations is improved compared to earlier years. Case studies demonstrate the integrity of MERRA-2 analyses in representing important features such as tropopause folds

Estimation of Smoothing Error in SBUV Profile and Total Ozone Retrieval

Data from the Nimbus-4, Nimbus-7 Solar Backscatter Ultra Violet (SBUV) and seven of the NOAA series of SBUV/2 instruments spanning 41 years are being reprocessed using V8.6 algorithm. The data are scheduled to be released by the end of August 2011. An important focus of the new algorithm is to estimate various sources of errors in the SBUV profiles and total ozone retrievals. We discuss here the smoothing errors that describe the components of the profile variability that the SBUV observing system can not measure. The SBUV(/2) instruments have a vertical resolution of 5 km in the middle stratosphere, decreasing to 8 to 10 km below the ozone peak and above 0.5 hPa. To estimate the smoothing effect of the SBUV algorithm, the actual statistics of the fine vertical structure of ozone profiles must be known. The covariance matrix of the ensemble of measured ozone profiles with the high vertical resolution would be a formal representation of the actual ozone variability. We merged the MLS (version 3) and sonde ozone profiles to calculate the covariance matrix, which in general case, for single profile retrieval, might be a function of the latitude and month. Using the averaging kernels of the SBUV(/2) measurements and calculated total covariance matrix one can estimate the smoothing errors for the SBUV ozone profiles. A method to estimate the smoothing effect of the SBUV algorithm is described and the covariance matrixes and averaging kernels are provided along with the SBUV(/2) ozone profiles. The magnitude of the smoothing error varies with altitude, latitude, season and solar zenith angle. The analysis of the smoothing errors, based on the SBUV(/2) monthly zonal mean time series, shows that the largest smoothing errors were detected in the troposphere and might be as large as 15-20% and rapidly decrease with the altitude. In the stratosphere above 40 hPa the smoothing errors are less than 5% and between 10 and 1 hPa the smoothing errors are on the order of 1%. We validate our estimated smoothing errors by comparing the SBUV ozone profiles with other ozone profiling sensors

SBUV version 8.6 Retrieval Algorithm: Error Analysis and Validation Technique

SBUV version 8.6 algorithm was used to reprocess data from the Back Scattered Ultra Violet (BUV), the Solar Back Scattered Ultra Violet (SBUV) and a number of SBUV/2 instruments, which 'span a 41-year period from 1970 to 2011 (except a 5-year gap in the 1970s)[see Bhartia et al, 2012]. In the new version Daumont et al. [1992] ozone cross section were used, and new ozone [McPeters et ai, 2007] and cloud climatologies Doiner and Bhartia, 1995] were implemented. The algorithm uses the Optimum Estimation technique [Rodgers, 2000] to retrieve ozone profiles as ozone layer (partial column, DU) on 21 pressure layers. The corresponding total ozone values are calculated by summing ozone columns at individual layers. The algorithm is optimized to accurately retrieve monthly zonal mean (mzm) profiles rather than an individual profile, since it uses monthly zonal mean ozone climatology as the A Priori. Thus, the SBUV version 8.6 ozone dataset is better suited for long-term trend analysis and monitoring ozone changes rather than for studying short-term ozone variability. Here we discuss some characteristics of the SBUV algorithm and sources of error in the SBUV profile and total ozone retrievals. For the first time the Averaging Kernels, smoothing errors and weighting functions (or Jacobians) are included in the SBUV metadata. The Averaging Kernels (AK) represent the sensitivity of the retrieved profile to the true state and contain valuable information about the retrieval algorithm, such as Vertical Resolution, Degrees of Freedom for Signals (DFS) and Retrieval Efficiency [Rodgers, 2000]. Analysis of AK for mzm ozone profiles shows that the total number of DFS for ozone profiles varies from 4.4 to 5.5 out of 6-9 wavelengths used for retrieval. The number of wavelengths in turn depends on solar zenith angles. Between 25 and 0.5 hPa, where SBUV vertical resolution is the highest, DFS for individual layers are about 0.5

Short- and medium-term atmospheric constituent effects of very large solar proton events

International audienceSolar eruptions sometimes produce protons, which impact the Earth's atmosphere. These solar proton events (SPEs) generally last a few days and produce high energy particles that precipitate into the Earth's atmosphere. The protons cause ionization and dissociation processes that ultimately lead to an enhancement of odd-hydrogen and odd-nitrogen in the polar cap regions (>60° geomagnetic latitude). We have used the Whole Atmosphere Community Climate Model (WACCM3) to study the atmospheric impact of SPEs over the period 1963?2005. The very largest SPEs were found to be the most important and caused atmospheric effects that lasted several months after the events. We present the short- and medium-term (days to a few months) atmospheric influence of the four largest SPEs in the past 45 years (August 1972; October 1989; July 2000; and October?November 2003) as computed by WACCM3 and observed by satellite instruments. Polar mesospheric NOx (NO+NO2) increased by over 50 ppbv and mesospheric ozone decreased by over 30% during these very large SPEs. Changes in HNO3, N2O5, ClONO2, HOCl, and ClO were indirectly caused by the very large SPEs in October?November 2003, were simulated by WACCM3, and previously measured by Envisat Michelson Interferometer for Passive Atmospheric Sounding (MIPAS). WACCM3 output was also represented by sampling with the MIPAS averaging kernel for a more valid comparison. Although qualitatively similar, there are discrepancies between the model and measurement with WACCM3 predicted HNO3 and ClONO2 enhancements being smaller than measured and N2O5 enhancements being larger than measured. The HOCl enhancements were fairly similar in amounts and temporal variation in WACCM3 and MIPAS. WACCM3 simulated ClO decreases below 50 km, whereas MIPAS mainly observed increases, a very perplexing difference. Upper stratospheric and lower mesospheric NOx increased by over 10 ppbv and was transported during polar night down to the middle stratosphere in several weeks past the SPE. The WACCM3 simulations confirmed the SH HALOE observations of enhanced NOx in September 2000 as a result of the July 2000 SPE and the NH SAGE II observations of enhanced NO2 in March 1990 as a result of the October 1989 SPEs

Short- and Medium-term Atmospheric Effects of Very Large Solar Proton Events

Long-term variations in ozone have been caused by both natural and humankind related processes. In particular, the humankind or anthropogenic influence on ozone from chlorofluorocarbons and halons (chlorine and bromine) has led to international regulations greatly limiting the release of these substances. These anthropogenic effects on ozone are most important in polar regions and have been significant since the 1970s. Certain natural ozone influences are also important in polar regions and are caused by the impact of solar charged particles on the atmosphere. Such natural variations have been studied in order to better quantify the human influence on polar ozone. Large-scale explosions on the Sun near solar maximum lead to emissions of charged particles (mainly protons and electrons), some of which enter the Earth's magnetosphere and rain down on the polar regions. "Solar proton events" have been used to describe these phenomena since the protons associated with these solar events sometimes create a significant atmospheric disturbance. We have used the National Center for Atmospheric Research (NCAR) Whole Atmosphere Community Climate Model (WACCM) to study the short- and medium-term (days to a few months) influences of solar proton events between 1963 and 2005 on stratospheric ozone. The four largest events in the past 45 years (August 1972; October 1989; July 2000; and October-November 2003) caused very distinctive polar changes in layers of the Earth's atmosphere known as the stratosphere (12-50 km; -7-30 miles) and mesosphere (50-90 km; 30-55 miles). The solar protons connected with these events created hydrogen- and nitrogen- containing compounds, which led to the polar ozone destruction. The hydrogen-containing compounds have very short lifetimes and lasted for only a few days (typically the duration of the solar proton event). On the other hand, the nitrogen-containing compounds lasted much longer, especially in the Winter. The nitrogen oxides were predicted to increase substantially due to these solar events and led to mid- to upper polar stratospheric ozone decreases of over 20%. These WACCM results generally agreed with satellite measurements. Both WACCM and measurements showed enhancements of nitric acid, dinitrogen pentoxide, and chlorine nitrate, which were indirectly caused by these solar events. Solar proton events were shown to cause a significant change in the polar stratosphere and need to be considered in understanding variations during years of strong solar activity

A Hypomorphic Lsd1 Allele Results in Heart Development Defects in Mice

Article Authors Metrics Comments Related Content Abstract Introduction Results Discussion Materials and Methods Supporting Information Acknowledgments Author Contributions References Reader Comments (0) Media Coverage (0) Figures Abstract Lysine-specific demethylase 1 (Lsd1/Aof2/Kdm1a), the first enzyme with specific lysine demethylase activity to be described, demethylates histone and non-histone proteins and is essential for mouse embryogenesis. Lsd1 interacts with numerous proteins through several different domains, most notably the tower domain, an extended helical structure that protrudes from the core of the protein. While there is evidence that Lsd1-interacting proteins regulate the activity and specificity of Lsd1, the significance and roles of such interactions in developmental processes remain largely unknown. Here we describe a hypomorphic Lsd1 allele that contains two point mutations in the tower domain, resulting in a protein with reduced interaction with known binding partners and decreased enzymatic activity. Mice homozygous for this allele die perinatally due to heart defects, with the majority of animals suffering from ventricular septal defects. Molecular analyses revealed hyperphosphorylation of E-cadherin in the hearts of mutant animals. These results identify a previously unknown role for Lsd1 in heart development, perhaps partly through the control of E-cadherin phosphorylation

Trends in Global Tropospheric Ozone Inferred from a Composite Record of TOMS/OMI/MLS/OMPS Satellite Measurements and the MERRA-2 GMI Simulation

Past studies have suggested that ozone in the troposphere has increased globally throughout much of the 20th century due to increases in anthropogenic emissions and transport. We show, by combining satellite measurements with a chemical transport model, that during the last four decades tropospheric ozone does indeed indicate increases that are global in nature, yet still highly regional. Satellite ozone measurements from Nimbus-7 and Earth Probe Total Ozone Mapping Spectrometer (TOMS) are merged with ozone measurements from the Aura Ozone Monitoring Instrument/Microwave Limb Sounder (OMI/MLS) to determine trends in tropospheric ozone for 19792016. Both TOMS (19792005) and OMI/MLS (20052016) depict large increases in tropospheric ozone from the Near East to India and East Asia and further eastward over the Pacific Ocean. The 38-year merged satellite record shows total net change over this region of about +6 to +7 Dobson units (DU) (i.e., 15 %20 % of average background ozone), with the largest increase (4 DU) occurring during the 20052016 Aura period. The Global Modeling Initiative (GMI) chemical transport model with time-varying emissions is used to aid in the interpretation of tropospheric ozone trends for 19802016. The GMI simulation for the combined record also depicts the greatest increases of +6 to +7 DU over India and East Asia, very similar to the satellite measurements. In regions of significant increases in tropospheric column ozone (TCO) the trends are a factor of 22.5 larger for the Aura record when compared to the earlier TOMS record; for India and East Asia the trends in TCO for both GMI and satellite measurements are +3 DU decade(exp 1) or greater during 20052016 compared to about +1.2 to +1.4 DU decade(exp 1) for 19792005. The GMI simulation and satellite data also reveal a tropospheric ozone increases in +4 to +5 DU for the 38-year record over central Africa and the tropical Atlantic Ocean. Both the GMI simulation and satellite-measured tropospheric ozone during the latter Aura time period show increases of +3 DU decade1 over the N Atlantic and NE Pacific

IL-1β Suppresses Innate IL-25 and IL-33 Production and Maintains Helminth Chronicity.

Approximately 2 billion people currently suffer from intestinal helminth infections, which are typically chronic in nature and result in growth retardation, vitamin A deficiency, anemia and poor cognitive function. Such chronicity results from co-evolution between helminths and their mammalian hosts; however, the molecular mechanisms by which these organisms avert immune rejection are not clear. We have found that the natural murine helminth, Heligmosomoides polygyrus bakeri (Hp) elicits the secretion of IL-1β in vivo and in vitro and that this cytokine is critical for shaping a mucosal environment suited to helminth chronicity. Indeed in mice deficient for IL-1β (IL-1β(-/-)), or treated with the soluble IL-1βR antagonist, Anakinra, helminth infection results in enhanced type 2 immunity and accelerated parasite expulsion. IL-1β acts to decrease production of IL-25 and IL-33 at early time points following infection and parasite rejection was determined to require IL-25. Taken together, these data indicate that Hp promotes the release of host-derived IL-1β that suppresses the release of innate cytokines, resulting in suboptimal type 2 immunity and allowing pathogen chronicity