High Expression of DNMT1 was Correlated with beta-catenin Accumulation and Malignant Phynotype of Lung Squamous Cell Carcinoma and Adenocarcinoma

Background and objective DNA methyltransferase 1 (DNMT1) is one of the important molecules regulating DNA methylation. The abnormal expression of DNMT1 was associated with the methylation and inactivation of tumor suppressor gene and tumorigenesis. The aim of this study is to clarify the difference of DNMT1 expression between lung cancer tissues and corresponding normal lung tissues, to analyze the relationships between DNMT1 expression and clinicopathologic characteristics of lung squamous cell carcinoma and adenocarcinoma, and to investigate the correlation between the expressions of DNMT1 and β-catenin. Methods The expressions of DNMT1 and β-catenin were examined in 84 lung squamous cell carcinoma and adenocarcinoma tissues and corresponding normal lung tissues using tissue microarray and immunohistochemistry. Results The average positive rate of DNMT1 was significantly higher in 84 lung cancer tissues [(58.04±35.07)%] than that in corresponding normal lung tissues [(6.88±10.26)%](t=12.835, P < 0.001). The high expression of DNMT1 was positively correlated with adenocarcinoma histological type (r=0.365, P=0.001), poor differentiation (r=0.253, P=0.021) and lymph node metastasis (r=0.246, P=0.024) in lung cancer. The expression of DNMT1 was significantly correlated with the cytoplasmic expression of β-catenin (r=0.571, P < 0.001). Conclusion The high expression of DNMT1 was a common phenomenon in lung squamous cell carcinoma and adenocarcinoma. The high expression of DNMT1 was correlated with the malignant phynotype of lung cancer. DNMT1 may express coordinately with β-catenin in lung cancer

VaBUS: Edge-Cloud Real-Time Video Analytics via Background Understanding and Subtraction

Edge-cloud collaborative video analytics is transforming the way data is being handled, processed, and transmitted from the ever-growing number of surveillance cameras around the world. To avoid wasting limited bandwidth on unrelated content transmission, existing video analytics solutions usually perform temporal or spatial filtering to realize aggressive compression of irrelevant pixels. However, most of them work in a context-agnostic way while being oblivious to the circumstances where the video content is happening and the context-dependent characteristics under the hood. In this work, we propose VaBUS, a real-time video analytics system that leverages the rich contextual information of surveillance cameras to reduce bandwidth consumption for semantic compression. As a task-oriented communication system, VaBUS dynamically maintains the background image of the video on the edge with minimal system overhead and sends only highly confident Region of Interests (RoIs) to the cloud through adaptive weighting and encoding. With a lightweight experience-driven learning module, VaBUS is able to achieve high offline inference accuracy even when network congestion occurs. Experimental results show that VaBUS reduces bandwidth consumption by 25.0%-76.9% while achieving 90.7% accuracy for both the object detection and human keypoint detection tasks

Characterizing Tetraploid Populations of <i>Actinidia chinensis</i> for Kiwifruit Genetic Improvement

Understanding genetic diversity and structure in natural populations and their suitable habitat response to environmental changes is critical for the protection and utilization of germplasm resources. We evaluated the genetic diversity and structure of 24 A. chinensis populations using simple sequence repeat (SSR) molecular markers. The potential suitable distribution of tetraploid A. chinensis estimated under the current climate and predicted for the future climate was generated with ecological niche modeling (ENM). The results indicated that the polyploid populations of A.chinensis have high levels of genetic diversity and that there are distinct eastern and western genetic clusters. The population structure of A. chinensis can be explained by an isolation-by-distance model. The results also revealed that potentially suitable areas of tetraploids will likely be gradually lost and the habitat will likely be increasingly fragmented in the future. This study provides an extensive overview of tetraploid A. chinensis across its distribution range, contributing to a better understanding of its germplasm resources. These results can also provide the scientific basis for the protection and sustainable utilization of kiwifruit wild resources

The First Complete Chloroplast Genome Sequences in Actinidiaceae: Genome Structure and Comparative Analysis.

Actinidia chinensis is an important economic plant belonging to the basal lineage of the asterids. Availability of a complete Actinidia chloroplast genome sequence is crucial to understanding phylogenetic relationships among major lineages of angiosperms and facilitates kiwifruit genetic improvement. We report here the complete nucleotide sequences of the chloroplast genomes for Actinidia chinensis and A. chinensis var deliciosa obtained through de novo assembly of Illumina paired-end reads produced by total DNA sequencing. The total genome size ranges from 155,446 to 157,557 bp, with an inverted repeat (IR) of 24,013 to 24,391 bp, a large single copy region (LSC) of 87,984 to 88,337 bp and a small single copy region (SSC) of 20,332 to 20,336 bp. The genome encodes 113 different genes, including 79 unique protein-coding genes, 30 tRNA genes and 4 ribosomal RNA genes, with 16 duplicated in the inverted repeats, and a tRNA gene (trnfM-CAU) duplicated once in the LSC region. Comparisons of IR boundaries among four asterid species showed that IR/LSC borders were extended into the 5' portion of the psbA gene and IR contraction occurred in Actinidia. The clap gene has been lost from the chloroplast genome in Actinidia, and may have been transferred to the nucleus during chloroplast evolution. Twenty-seven polymorphic simple sequence repeat (SSR) loci were identified in the Actinidia chloroplast genome. Maximum parsimony analyses of a 72-gene, 16 taxa angiosperm dataset strongly support the placement of Actinidiaceae in Ericales within the basal asterids

Genetic Diversity Analysis and Core Collection Construction of the <i>Actinidia chinensis</i> Complex (Kiwifruit) Based on SSR Markers

Kiwifruit belonging to the Actinidiaceae family is a perennial, dioecious vine called ‘the king of fruits’ due to its considerably nutritious and sweet characteristics. A. chinensis complex, including two main groups, A. chinensis var. chinensis and A. chinensis var. deliciosa, is a major component of Actinidia due to their huge economic value and the high degree of development and utilization. Wild resources are widely distributed in China, but are under serious threat due to extreme environments and destroyed habitats. Thus, it is of great significance for the conservation of kiwifruit resources and the sustainable development of the kiwifruit industry to evaluate the genetic diversity of existing genetic resources and to systematically construct a core collection of the A. chinensis complex. In this study, 40 high polymorphism microsatellites markers were used to investigate all accessions from the A. chinensis complex. A total of 888 alleles were marked with 22.2 alleles in each locus. The expected heterozygosity was 0.846, the observed heterozygosity was 0.622, the polymorphism information content was 0.835, and the Shannon information index was 2.369. Among these loci, the observed heterozygosity of 38 loci was lower than expected. The inbreeding coefficient was 0.257, which indicates that frequent hybridization occurred between close relatives. Analyses of molecular variance showed that genetic variations mainly came from the population. Finally, a core collection containing 93 accessions was constructed. The bank not only perfectly represented the genetic diversity of the original population, but also had excellent potential for development and utilization. Our research provides a crucial reference for the future conservation, germplasm identification, and genetic breeding of kiwifruit

Sequence identity plots between four sequenced chloroplast genomes, with <i>Camellia sinensis</i> as a reference.

<p>The vertical scale indicates the identity percentage (50% to 100%). The horizontal axis corresponds to the coordinates within the chloroplast genome. Annotated genes are displayed along the top.</p

List of genes encoded by the <i>Actinidia chinensis</i> plastome.

<p>^aGene with two introns.</p><p>^bGene with one intron.</p><p>^cGenes located in the inverted repeats.</p><p>List of genes encoded by the <i>Actinidia chinensis</i> plastome.</p

Phylogenetic position of <i>Actinidia</i> as inferred by MP analyses of 72 protein-coding genes.

<p>The MP tree has a length of 35,711, with a consistency index of 0.66 and a retention index of 0.44. Numbers above the lines indicate the maximum parsimony bootstrap value > 50% for each clade. The position of <i>Actinidia</i> is shown in boldface.</p