Weighted Modal Transition Systems

Specification theories as a tool in model-driven development processes of component-based software systems have recently attracted a considerable attention. Current specification theories are however qualitative in nature, and therefore fragile in the sense that the inevitable approximation of systems by models, combined with the fundamental unpredictability of hardware platforms, makes it difficult to transfer conclusions about the behavior, based on models, to the actual system. Hence this approach is arguably unsuited for modern software systems. We propose here the first specification theory which allows to capture quantitative aspects during the refinement and implementation process, thus leveraging the problems of the qualitative setting. Our proposed quantitative specification framework uses weighted modal transition systems as a formal model of specifications. These are labeled transition systems with the additional feature that they can model optional behavior which may or may not be implemented by the system. Satisfaction and refinement is lifted from the well-known qualitative to our quantitative setting, by introducing a notion of distances between weighted modal transition systems. We show that quantitative versions of parallel composition as well as quotient (the dual to parallel composition) inherit the properties from the Boolean setting.Comment: Submitted to Formal Methods in System Desig

A Few Considerations on Structural and Logical Composition in Specification Theories

Over the last 20 years a large number of automata-based specification theories have been proposed for modeling of discrete,real-time and probabilistic systems. We have observed a lot of shared algebraic structure between these formalisms. In this short abstract, we collect results of our work in progress on describing and systematizing the algebraic assumptions in specification theories.Comment: In Proceedings FIT 2010, arXiv:1101.426

Statistical Model Checking of Dynamic Networks of Stochastic Hybrid Automata

In this paper we present a modelling formalism for dynamic networksof stochastic hybrid automata. In particular, our formalism is based on primitivesfor the dynamic creation and termination of hybrid automata components duringthe execution of a system. In this way we allow for natural modelling of conceptssuch as multiple threads found in various programming paradigms, as well as thedynamic evolution of biological systems.We provide a natural stochastic semantics of the modelling formalism based on re-peated output races between the dynamic evolving components of a system. Asspecification language we present a quantified extension of the logic Metric Tempo-ral Logic (MTL). As a main contribution of this paper, the statistical model checkingengine of U PPAAL has been extended to the setting of dynamic networks of hybridsystems and quantified MTL. We demonstrate the usefulness of the extended for-malisms in an analysis of a dynamic version of the well-known Train Gate example,as well as in natural monitoring of a MTL formula, where observations may lead todynamic creation of monitors for sub-formulas

Experimental Biological Protocols with Formal Semantics

Both experimental and computational biology is becoming increasingly automated. Laboratory experiments are now performed automatically on high-throughput machinery, while computational models are synthesized or inferred automatically from data. However, integration between automated tasks in the process of biological discovery is still lacking, largely due to incompatible or missing formal representations. While theories are expressed formally as computational models, existing languages for encoding and automating experimental protocols often lack formal semantics. This makes it challenging to extract novel understanding by identifying when theory and experimental evidence disagree due to errors in the models or the protocols used to validate them. To address this, we formalize the syntax of a core protocol language, which provides a unified description for the models of biochemical systems being experimented on, together with the discrete events representing the liquid-handling steps of biological protocols. We present both a deterministic and a stochastic semantics to this language, both defined in terms of hybrid processes. In particular, the stochastic semantics captures uncertainties in equipment tolerances, making it a suitable tool for both experimental and computational biologists. We illustrate how the proposed protocol language can be used for automated verification and synthesis of laboratory experiments on case studies from the fields of chemistry and molecular programming

Timed I/O Automata: It is never too late to complete your timed specification theory

A specification theory combines notions of specifications and implementations with a satisfaction relation, a refinement relation and a set of operators supporting stepwise design. We develop a complete specification framework for real-time systems using Timed I/O Automata as the specification formalism, with the semantics expressed in terms of Timed I/O Transition Systems. We provide constructs for refinement, consistency checking, logical and structural composition, and quotient of specifications -- all indispensable ingredients of a compositional design methodology. The theory is backed by rigorous proofs and is being implemented in the open-source tool ECDAR.Comment: Version submitted for revie

An Inverse Method for Policy-Iteration Based Algorithms

We present an extension of two policy-iteration based algorithms on weighted graphs (viz., Markov Decision Problems and Max-Plus Algebras). This extension allows us to solve the following inverse problem: considering the weights of the graph to be unknown constants or parameters, we suppose that a reference instantiation of those weights is given, and we aim at computing a constraint on the parameters under which an optimal policy for the reference instantiation is still optimal. The original algorithm is thus guaranteed to behave well around the reference instantiation, which provides us with some criteria of robustness. We present an application of both methods to simple examples. A prototype implementation has been done

Computing Nash Equilibrium in Wireless Ad Hoc Networks: A Simulation-Based Approach

This paper studies the problem of computing Nash equilibrium in wireless networks modeled by Weighted Timed Automata. Such formalism comes together with a logic that can be used to describe complex features such as timed energy constraints. Our contribution is a method for solving this problem using Statistical Model Checking. The method has been implemented in UPPAAL model checker and has been applied to the analysis of Aloha CSMA/CD and IEEE 802.15.4 CSMA/CA protocols.Comment: In Proceedings IWIGP 2012, arXiv:1202.422