The Role of Habitat Heterogeneity in Structuring Mangrove Bird Assemblages

Mangrove habitats are under severe land use pressure throughout the world and Australia is no exception. Here we describe the heterogeneity of mangrove habitat and its relationship with mangrove bird diversity. We examined the role of mangrove habitat complexity in determining the richness of avian mangrove dependent species (MDS) and interior species, overall bird species richness and density. High species richness (overall and MDS) and density in the mangroves was associated with plant species richness, the density of the understory and food resource distribution. Furthermore, habitat heterogeneity rather than patch area per se was a more important predictor of species richness in the mangroves. These findings stress the importance of habitat diversity and quality to the diversity and density of birds in mangroves. Thus, habitat heterogeneity within mangroves is a crucial patch characteristic, independent of mangrove patch size, for maintaining diverse avian species assemblages

Resource Partitioning by Mangrove Bird Communities in North Australia

Mangrove bird communities in north Australia comprise relatively few passerine species compared with other arboreal habitats in the region. Mangroves are dominated by a few tree species and there are potentially few resource axes available for partitioning by terrestrial birds. Competition for limited resources is predicted to cause strong niche differentiation and a highly structured, but low diversity, bird assemblage. Using multivariate and bipartite network analyses based on 1771 foraging observations (33% of 5320 behavioral observations), we examined resource partitioning by 20 terrestrial bird species in mangroves of north Australia. The mangrove bird community largely comprised generalist insectivores that partitioned insects by size with moderate-to-high interspecific overlap in diet. Gleaning for insects was the most common foraging mode. Few species specialized on nectar. Flowers of one or more mangrove species were available in every month of the year and insect abundance was correlated with flowering peaks. Niche differentiation by birds was determined by food type and foraging mode more than by broad spatial (mangrove zones) or temporal (seasonal) segregation of the use of resources. There was little evidence of bird species saturation or species sorting, suggesting loose species packing and a lesser role than expected for species interactions and interference competition in structuring the bird assemblage in mangroves

The importance of long‐term experiments in agriculture: their management to ensure continued crop production and soil fertility; the Rothamsted experience

Summary Long‐term field experiments that test a range of treatments and are intended to assess the sustainability of crop production, and thus food security, must be managed actively to identify any treatment that is failing to maintain or increase yields. Once identified, carefully considered changes can be made to the treatment or management, and if they are successful yields will change. If suitable changes cannot be made to an experiment to ensure its continued relevance to sustainable crop production, then it should be stopped. Long‐term experiments have many other uses. They provide a field resource and samples for research on plant and soil processes and properties, especially those properties where change occurs slowly and affects soil fertility. Archived samples of all inputs and outputs are an invaluable source of material for future research, and data from current and archived samples can be used to develop models to describe soil and plant processes. Such changes and uses in the Rothamsted experiments are described, and demonstrate that with the appropriate crop, soil and management, acceptable yields can be maintained for many years, with either organic manure or inorganic fertilizers. Highlights Long‐term experiments demonstrate sustainability and increases in crop yield when managed to optimize soil fertility. Shifting individual response curves into coincidence increases understanding of the factors involved. Changes in inorganic and organic pollutants in archived crop and soil samples are related to inputs over time. Models describing soil processes are developed from current and archived soil data

Fine-mapping host genetic variation underlying outcomes to Mycobacterium bovis infection in dairy cows

Abstract Background Susceptibility to Mycobacterium bovis infection in cattle is governed in part by host genetics. However, cattle diagnosed as infected with M. bovis display varying signs of pathology. The variation in host response to infection could represent a continuum since time of exposure or distinct outcomes due to differing pathogen handling. The relationships between host genetics and variation in host response and pathological sequelae following M. bovis infection were explored by genotyping 1966 Holstein-Friesian dairy cows at 538,231 SNPs with three distinct phenotypes. These were: single intradermal cervical comparative tuberculin (SICCT) test positives with visible lesions (VLs), SICCT-positives with undetected visible lesions (NVLs) and matched controls SICCT-negative on multiple occasions. Results Regional heritability mapping identified three loci associated with the NVL phenotype on chromosomes 17, 22 and 23, distinct to the region on chromosome 13 associated with the VL phenotype. The region on chromosome 23 was at genome-wide significance and candidate genes overlapping the mapped window included members of the bovine leukocyte antigen class IIb region, a complex known for its role in immunity and disease resistance. Chromosome heritability analysis attributed variance to six and thirteen chromosomes for the VL and NVL phenotypes, respectively, and four of these chromosomes were found to explain a proportion of the phenotypic variation for both the VL and NVL phenotype. By grouping the M. bovis outcomes (VLs and NVLs) variance was attributed to nine chromosomes. When contrasting the two M. bovis infection outcomes (VLs vs NVLs) nine chromosomes were found to harbour heritable variation. Regardless of the case phenotype under investigation, chromosome heritability did not exceed 8% indicating that the genetic control of bTB resistance consists of variants of small to moderate effect situated across many chromosomes of the bovine genome. Conclusions These findings suggest the host genetics of M. bovis infection outcomes is governed by distinct and overlapping genetic variants. Thus, variation in the pathology of M. bovis infected cattle may be partly genetically determined and indicative of different host responses or pathogen handling. There may be at least three distinct outcomes following M. bovis exposure in dairy cattle: resistance to infection, infection resulting in pathology or no detectable pathology

Applications of industry information in sugarcane\ud production systems

The Australian sugar industry collects, during normal commercial operations, data on the production of sugarcane,\ud although the nature and extent of the information varies considerably between regions. These data have become increasingly accessible to researchers who, through various analytical methods, have shown that this information can be used for a range of purposes. Examples include the development of regional models to predict CCS in response to rainfall, the estimation of genetic gain over an extended period across many regions, the development of alternative options to improve the efficiency of cane supply to the mill, the assessment of trends in productivity (including intra-regional spatial and temporal\ud productivity trends), and the identification of attributes of the production system that affect productivity. Experience has shown that, while they are essentially empirical in nature, these analyses can be used to define problems within the industry and either initiate or complement more traditional agronomic and genetic research necessary to solve these problems. This paper reviews the different ways that industry information has been used to facilitate decision-making and their value in the identification of problems such as a chronic decline in CCS in the wet tropics. The merits of expanding this type of approach in the sugar industry more generally are also discussed

Avian species-assemblage structure and indicator bird species of mangroves in the Australian monsoon tropics

Mangroves are threatened worldwide yet they host diverse avian assemblages, especially in Australia. We examined the diversity, density and habitat use of birds in northern Australian mangroves to determine the influence of habitat patch-size and floristic composition on the structure of mangrove bird assemblages. Birds were surveyed using line transects in 13 mangrove patches. A total of 70 species was encountered, with a mean density of 11.7 individuals ha–1,including 11 of 12 known mangrove-dependent species. Many species were strongly associated with, and indicative of, a specific mangrove plant zone, emphasising the importance of the number of zones to bird diversity at a site. Of six functional guilds, the insectivores were most dominant, followed by nectarivores. Accordingly, avian assemblage structure was influenced by mangrove flowering phenology. Large mangrove patches supported fewer species than many smaller patches of equivalent combined area, and species richness was independent of area. In addition, there was no density compensation or a density–area relationship, implying that assemblages are not saturated with species and species interactions do not determine assemblage structure. In order of increasing importance, avian assemblage structure in mangroves is determined by the type and diversity of mangrove zones, the timing of mangrove flowering and the nature of the matrix surrounding mangroves

Understanding and managing the late time of ratooning effect on cane yield\ud

Each year growers are faced with the decision of when to harvest individual blocks of sugarcane throughout the harvest season. This decision influences the yield of the\ud current crop and can affect the yield in the following season. Growers must therefore decide which blocks to harvest early and which to harvest later in the harvest season. Usually, the latest harvested cane is the lowest yielding the following year (the ‘late harvest’ effect). Block productivity data from Tully were used to determine the effects of harvest timing on cane yield of the current and subsequent crop. The results are tabulated to provide a ready reference to these time of harvest effects on the current and future crop in either a single year or over the full crop cycle for the Tully district