Identification of the initial molecular changes in response to circulating angiogenic cells-mediated therapy in critical limb ischemia

BackgroundCritical limb ischemia (CLI) constitutes the most aggressive form of peripheral arterial occlusive disease, characterized by the blockade of arteries supplying blood to the lower extremities, significantly diminishing oxygen and nutrient supply. CLI patients usually undergo amputation of fingers, feet, or extremities, with a high risk of mortality due to associated comorbidities.Circulating angiogenic cells (CACs), also known as early endothelial progenitor cells, constitute promising candidates for cell therapy in CLI due to their assigned vascular regenerative properties. Preclinical and clinical assays with CACs have shown promising results. A better understanding of how these cells participate in vascular regeneration would significantly help to potentiate their role in revascularization.Herein, we analyzed the initial molecular mechanisms triggered by human CACs after being administered to a murine model of CLI, in order to understand how these cells promote angiogenesis within the ischemic tissues.MethodsBalb-c nude mice (n:24) were distributed in four different groups: healthy controls (C, n:4), shams (SH, n:4), and ischemic mice (after femoral ligation) that received either 50 mu l physiological serum (SC, n:8) or 5x10(5) human CACs (SE, n:8). Ischemic mice were sacrificed on days 2 and 4 (n:4/group/day), and immunohistochemistry assays and qPCR amplification of Alu-human-specific sequences were carried out for cell detection and vascular density measurements. Additionally, a label-free MS-based quantitative approach was performed to identify protein changes related.ResultsAdministration of CACs induced in the ischemic tissues an increase in the number of blood vessels as well as the diameter size compared to ischemic, non-treated mice, although the number of CACs decreased within time. The initial protein changes taking place in response to ischemia and more importantly, right after administration of CACs to CLI mice, are shown.ConclusionsOur results indicate that CACs migrate to the injured area; moreover, they trigger protein changes correlated with cell migration, cell death, angiogenesis, and arteriogenesis in the host. These changes indicate that CACs promote from the beginning an increase in the number of vessels as well as the development of an appropriate vascular network.Institute of Health Carlos III, ISCIII; Junta de Andaluci

Effective Rheology of Bubbles Moving in a Capillary Tube

We calculate the average volumetric flux versus pressure drop of bubbles moving in a single capillary tube with varying diameter, finding a square-root relation from mapping the flow equations onto that of a driven overdamped pendulum. The calculation is based on a derivation of the equation of motion of a bubble train from considering the capillary forces and the entropy production associated with the viscous flow. We also calculate the configurational probability of the positions of the bubbles.Comment: 4 pages, 1 figur

Complementary intestinal mucosa and microbiota responses to caloric restriction

The intestine is key for nutrient absorption and for interactions between the microbiota and its host. Therefore, the intestinal response to caloric restriction (CR) is thought to be more complex than that of any other organ. Submitting mice to 25% CR during 14 days induced a polarization of duodenum mucosa cell gene expression characterised by upregulation, and downregulation of the metabolic and immune/inflammatory pathways, respectively. The HNF, PPAR, STAT, and IRF families of transcription factors, particularly the Pparα and Isgf3 genes, were identified as potentially critical players in these processes. The impact of CR on metabolic genes in intestinal mucosa was mimicked by inhibition of the mTOR pathway. Furthermore, multiple duodenum and faecal metabolites were altered in CR mice. These changes were dependent on microbiota and their magnitude corresponded to microbial density. Further experiments using mice with depleted gut bacteria and CR-specific microbiota transfer showed that the gene expression polarization observed in the mucosa of CR mice is independent of the microbiota and its metabolites. The holistic interdisciplinary approach that we applied allowed us to characterize various regulatory aspects of the host and microbiota response to CR

SalmoNet, an integrated network of ten Salmonella enterica strains reveals common and distinct pathways to host adaptation

Salmonella enterica is a prominent bacterial pathogen with implications on human and animal health. Salmonella serovars could be classified as gastro-intestinal or extra-intestinal. Genome-wide comparisons revealed that extra-intestinal strains are closer relatives of gastro-intestinal strains than to each other indicating a parallel evolution of this trait. Given the complexity of the differences, a systems-level comparison could reveal key mechanisms enabling extra-intestinal serovars to cause systemic infections. Accordingly, in this work, we introduce a unique resource, SalmoNet, which combines manual curation, high-throughput data and computational predictions to provide an integrated network for Salmonella at the metabolic, transcriptional regulatory and protein-protein interaction levels. SalmoNet provides the networks separately for five gastro-intestinal and five extra-intestinal strains. As a multi-layered, multi-strain database containing experimental data, SalmoNet is the first dedicated network resource for Salmonella. It comprehensively contains interactions between proteins encoded in Salmonella pathogenicity islands, as well as regulatory mechanisms of metabolic processes with the option to zoom-in and analyze the interactions at specific loci in more detail. Application of SalmoNet is not limited to strain comparisons as it also provides a Salmonella resource for biochemical network modeling, host-pathogen interaction studies, drug discovery, experimental validation of novel interactions, uncovering new pathological mechanisms from emergent properties and epidemiological studies. SalmoNet is available at http://salmonet.org

Alignment of the ALICE Inner Tracking System with cosmic-ray tracks

37 pages, 15 figures, revised version, accepted by JINSTALICE (A Large Ion Collider Experiment) is the LHC (Large Hadron Collider) experiment devoted to investigating the strongly interacting matter created in nucleus-nucleus collisions at the LHC energies. The ALICE ITS, Inner Tracking System, consists of six cylindrical layers of silicon detectors with three different technologies; in the outward direction: two layers of pixel detectors, two layers each of drift, and strip detectors. The number of parameters to be determined in the spatial alignment of the 2198 sensor modules of the ITS is about 13,000. The target alignment precision is well below 10 micron in some cases (pixels). The sources of alignment information include survey measurements, and the reconstructed tracks from cosmic rays and from proton-proton collisions. The main track-based alignment method uses the Millepede global approach. An iterative local method was developed and used as well. We present the results obtained for the ITS alignment using about 10^5 charged tracks from cosmic rays that have been collected during summer 2008, with the ALICE solenoidal magnet switched off.Peer reviewe

Difficulty Classification of Mountainbike Downhill Trails utilizing Deep Neural Networks

The difficulty of mountainbike downhill trails is a subjective perception. However, sports-associations and mountainbike park operators attempt to group trails into different levels of difficulty with scales like the Singletrail-Skala (S0-S5) or colored scales (blue, red, black, ...) as proposed by The International Mountain Bicycling Association. Inconsistencies in difficulty grading occur due to the various scales, different people grading the trails, differences in topography, and more. We propose an end-to-end deep learning approach to classify trails into three difficulties easy, medium, and hard by using sensor data. With mbientlab Meta Motion r0.2 sensor units, we record accelerometer- and gyroscope data of one rider on multiple trail segments. A 2D convolutional neural network is trained with a stacked and concatenated representation of the aforementioned data as its input. We run experiments with five different sample- and five different kernel sizes and achieve a maximum Sparse Categorical Accuracy of 0.9097. To the best of our knowledge, this is the first work targeting computational difficulty classification of mountainbike downhill trails.Comment: 11 pages, 5 figure

Preferência de Cotesia flavipes (Cameron, 1891) (Hymenoptera: Braconidae) por lagartas de Diatraea saccharalis (Fabricius, 1794) (Lepidoptera: Crambidae) alimentadas com diferentes cultivares de cana-de-açúcar

O objetivo desta pesquisa foi avaliar a preferência do parasitoide Cotesia flavipes (Hymenoptera: Braconidae) por lagartas de Diatraea saccharalis (Lepidoptera: Crambidae), alimentadas com diferentes cultivares de cana-de-açúcar. O experimento foi conduzido em laboratório, em duas condições de alimentação, uma envolvendo lagartas de D. saccharalis, alimentadas em dieta artificial, e, a outra, com lagartas alimentadas em dieta artificial e mantidas temporariamente nos toletes dos cultivares de cana-de-açúcar. Os cultivares utilizados foram: SP80-1842 e SP81-3250, resistentes, e RB855536, suscetível à D. saccharalis. A preferência para oviposição das fêmeas de C. flavipes foi avaliada em testes com e sem chance de escolha, em delineamento inteiramente casualizado, com quatro tratamentos e 15 repetições. Lagartas de D. saccharalis com 19 dias de idade foram oferecidas para fêmeas de C. flavipes, acasaladas e com 24 horas de idade, em ambos os testes. No teste com chance de escolha, utilizou-se um olfatômetro, o qual constou de quatro compartimentos, em cujo centro liberaram-se quatro fêmeas de C. flavipes, enquanto, no teste sem chance de escolha, foram utilizadas placas de Petri, no interior das quais se colocou uma lagarta de D. saccharalis, oriunda das duas condições de alimentação. Nestes testes, foi observada a percentagem de parasitismo e, continua-mente, o comportamento da primeira escolha de fêmeas de C. flavipes, em intervalos de zero a um, um a três, três a cinco, cinco a oito e de oito a dez minutos após as liberações. Lagartas de D. saccharalis, oriundas da alimentação em dieta artificial com colmos triturados dos cultivares, foram igualmente preferidas para atratividade de fêmeas do parasitoide C. flavipes. A percentagem de parasitismo de lagartas de D. saccharalis, criadas com dietas artificiais com colmos dos cultivares SP80-1042 e RB855536, foi igualmente parasitadas por C. flavipes

Indirect effect of neem oil on Podisus nigrispinus (Hemiptera, Pentatomidae): biology and predatory capacity

This study evaluated the effects on the development and predatory capacity of Podisus nigrispinus fed on Spodoptera frugiperda that have ingested different concentrations of neem oil. The predatory capacity of Podisus nigrispinus was assessed, separating nymphs (fourth instar) and adults (males and females). The treatments consisted of S. frugiperda larvae reared in neem oil aqueous solutions (0.077, 0.359 and 0.599%), deltamethrin EC 25 (0.100%) and control arranged in a completely randomized design, with ten replicates. Insects were offered three larval densities (one, three and six), in the third or fourth instars. The predated larvae were examined at 24 and 48 hours after the beginning of the experiment. Biological parameters of Podisus nigrispinus were evaluated in groups of ten second-instar nymphs transferred to pots, in five replicates. Insects were offered 2-6 third and/or fourth-instar larvae reared in the same neem oil concentrations in a completely randomized design. The following parameters were evaluated: duration of each nymph stage (days), nymph mortality (%), weight of fifth-instar nymphs (mg), sex ratio, weight of males and females (mg) and longevity of unfed adults (days). The predatory capacity of nymphs and adults of Podisus nigrispinus was influenced by the neem oil at the concentrations of 0.359% and 0.599% in the highest density. The concentration of 0.359% lengthened the nymphal stage and the concentration of 0.599% reduced the weight of males