Population Genetic Structuring in Opisthorchis viverrini over Various Spatial Scales in Thailand and Lao PDR

Khon Kaen Province in northeast Thailand is known as a hot spot for opisthorchiasis in Southeast Asia. Preliminary allozyme and mitochondrial DNA haplotype data from within one endemic district in this Province (Ban Phai), indicated substantial genetic variability within Opisthorchis viverrini. Here, we used microsatellite DNA analyses to examine the genetic diversity and population structure of O. viverrini from four geographically close localities in Khon Kaen Province. Genotyping based on 12 microsatellite loci yielded a mean number of alleles per locus that ranged from 2.83 to 3.7 with an expected heterozygosity in Hardy-Weinberg equilibrium of 0.44-0.56. Assessment of population structure by pairwise F(ST) analysis showed inter-population differentiation (P<0.05) which indicates population substructuring between these localities. Unique alleles were found in three of four localities with the highest number observed per locality being three. Our results highlight the existence of genetic diversity and population substructuring in O. viverrini over a small spatial scale which is similar to that found at a larger scale. This provides the basis for the investigation of the role of parasite genetic diversity and differentiation in transmission dynamics and control of O. viverrini

Influence of Coincidence Site Lattice Boundary on Creep Resistance of P91 Steel Weldments

The grain boundary structure is usually described by the coincidence site lattice (CSL) model based on the misorientation of adjoining crystals. Therefore, the objective of the present investigation is to seek the correlation between CSL fraction and creep resistance of modified 9Cr–1Mo steel (P91) with and without boron addition. Results showed that CSL fraction increases with increase in heat treatment temperature and this increase is more prominent in boron containing modified 9Cr–1Mo steel. Creep test results show the increase in creep rupture life with increase in CSL fraction for both the base metals; but this increase is more in boron containing steel than the boron free steel. This improvement is attributed to the stability of CSL boundaries in the material. In spite of the increase in CSL boundaries with normalizing heat treatment temperature, boron free material shows less creep rupture life in its weldment than the boron containing steel weldment

A linear programming-based method for job shop scheduling

We present a decomposition heuristic for a large class of job shop scheduling problems. This heuristic utilizes information from the linear programming formulation of the associated optimal timing problem to solve subproblems, can be used for any objective function whose associated optimal timing problem can be expressed as a linear program (LP), and is particularly effective for objectives that include a component that is a function of individual operation completion times. Using the proposed heuristic framework, we address job shop scheduling problems with a variety of objectives where intermediate holding costs need to be explicitly considered. In computational testing, we demonstrate the performance of our proposed solution approach

Absorption Imaging and Spectroscopy of Ultracold Neutral Plasmas

Absorption imaging and spectroscopy can probe the dynamics of an ultracold neutral plasma during the first few microseconds after its creation. Quantitative analysis of the data, however, is complicated by the inhomogeneous density distribution, expansion of the plasma, and possible lack of global thermal equilibrium for the ions. In this article we describe methods for addressing these issues. Using simple assumptions about the underlying temperature distribution and ion motion, the Doppler-broadened absorption spectrum obtained from plasma images can be related to the average temperature in the plasma.Comment: 14 pages, 8 figure

Bottom-up Formation of Carbon-Based Structures with Multilevel Hierarchy from MOF-Guest Polyhedra.

Three-dimensional carbon-based structures have proven useful for tailoring material properties in structural mechanical and energy storage applications. One approach to obtain them has been by carbonization of selected metal-organic frameworks (MOFs) with catalytic metals, but this is not applicable to most common MOF structures. Here, we present a strategy to transform common MOFs, by guest inclusions and high-temperature MOF-guest interactions, into complex carbon-based, diatom-like, hierarchical structures (named for the morphological similarities with the naturally existing diatomaceous species). As an example, we introduce metal salt guests into HKUST-1-type MOFs to generate a family of carbon-based nano-diatoms with two to four levels of structural hierarchy. We report control of the morphology by simple changes in the chemistry of the MOF and guest, with implications for the formation mechanisms. We demonstrate that one of these structures has unique advantages as a fast-charging lithium-ion battery anode. The tunability of composition should enable further studies of reaction mechanisms and result in the growth of a myriad of unprecedented carbon-based structures from the enormous variety of currently available MOF-guest candidates.The project was funded through a European Research Council (ERC) grant to S.K.S. (grant number: EMATTER 280078). A.K.C. and Y.W. thank the Ras Al Khaimah Center for Advanced Materials (RAK-CAM). T.W. thanks the China Scholarship Council (CSC) for funding and EPSRC Centre for Doctoral Training in Sensor Technologies and Applications (EP/L015889/1 and 1566990) for support. W.L. acknowledges the EPSRC grants (EP/L011700/1 and EP/N004272/1). Financial support by the Max Planck Society is gratefully acknowledged. K.D.F. acknowledges support from the Winston Churchill Foundation of the United States. C.Y. thanks the Cambridge Commonwealth, European and International Trust for funding

The influence of thermal cycles on the microstructure of grade 92 steel

The microstructure in the heat-affected zone (HAZ) of welds made from the 9 wt pct chromium martensitic Grade 92 steel is complex and has not yet been completely understood. There is a lack of systematic microstructural investigations to define the different regions of the microstructure across the HAZ of Grade 92 steel welds as a function of the welding process. In this study, the microstructure in the HAZ of an as-fabricated single-pass bead-on-plate weld on a parent metal of Grade 92 steel was systematically investigated by using an extensive range of electron and ion-microscopy-based techniques. A dilatometer was used to apply controlled thermal cycles to simulate the microstructures in the different regions of the HAZ. A wide range of microstructural properties in the simulated materials were then characterized and compared with the experimental observations from the weld HAZ. It was found that the microstructure in the HAZ of a single-pass Grade 92 steel weld can be categorized as a function of a decreasing peak temperature reached as (1) the completely transformed (CT) region, in which the original matrix is completely reaustenitized with complete dissolution of the pre-existing secondary precipitate particles; (2) the partially transformed (PT) region, where the original matrix is partially reaustenitized along with a partial dissolution of the secondary precipitate particles from the original matrix; and (3) the overtempered (OT) region, where the pre-xisting precipitate particles coarsen. The PT region is considered to be the susceptible area for damage in the commonly reported HAZ failures in weldments constructed from these types of steels

Proteomic and transcriptomic approaches to identify resistance and susceptibility related proteins in contrasting rice genotypes infected with fungal pathogen Rhizoctonia solani

The devastating sheath blight disease caused by Rhizoctonia solani Kuhn (teleomorph: Thanatephorus cucumeris) causes major yield loss in most rice growing regions of the world. In this study, two moderately tolerant and four susceptible genotypes of rice were selected for R. solani induced proteome analysis using two-dimensional polyacrylamide gel electrophoresis. Forty five differentially expressed proteins (DEPs) were identified and analyzed by Mass Spectrometry. Based on their functions, these proteins were classified into different groups, viz., photosynthesis, resistance and pathogenesis, stress, cell wall metabolism and cytoskeleton development associated proteins, and hypothetical or uncharacterized proteins. Expression of 14 genes encoding DEPs was analyzed by quantitative PCR which showed consistency in transcripts and genes expression pattern. Furthermore, the expression of 16 other genes involved in diverse biological functions was analyzed. Up-regulation of these genes in the tolerant genotype Pankaj during sheath blight disease suggested efficient genetic regulation of this cultivar under stress. Also, expression analysis of conserved microRNAs (miRNAs) and their target genes revealed important role of miRNAs in post-transcriptional gene regulation during development of rice sheath blight disease. Genome-wide discovery of miRNAs and further characterization of DEPs and genes will help in better understanding of the molecular events during sheath blight disease development in rice

Pectin induced transcriptome of a Rhizoctonia solani strain causing sheath blight disease in rice reveals insights on key genes and RNAi machinery for development of pathogen derived resistance

Key message RNAi mediated silencing of pectin degrading enzyme of R. solani gives a high level of resistance against sheath blight disease of rice. Abstract Rice sheath blight disease caused by Rhizoctonia solani Kuhn (telemorph; Thanatephorus cucumeris) is one of the most devastating fungal diseases which cause severe loss to rice grain production. In the absence of resistant cultivars, the disease is currently managed through fungicides which add to environmental pollution. To explore the potential of utilizing RNA interference (RNAi)-mediated resistance against sheath blight disease, we identified genes encoding proteins and enzymes involved in the RNAi pathway in this fungal pathogen. The RNAi target genes were deciphered by RNAseq analysis of a highly virulent strain of the R. solani grown in pectin medium. Additionally, pectin metabolism associated genes of R. solani were analyzed through transcriptome sequencing of infected rice tissues obtained from six diverse rice cultivars. One of the key candidate gene AG1IA_04727 encoding polygalacturonase (PG), which was observed to be significantly upregulated during infection, was targeted through RNAi to develop disease resistance. Stable expression of PG-RNAi construct in rice showed efficient silencing of AG1IA_04727 and suppression of sheath blight disease. This study highlights important information about the existence of RNAi machinery and key genes of R. solani which can be targeted through RNAi to develop pathogen-derived resistance, thus opening an alternative strategy for developing sheath blight-resistant rice cultivars

KASP genotyping reveals disease resistance and yield enhancement in swarna introgression lines

Deployment of marker-assisted selection (MAS) in the molecular breeding programmes has transformed the crop breeding over the last decade, bringing speed and precision to the breeding programmes. The experiment was conducted during rainy (kharif) seasons of 2019, 2020, and 2021 at ICAR-Indian Institute of Rice Research, Rajendranagar, Hyderabad, Telangana for validation of the Kompetitive Allele Specific PCR (KASP) SNP markers for routine marker- assisted selection through genotyping and phenotyping of a set of breeding lines segregating for grain number, yield and resistance to bacterial blight and blast diseases. Initially, 150 introgression lines of Swarna possessing bacterial leaf blight (Xa21), blast (Pi54) and yield enhancing gene (Gn1a) at ICF4 generation were genotyped using trait specific KASP markers, and a set of 22 plants was identified to be homozygous for all the three genes, 68 plants were found positive for two genes possessing either Xa21 + Gn1a and Pi54 + Gn1a, rest were having different single gene. Simultaneously, plants which were triple gene positives were also subjected for stringent phenotypic screening for the targeted stresses, viz. bacterial blight and blast disease resistance and further evaluated for grain number and other key agronomic traits. All the three-gene positive plants exhibited high level of resistance to bacterial blight and blast diseases in comparison with positive checks and displayed higher grain number and yield than the recurrent parent, Swarna. The efficiency of SNP marker system provided by Intertek is accurate, cost effective and accurate with phenotype

Improvement of two traditional Basmati rice varieties for bacterial blight resistance and plant stature through morphological and marker-assisted selection

Bacterial blight (BB) is a major production threat to Basmati, the aromatic rice prized for its unique quality. In order to improve the BB resistance of two elite, traditional BB-susceptible Basmati varieties (Taraori Basmati and Basmati 386), we utilized the strategy of limited marker-assisted backcrossing for introgression of two major BB resistance genes, Xa21 and xa13, coupled with phenotype-based selection for improvement of their plant type and yield. Improved Samba Mahsuri, an elite high-yielding, fine-grain-type BB-resistant rice variety served as donor for BB resistance. Backcross-derived improved Basmati lines at BC1F5 possessing a single resistance gene (i.e. either Xa21 or xa13) displayed moderate resistance to BB, while lines possessing both Xa21 and xa13 showed significantly higher levels of resistance. Two-gene pyramid lines (Xa21 + xa13) possessing good grain and cooking quality similar to their respective traditional Basmati parents, short plant stature (<110 cm plant height) and higher grain yield than the recurrent parent(s) were identified and advanced. This work demonstrates the successful application of marker-assisted selection in conjunction with phenotype-based selection for targeted introgression of multiple resistance genes into traditional Basmati varieties along with improvement of their plant stature and yield