The Ontology Lookup Service: more data and better tools for controlled vocabulary queries

The Ontology Lookup Service (OLS) (http://www.ebi.ac.uk/ols) provides interactive and programmatic interfaces to query, browse and navigate an ever increasing number of biomedical ontologies and controlled vocabularies. The volume of data available for querying has more than quadrupled since it went into production and OLS functionality has been integrated into several high-usage databases and data entry tools. Improvements have been made to both OLS query interfaces, based on user feedback and requirements, to improve usability and service interoperability and provide novel ways to perform queries

The Next Generation Virgo Cluster Survey (NGVS). XVIII. Measurement and Calibration of Surface Brightness Fluctuation Distances for Bright Galaxies in Virgo (and Beyond)

We describe a program to measure surface brightness fluctuation (SBF) distances to galaxies observed in the Next Generation Virgo Cluster Survey (NGVS), a photometric imaging survey covering $104~deg^2$ of the Virgo cluster in the ${u}^*,g,i,z$ bandpasses with the Canada-France Hawaii Telescope. We describe the selection of the sample galaxies, the procedures for measuring the apparent $i$-band SBF magnitude $\bar{i}$, and the calibration of the absolute $\bar{M}_i$ as a function of observed stellar population properties. The multi-band NGVS data set provides multiple options for calibrating the SBF distances, and we explore various calibrations involving individual color indices as well as combinations of two different colors. Within the color range of the present sample, the two-color calibrations do not significantly improve the scatter with respect to wide-baseline, single-color calibrations involving $u^{*}$. We adopt the ${u}^*{-}z$ calibration as reference for the present galaxy sample, with an observed scatter of 0.11 mag. For a few cases that lack good ${u}^*$ photometry, we use an alternative relation based on a combination of $g{-}i$ and $g{-}z$ colors, with only a slightly larger observed scatter of 0.12 mag. The agreement of our measurements with the best existing distance estimates provides confidence that our measurements are accurate. We present a preliminary catalog of distances for 89 galaxies brighter than $B_T\approx13.0$ mag within the survey footprint, including members of the background M and W Clouds at roughly twice the distance of the main body of the Virgo cluster. The extension of the present work to fainter and bluer galaxies is in progress.Comment: ApJ accepte

Correlations of Globular Cluster Properties: Their Interpretations and Uses

Correlations among the independently measured physical properties of globular clusters (GCs) can provide powerful tests for theoretical models and new insights into their dynamics, formation, and evolution. We review briefly some of the previous work, and present preliminary results from a comparative study of GC correlations in the Local Group galaxies. The results so far indicate that these diverse GC systems follow the same fundamental correlations, suggesting a commonality of formative and evolutionary processes which produce them.Comment: An invited review, to appear in "New Horizons in Globular Cluster Astronomy", eds. G. Piotto, G. Meylan, S.G. Djorgovski, and M. Riello, ASPCS, in press (2003). Latex file, 8 pages, 5 eps figures, style files include

The Next Generation Virgo Cluster Survey. VII. The intrinsic shapes of low-luminosity galaxies in the core of the Virgo cluster, and a comparison with the Local Group

(Abridged) We investigate the intrinsic shapes of low-luminosity galaxies in the central 300 kpc of the Virgo cluster using deep imaging obtained as part of the NGVS. We build a sample of nearly 300 red-sequence cluster members in the yet unexplored $-14 < M_{g} < -8$ magnitude range. The observed distribution of apparent axis ratios is then fit by families of triaxial models with normally-distributed intrinsic ellipticities and triaxialities. We develop a Bayesian framework to explore the posterior distribution of the model parameters, which allows us to work directly on discrete data, and to account for individual, surface brightness-dependent axis ratio uncertainties. For this population we infer a mean intrinsic ellipticity E=0.43, and a mean triaxiality T=0.16. This implies that faint Virgo galaxies are best described as a family of thick, nearly oblate spheroids with mean intrinsic axis ratios 1:0.94:0.57. We additionally attempt a study of the intrinsic shapes of Local Group satellites of similar luminosities. For the LG population we infer a slightly larger mean intrinsic ellipticity E=0.51, and the paucity of objects with round apparent shapes translates into more triaxial mean shapes, 1:0.76:0.49. We finally compare the intrinsic shapes of NGVS low-mass galaxies with samples of more massive quiescent systems, and with field, star-forming galaxies of similar luminosities. We find that the intrinsic flattening in this low-luminosity regime is almost independent of the environment in which the galaxy resides--but there is a hint that objects may be slightly rounder in denser environments. The comparable flattening distributions of low-luminosity galaxies that have experienced very different degrees of environmental effects suggests that internal processes are the main drivers of galaxy structure at low masses--with external mechanisms playing a secondary role.Comment: Accepted to ApJ. 18 pages, 12 figure

The ACS Virgo Cluster Survey II. Data Reduction Procedures

The ACS Virgo Cluster Survey is a large program to carry out multi-color imaging of 100 early-type members of the Virgo Cluster using the Advanced Camera for Surveys (ACS) on the Hubble Space Telescope. Deep F475W and F850LP images (~ SDSS g and z) are being used to study the central regions of the program galaxies, their globular cluster systems, and the three-dimensional structure of Virgo itself. In this paper, we describe in detail the data reduction procedures used for the survey, including image registration, drizzling strategies, the computation of weight images, object detection, the identification of globular cluster candidates, and the measurement of their photometric and structural parameters.Comment: 33 pages, 8 figures. Accepted for publication in ApJS. Also available at http://www.physics.rutgers.edu/~pcote/acs/publications.htm

The Environment of M85 optical transient 2006-1: constraints on the progenitor age and mass

M85 optical transient 2006-1 (M85 OT 2006-1) is the most luminous member of the small family of V838 Mon-like objects, whose nature is still a mystery. This event took place in the Virgo cluster of galaxies and peaked at an absolute magnitude of I~-13. Here we present Hubble Space Telescope images of M85 OT 2006-1 and its environment, taken before and after the eruption, along with a spectrum of the host galaxy at the transient location. We find that the progenitor of M85 OT 2006-1 was not associated with any star forming region. The g and z-band absolute magnitudes of the progenitor were fainter than about -4 and -6 mag, respectively. Therefore, we can set a lower limit of ~50 Myr on the age of the youngest stars at the location of the progenitor that corresponds to a mass of <7 solar mass. Previously published line indices suggest that M85 has a mean stellar age of 1.6+/-0.3 Gyr. If this mean age is representative of the progenitor of M85 OT 2006-1, then we can further constrain its mass to be less than 2 solar mass. We compare the energetics and mass limit derived for the M85 OT 2006-1 progenitor with those expected from a simple model of violent stellar mergers. Combined with further modeling, these new clues may ultimately reveal the true nature of these puzzling events.Comment: 4 pages, accepted to Ap

Trends in the Globular Cluster Luminosity Function of Early-Type Galaxies

We present results from a study of the globular cluster luminosity function (GCLF) in a sample of 89 early-type galaxies observed as part of the ACS Virgo Cluster Survey. Using a Gaussian parametrization of the GCLF, we find a highly significant correlation between the GCLF dispersion, sigma, and the galaxy luminosity, M_B, in the sense that the GC systems in fainter galaxies have narrower luminosity functions. The GCLF dispersions in the Milky Way and M31 are fully consistent with this trend, implying that the correlation between sigma and galaxy luminosity is more fundamental than older suggestions that GCLF shape is a function of galaxy Hubble type. We show that the sigma - M_B relation results from a bonafide narrowing of the distribution of (logarithmic) cluster masses in fainter galaxies. We further show that this behavior is mirrored by a steepening of the GC mass function for relatively high masses, M >~ 3 x 10^5 M_sun, a mass regime in which the shape of the GCLF is not strongly affected by dynamical evolution over a Hubble time. We argue that this trend arises from variations in initial conditions and requires explanation by theories of cluster formation. Finally, we confirm that in bright galaxies, the GCLF "turns over" at the canonical mass scale of M_TO ~ 2 x 10^5 M_sun. However, we find that M_TO scatters to lower values (~1-2 x 10^5 M_sun) in galaxies fainter than M_B >~ -18.5, an important consideration if the GCLF is to be used as a distance indicator for dwarf ellipticals.Comment: 4 pages, 3 figures. Accepted for publication in ApJ Letters. Also available at http://www.cadc.hia.nrc.gc.ca/community/ACSVCS/publications.htm

The ACS Virgo Cluster Survey XV. The Formation Efficiencies of Globular Clusters in Early-Type Galaxies: The Effects of Mass and Environment

The fraction of stellar mass contained in globular clusters (GCs), also measured by number as the specific frequency, is a fundamental quantity that reflects both a galaxy's early star formation and its entire merging history. We present specific frequencies, luminosities, and mass fractions for the globular cluster systems of 100 early-type galaxies in the ACS Virgo Cluster Survey, the largest homogeneous catalog of its kind. We find that 1) GC mass fractions can be high in both giants and dwarfs, but are universally low in galaxies with intermediate luminosities. 2) The behavior of specific frequency across galaxy mass is dominated by the blue GCs. 3) The GC fractions of low-mass galaxies exhibit a dependence on environment. Nearly all dwarf galaxies with high GC fractions are within 1 Mpc of the cD galaxy M87, presenting the first strong evidence that GC formation in dwarfs is biased toward dense environments. 4) GC formation in central dwarfs is biased because their stars form earliest and most intensely. Comparisons to the Millennium Simulation show that central dwarfs have older stellar populations and form more stars at higher star formation rates (SFRs) and SFR surface densities. The SFR surface density in simulated dwarfs peaks before the total SFR, naturally producing GC populations that are older and more metal-poor than the field stars. 5) Dwarfs within ~40 kpc of the giant ellipticals M87 and M49 are red and have few or no GCs, suggesting that they have been tidally stripped and have contributed their GCs to the halos of their giant neighbors. The central dwarfs with high GC mass fractions are thus likely to be the survivors most similar to the protogalaxies that assembled the rich M87 globular cluster system.(Abridged)Comment: 27 pages, 21 figures, 7 tables. Accepted for publication in the Astrophysical Journa