Analysis of the Genome of the Sexually Transmitted Insect Virus Helicoverpa zea Nudivirus 2

The sexually transmitted insect virus Helicoverpa zea nudivirus 2 (HzNV-2) was determined to have a circular double-stranded DNA genome of 231,621 bp coding for an estimated 113 open reading frames (ORFs). HzNV-2 is most closely related to the nudiviruses, a sister group of the insect baculoviruses. Several putative ORFs that share homology with the baculovirus core genes were identified in the viral genome. However, HzNV-2 lacks several key genetic features of baculoviruses including the late transcriptional regulation factor, LEF-1 and the palindromic hrs, which serve as origins of replication. The HzNV-2 genome was found to code for three ORFs that had significant sequence homology to cellular genes which are not generally found in viral genomes. These included a presumed juvenile hormone esterase gene, a gene coding for a putative zinc-dependent matrix metalloprotease, and a major facilitator superfamily protein gene; all of which are believed to play a role in the cellular proliferation and the tissue hypertrophy observed in the malformation of reproductive organs observed in HzNV-2 infected corn earworm moths, Helicoverpa zea

Signatures of a Pressure-Induced Topological Quantum Phase Transition in BiTeI

We report the observation of two signatures of a pressure-induced topological quantum phase transition in the polar semiconductor BiTeI using x-ray powder diffraction and infrared spectroscopy. The x-ray data confirm that BiTeI remains in its ambient-pressure structure up to 8 GPa. The lattice parameter ratio c/a shows a minimum between 2.0-2.9 GPa, indicating an enhanced c-axis bonding through pz band crossing as expected during the transition. Over the same pressure range, the infrared spectra reveal a maximum in the optical spectral weight of the charge carriers, reflecting the closing and reopening of the semiconducting band gap. Both of these features are characteristics of a topological quantum phase transition, and are consistent with a recent theoretical proposal.Comment: revised final versio

Nanoscale interaction of RecG with mobile fork DNA

RecG DNA helicase is a guardian of the bacterial genome where it dominates stalled DNA replication fork rescue. The single-stranded DNA binding protein (SSB) is involved in this process and promotes the binding of RecG to stalled replication forks. Atomic force microscopy (AFM) was used to investigate the interaction of RecG and SSB on a mobile fork substrate capable of being regressed. In the absence of proteins, the fork undergoes spontaneous dynamics between two states, defined by the length of the DNA complementarity at the fork. The binding of SSB does not affect these dynamics as it binds to single-stranded regions as expected. In contrast, RecG interacts with the two states quite differently. We demonstrate that RecG has two modes of interaction with fork DNA in the presence of SSB and ATP. In the first mode, RecG translocates over the duplex region and this activity is defined by SSB-mediated remodeling of helicase. In the second mode, RecG utilizes its helicase activity to regress the fork, in an ATP-dependent manner, displacing SSB on the ssDNA. Overall, our results highlight two functions of RecG that can be employed in the regulation of stalled DNA replication fork rescue. This journal is © The Royal Society of Chemistry

Cultivation of the microalga, Chlorella pyrenoidosa, in biogas wastewater

Biogas wastewater is always a problem as a result of its extremely high concentrations of nitrogen and phosphorus, which is the main reason for the eutrophication of the surrounding water. The microalga, Chlorella pyrenoidosa, can utilize the nitrogen and phosphorus in wastewater for its growth. Therefore, the microalga was introduced to be cultivated in the biogas wastewater, which could not only bioremediate the wastewater, but also produce plenty of the microalga biomass that could be used for the exploitation of fertilizers, feed additives and biofuels. This study showed that the microalga, C. pyrenoidosa could grow well in the biogas wastewater under optimal condition: initial cell density of 0.15 (OD680), pH 8 and illumination intensity of 10000 LX. Under the optimal condition, the dry cell weight of the microalgae reached 0.1 g/L after cultivation in the wastewater for fourteen (14) days; in the meantime, the microalga also removed 71.8% of phosphorus, 100% of ammoniacal nitrogen (NH4+-N), 52.8% of nitrate nitrogen (NO3-N) and 23.0% of nitrite nitrogen (NO2-N) from the biogas wastewater, suggesting that the cultivation of C. pyrenoidosa in biogas wastewater would be efficient for the treatment of wastewater. This study also provided a low-cost way to produce the microalga and its relevant products.Key words: Chlorella pyrenoidosa, biogas wastewater, cultivation, phosphorus, nitrogen

Is IT Really Becoming a Commodity?

Academics and others have claimed that IT is becoming a commodity input, one that can no longer confer a competitive advantage. If IT is becoming a commodity, the role played by IT in most firms should be akin to that played by utilities. We conduct an event-study to determine whether IT is becoming a commodity. We use the volatility of a firm’s stock price to certain macroeconomic news (news about shrinking or expanding demand) to compare the stock price behavior of utility firms with that of IT firms. We find that although the IT industry as a whole is not becoming a commodity, there are some firms within the IT industry that are similar to a utility. In addition, we find that the view that IT can confer a competitive advantage (as perceived by financial markets) was stronger during the dotcom boom period than at other times in the study period (1980-2007)

Remodeling of RecG Helicase at the DNA Replication Fork by SSB Protein.

The RecG DNA helicase a key player in stalled replication fork rescue. The single-stranded DNA binding protein (SSB) participates in this process, but its role in the interaction of RecG with the fork remains unclear. We used atomic force microscopy (AFM) to visualize the interaction of RecG with a fork DNA in the presence of SSB. We discovered that SSB enhances RecG loading efficiency onto the DNA fork by threefold. Additionally, SSB interacts with RecG leading to the RecG remodeling. As a result, RecG separates from the fork, but remains bound to the DNA duplex. Moreover, in this new binding mode RecG is capable of translocation along the parental duplex DNA. We propose a model of RecG interaction with the replication fork involving two RecG binding modes. SSB plays the role of a remodeling factor defining the mode of RecG binding to the fork mediated by the SSB C-terminus. In the translocating mode, RecG remains in the vicinity of the fork and is capable of initiating the fork regression. Our results afford novel mechanistic insights into RecG interaction with the replication fork and provide the basis for further structural studies

Disruption of a Yeast ADE6 Gene Homolog in Ustilago maydis

A putative homolog of the Sacharromyces cereviseae ADE6 and Escherichia coli purL genes is identified near a multigenic complex, which contains two genes, sid1 and sid2, involved in a siderophore biosynthetic pathway inUstilago maydis. The putative ADE6 homolog was mutated by targeted gene disruption. The resulting mutant strains demonstrated a requirement for exogenous adenine, indicating that the U. maydis ade6 homolog is required for purine biosynthesis

Zebrafish have a competent p53-dependent nucleotide excision repair pathway to resolve ultraviolet B-induced DNA damage in the skin

Ultraviolet (UV) light is a primary environmental risk factor for melanoma, a deadly form of skin cancer derived from the pigmented cells called melanocytes. UVB irradiation causes DNA damage, mainly in the form of pyrimidine dimers (cis-syn cyclobutane pyrimidine dimers and pyrimidine (6-4) pyrimidone photoproducts), and organisms have developed complex multiprotein repair processes to cope with the DNA damage. Zebrafish is becoming an important model system to study the effects of UV light in animals, in part because the embryos are easily treated with UV irradiation, and the DNA damage repair pathways appear to be conserved in zebrafish and mammals. We are interested in exploring the effects of UV irradiation in young adult zebrafish, so that we can apply them to the study of gene–environment interactions in models of skin cancer. Using the Xiphophorus UV melanoma model as a starting point, we have developed a UV irradiation treatment chamber, and established UV treatment conditions at different ages of development. By translating the Xiphophorus UV treatment methodology to the zebrafish system, we show that the adult zebrafish skin is competent for nucleotide excision DNA damage repair, and that like in mammalian cells, UV treatment promotes phosphorylation of H2AX and a p53-dependent response. These studies provide the groundwork for exploring the role of UV light in melanoma development in zebrafish